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Author: Peter J Park

Rankings

  • All-time downloads: 26,551 (rank: 1,902 out of 404,161)
  • Categories:
    • bioinformatics: 8,623 (rank: 735 out of 34,272)
    • cancer biology: 1,962 (rank: 1,801 (tie) out of 28,183)
    • developmental biology: 195 (rank: 13,499 (tie) out of 15,768)
    • genomics: 13,664 (rank: 929 out of 42,763)
    • molecular biology: 285 (rank: 14,043 (tie) out of 21,566)
    • neuroscience: 1,822 (rank: 8,917 (tie) out of 67,824)

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Preprints

Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing

genomics more details view paper
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Pan-cancer analysis of whole genomes reveals driver rearrangements promoted by LINE-1 retrotransposition in human tumours

genomics more details view paper
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    • In genomics: 324 out of 5,955
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The 4D Nucleome Project

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HiGlass: Web-based Visual Exploration and Analysis of Genome Interaction Maps

bioinformatics more details view paper
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    • In bioinformatics: 492 out of 8,837
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A user’s guide to the online resources for data exploration, visualization, and discovery for the Pan-Cancer Analysis of Whole Genomes project (PCAWG)

bioinformatics more details view paper
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    • In bioinformatics: 583 out of 8,837
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    • Site-wide: 7,828 out of 94,912

A molecular portrait of microsatellite instability across multiple cancers

cancer biology more details view paper
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    • In cancer biology: 88 out of 3,367
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    • Site-wide: 18,584 out of 94,912

Linked-read analysis identifies mutations in single-cell DNA sequencing data

bioinformatics more details view paper
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    • In bioinformatics: 1,041 out of 8,837
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    • Site-wide: 38,211 out of 94,912

Genomic footprints of activated telomere maintenance mechanisms in cancer

genomics more details view paper
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    • In genomics: 1,114 out of 5,955
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    • Site-wide: 36,534 out of 94,912

Aging and neurodegeneration are associated with increased mutations in single human neurons

genomics more details view paper
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    • In genomics: 1,316 out of 5,955
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    • Site-wide: 60,233 out of 94,912
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    • Site-wide: 88,464 out of 94,912

The Landscape of Mutational Mosaicism in Autistic and Normal Human Cerebral Cortex

neuroscience more details view paper
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    • In neuroscience: 1,999 out of 16,862
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    • Site-wide: 1,996 out of 94,912
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    • Site-wide: 8,779 out of 94,912

HiNT: a computational method for detecting copy number variations and translocations from Hi-C data

bioinformatics more details view paper
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    • Site-wide: 14,398 out of 94,912
    • In bioinformatics: 2,235 out of 8,837
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    • Site-wide: 52,458 out of 94,912

Tibanna: software for scalable execution of portable pipelines on the cloud

bioinformatics more details view paper
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    • In bioinformatics: 2,249 out of 8,837
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  • Since beginning of last month:
    • Site-wide: 14,228 out of 94,912

Parallel RNA and DNA analysis after Deep-sequencing (PRDD-seq) reveals cell type-specific lineage patterns in human brain

neuroscience more details view paper
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    • Site-wide: 16,096 out of 94,912
    • In neuroscience: 2,603 out of 16,862
  • Year to date:
    • Site-wide: 2,487 out of 94,912
  • Since beginning of last month:
    • Site-wide: 20,622 out of 94,912

PaSD-qc: Quality control for single cell whole-genome sequencing data using power spectral density estimation

bioinformatics more details view paper
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    • Site-wide: 50,374 out of 94,912
    • In bioinformatics: 5,727 out of 8,837
  • Year to date:
    • Site-wide: 90,362 out of 94,912
  • Since beginning of last month:
    • Site-wide: 80,238 out of 94,912

Epigenetic transcriptional reprogramming by WT1 mediates a repair response during podocyte injury

molecular biology more details view paper
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    • Site-wide: 58,847 out of 94,912
    • In molecular biology: 1,950 out of 3,265
  • Year to date:
    • Site-wide: 12,861 out of 94,912
  • Since beginning of last month:
    • Site-wide: 33,987 out of 94,912

HiTea: a computational pipeline to identify non-reference transposable element insertions in Hi-C data

bioinformatics more details view paper
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    • In bioinformatics: 6,743 out of 8,837
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    • Site-wide: 26,402 out of 94,912

Otx2 and Oc1 directly regulate the transcriptional program of cone photoreceptor development

developmental biology more details view paper
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    • Site-wide: 74,116 out of 94,912
    • In developmental biology: 2,308 out of 2,812
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    • Site-wide: 4,691 out of 94,912

The conserved elongation factor Spn1 is required for normal transcription, histone modifications, and splicing in Saccharomyces cerevisiae

genomics more details view paper
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  • Download rankings, all-time:
    • Site-wide: 87,540 out of 94,912
    • In genomics: 5,693 out of 5,955
  • Year to date:
    • Site-wide: 49,247 out of 94,912
  • Since beginning of last month:
    • Site-wide: 5,960 out of 94,912

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