Rxivist logo

Author: Bing Ren

Rankings

  • All-time downloads: 107,131 (rank: 941 )
  • Categories:
    • biochemistry: 1,059 (rank: 4,735 (tie) )
    • bioinformatics: 14,323 (rank: 452 )
    • cancer biology: 359 (rank: 22,792 (tie) )
    • cell biology: 1,084 (rank: 7,708 (tie) )
    • developmental biology: 2,136 (rank: 1,368 (tie) )
    • genetic and genomic medicine: 1,029 (rank: 2,137 (tie) )
    • genetics: 735 (rank: 19,964 (tie) )
    • genomics: 61,159 (rank: 128 )
    • molecular biology: 1,706 (rank: 2,955 (tie) )
    • neuroscience: 20,740 (rank: 294 )
    • pathology: 2,038 (rank: 583 (tie) )
    • systems biology: 763 (rank: 5,718 (tie) )

Downloads per author, site-wide

Preprints

Multi-tissue integrative analysis of personal epigenomes

genomics more details view paper

No download data for this paper yet.

SnapATAC: A Comprehensive Analysis Package for Single Cell ATAC-seq

bioinformatics more details view paper
  • Downloaded 9,208 times
  • Download rankings, all-time:
    • Site-wide: 923
    • In bioinformatics: 47
  • Year to date:
    • Site-wide: 1,451
  • Since beginning of last month:
    • Site-wide: 3,151

Multi-platform discovery of haplotype-resolved structural variation in human genomes

genomics more details view paper
  • Downloaded 8,382 times
  • Download rankings, all-time:
    • Site-wide: 1,044
    • In genomics: 89
  • Year to date:
    • Site-wide: 45,360
  • Since beginning of last month:
    • Site-wide: 54,385

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

neuroscience more details view paper
  • Downloaded 5,314 times
  • Download rankings, all-time:
    • Site-wide: 1,898
    • In neuroscience: 102
  • Year to date:
    • Site-wide: 1,517
  • Since beginning of last month:
    • Site-wide: 3,894

Single nucleus analysis of the chromatin landscape in mouse forebrain development

genomics more details view paper
  • Downloaded 5,150 times
  • Download rankings, all-time:
    • Site-wide: 1,979
    • In genomics: 190
  • Year to date:
    • Site-wide: 48,221
  • Since beginning of last month:
    • Site-wide: 54,519

Preservation of Chromatin Organization after Acute Loss of CTCF in Mouse Embryonic Stem Cells

genomics more details view paper
  • Downloaded 5,125 times
  • Download rankings, all-time:
    • Site-wide: 1,990
    • In genomics: 192
  • Year to date:
    • Site-wide: 38,746
  • Since beginning of last month:
    • Site-wide: 42,068

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

neuroscience more details view paper
  • Downloaded 4,902 times
  • Download rankings, all-time:
    • Site-wide: 2,120
    • In neuroscience: 122
  • Year to date:
    • Site-wide: 1,375
  • Since beginning of last month:
    • Site-wide: 1,649

Systematic mapping of chromatin state landscapes during mouse development

genomics more details view paper
  • Downloaded 4,674 times
  • Download rankings, all-time:
    • Site-wide: 2,269
    • In genomics: 239
  • Year to date:
    • Site-wide: 20,008
  • Since beginning of last month:
    • Site-wide: 23,925

An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum

neuroscience more details view paper
  • Downloaded 4,004 times
  • Download rankings, all-time:
    • Site-wide: 2,832
    • In neuroscience: 194
  • Year to date:
    • Site-wide: 2,205
  • Since beginning of last month:
    • Site-wide: 2,895

DNA Methylation Atlas of the Mouse Brain at Single-Cell Resolution

genomics more details view paper
  • Downloaded 3,819 times
  • Download rankings, all-time:
    • Site-wide: 3,035
    • In genomics: 342
  • Year to date:
    • Site-wide: 2,636
  • Since beginning of last month:
    • Site-wide: 3,965

A multimodal cell census and atlas of the mammalian primary motor cortex

neuroscience more details view paper
  • Downloaded 3,652 times
  • Download rankings, all-time:
    • Site-wide: 3,238
    • In neuroscience: 244
  • Year to date:
    • Site-wide: 1,904
  • Since beginning of last month:
    • Site-wide: 6,633

Single nucleus multi-omics links human cortical cell regulatory genome diversity to disease risk variants

genomics more details view paper
  • Downloaded 3,316 times
  • Download rankings, all-time:
    • Site-wide: 3,710
    • In genomics: 411
  • Year to date:
    • Site-wide: 4,449
  • Since beginning of last month:
    • Site-wide: 9,432

The 4D Nucleome Project

genomics more details view paper
  • Downloaded 3,150 times
  • Download rankings, all-time:
    • Site-wide: 3,995
    • In genomics: 448
  • Year to date:
    • Site-wide: 88,622
  • Since beginning of last month:
    • Site-wide: 97,629

3D Chromatin Architecture Remodeling during Human Cardiomyocyte Differentiation Reveals A Role Of HERV-H In Demarcating Chromatin Domains

genomics more details view paper
  • Downloaded 3,073 times
  • Download rankings, all-time:
    • Site-wide: 4,137
    • In genomics: 468
  • Year to date:
    • Site-wide: 28,075
  • Since beginning of last month:
    • Site-wide: 21,972

MAPPING OF LONG-RANGE CHROMATIN INTERACTIONS BY PROXIMITY LIGATION ASSISTED CHIP-SEQ

genomics more details view paper
  • Downloaded 2,904 times
  • Download rankings, all-time:
    • Site-wide: 4,459
    • In genomics: 495
  • Year to date:
    • Site-wide: 38,777
  • Since beginning of last month:
    • Site-wide: 42,200

Cell type-specific enhancer-promoter connectivity maps in the human brain and disease risk association

neuroscience more details view paper
  • Downloaded 2,868 times
  • Download rankings, all-time:
    • Site-wide: 4,545
    • In neuroscience: 402
  • Year to date:
    • Site-wide: 6,860
  • Since beginning of last month:
    • Site-wide: 10,021

Histone H3 Lysine 4 methyltransferases MLL3 and MLL4 Modulate Long-range Chromatin Interactions at Enhancers

genomics more details view paper
  • Downloaded 2,553 times
  • Download rankings, all-time:
    • Site-wide: 5,376
    • In genomics: 593
  • Year to date:
    • Site-wide: 62,481
  • Since beginning of last month:
    • Site-wide: 84,288

Simultaneous profiling of DNA methylation and chromatin architecture in mixed populations and in single cells

genomics more details view paper
  • Downloaded 2,453 times
  • Download rankings, all-time:
    • Site-wide: 5,746
    • In genomics: 646
  • Year to date:
    • Site-wide: 43,690
  • Since beginning of last month:
    • Site-wide: 42,234

A cell atlas of chromatin accessibility across 25 adult human tissues

genomics more details view paper
  • Downloaded 2,166 times
  • Download rankings, all-time:
    • Site-wide: 6,880
    • In genomics: 755
  • Year to date:
    • Site-wide: 563
  • Since beginning of last month:
    • Site-wide: 1,914

The human functional genome defined by genetic diversity

genomics more details view paper
  • Downloaded 2,090 times
  • Download rankings, all-time:
    • Site-wide: 7,249
    • In genomics: 790
  • Year to date:
    • Site-wide: 50,984
  • Since beginning of last month:
    • Site-wide: 68,749

A Large-Scale Internal Validation Study of Unsupervised Virtual Trichrome Staining Technologies on Non-alcoholic Steatohepatitis Liver Biopsies

pathology more details view paper
  • Downloaded 2,038 times
  • Download rankings, all-time:
    • Site-wide: 7,507
    • In pathology: 40
  • Year to date:
    • Site-wide: 1,797
  • Since beginning of last month:
    • Site-wide: 1,810

The changing mouse embryo transcriptome at whole tissue and single-cell resolution

developmental biology more details view paper
  • Downloaded 1,893 times
  • Download rankings, all-time:
    • Site-wide: 8,399
    • In developmental biology: 108
  • Year to date:
    • Site-wide: 12,957
  • Since beginning of last month:
    • Site-wide: 12,998

Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus

genomics more details view paper
  • Downloaded 1,865 times
  • Download rankings, all-time:
    • Site-wide: 8,583
    • In genomics: 928
  • Year to date:
    • Site-wide: 83,369
  • Since beginning of last month:
    • Site-wide: 113,493

Comparing 3D genome organization in multiple species using Phylo-HMRF

bioinformatics more details view paper
  • Downloaded 1,715 times
  • Download rankings, all-time:
    • Site-wide: 9,754
    • In bioinformatics: 1,167
  • Year to date:
    • Site-wide: 94,772
  • Since beginning of last month:
    • Site-wide: 86,332

CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains

molecular biology more details view paper
  • Downloaded 1,706 times
  • Download rankings, all-time:
    • Site-wide: 9,821
    • In molecular biology: 260
  • Year to date:
    • Site-wide: 8,950
  • Since beginning of last month:
    • Site-wide: 9,446

CTCF Promotes Long-range Enhancer-promoter Interactions and Lineage-specific Gene Expression in Mammalian Cells

genomics more details view paper
  • Downloaded 1,650 times
  • Download rankings, all-time:
    • Site-wide: 10,288
    • In genomics: 1,108
  • Year to date:
    • Site-wide: 11,680
  • Since beginning of last month:
    • Site-wide: 16,075

Pancreatic islet chromatin accessibility and conformation defines distal enhancer networks of type 2 diabetes risk

genomics more details view paper
  • Downloaded 1,583 times
  • Download rankings, all-time:
    • Site-wide: 10,963
    • In genomics: 1,177
  • Year to date:
    • Site-wide: 81,850
  • Since beginning of last month:
    • Site-wide: 97,871

Cardiac Cell Type-Specific Gene Regulatory Programs and Disease Risk Association

genomics more details view paper
  • Downloaded 1,578 times
  • Download rankings, all-time:
    • Site-wide: 11,010
    • In genomics: 1,183
  • Year to date:
    • Site-wide: 5,970
  • Since beginning of last month:
    • Site-wide: 6,738

Common DNA sequence variation influences 3-dimensional conformation of the human genome

genomics more details view paper
  • Downloaded 1,490 times
  • Download rankings, all-time:
    • Site-wide: 11,926
    • In genomics: 1,288
  • Year to date:
    • Site-wide: 115,207
  • Since beginning of last month:
    • Site-wide: 82,410

Single-cell chromatin accessibility analysis of mammary gland development reveals cell state transcriptional regulators and cellular lineage relationships

genomics more details view paper
  • Downloaded 1,419 times
  • Download rankings, all-time:
    • Site-wide: 12,896
    • In genomics: 1,376
  • Year to date:
    • Site-wide: 40,185
  • Since beginning of last month:
    • Site-wide: 53,487

Identification of essential regulatory elements in the human genome

genomics more details view paper
  • Downloaded 1,395 times
  • Download rankings, all-time:
    • Site-wide: 13,229
    • In genomics: 1,409
  • Year to date:
    • Site-wide: 89,343
  • Since beginning of last month:
    • Site-wide: 96,140

Iterative Refinement of Cellular Identity from Single-Cell Data Using Online Learning

bioinformatics more details view paper
  • Downloaded 1,183 times
  • Download rankings, all-time:
    • Site-wide: 16,954
    • In bioinformatics: 2,014
  • Year to date:
    • Site-wide: 23,777
  • Since beginning of last month:
    • Site-wide: 12,018

MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

bioinformatics more details view paper
  • Downloaded 1,155 times
  • Download rankings, all-time:
    • Site-wide: 17,551
    • In bioinformatics: 2,101
  • Year to date:
    • Site-wide: 101,250
  • Since beginning of last month:
    • Site-wide: 67,070

LSD1/KDM1A Maintains Genome-wide Homeostasis of Transcriptional Enhancers

biochemistry more details view paper
  • Downloaded 1,059 times
  • Download rankings, all-time:
    • Site-wide: 19,946
    • In biochemistry: 423
  • Year to date:
    • Site-wide: 43,600
  • Since beginning of last month:
    • Site-wide: 68,344

Genome-wide association and multi-omic analyses reveal new mechanisms for Heart Failure

genetic and genomic medicine more details view paper
  • Downloaded 1,029 times
  • Download rankings, all-time:
    • Site-wide: 20,787
    • In genetic and genomic medicine: 73
  • Year to date:
    • Site-wide: 36,658
  • Since beginning of last month:
    • Site-wide: 34,926

DNA replication-mediated error correction of ectopic CENP-A deposition maintains centromere identity

cell biology more details view paper
  • Downloaded 827 times
  • Download rankings, all-time:
    • Site-wide: 28,392
    • In cell biology: 1,064
  • Year to date:
    • Site-wide: 95,801
  • Since beginning of last month:
    • Site-wide: 95,995

An Array of 60,000 Antibodies for Proteome-Scale Antibody Generation and Target Discovery

systems biology more details view paper
  • Downloaded 763 times
  • Download rankings, all-time:
    • Site-wide: 31,809
    • In systems biology: 696
  • Year to date:
    • Site-wide: 100,876
  • Since beginning of last month:
    • Site-wide: 105,833

HUGIn: Hi-C Unifying Genomic Interrogator

genetics more details view paper
  • Downloaded 735 times
  • Download rankings, all-time:
    • Site-wide: 33,460
    • In genetics: 1,606
  • Year to date:
    • Site-wide: 122,176
  • Since beginning of last month:
    • Site-wide: 124,298

FIREcaller: Detecting Frequently Interacting Regions from Hi-C Data

bioinformatics more details view paper
  • Downloaded 532 times
  • Download rankings, all-time:
    • Site-wide: 50,535
    • In bioinformatics: 5,219
  • Year to date:
    • Site-wide: 72,879
  • Since beginning of last month:
    • Site-wide: 123,901

SnapHiC: a computational pipeline to map chromatin contacts from single cell Hi-C data

bioinformatics more details view paper
  • Downloaded 530 times
  • Download rankings, all-time:
    • Site-wide: 50,784
    • In bioinformatics: 5,236
  • Year to date:
    • Site-wide: 9,695
  • Since beginning of last month:
    • Site-wide: 28,633

A dual mechanism of enhancer activation by FOXA pioneer factors induces endodermal organ fates

genomics more details view paper
  • Downloaded 478 times
  • Download rankings, all-time:
    • Site-wide: 57,315
    • In genomics: 4,285
  • Year to date:
    • Site-wide: 24,738
  • Since beginning of last month:
    • Site-wide: 18,793

Pancreatic progenitor epigenome maps prioritize type 2 diabetes risk genes with roles in development

genomics more details view paper
  • Downloaded 449 times
  • Download rankings, all-time:
    • Site-wide: 61,170
    • In genomics: 4,467
  • Year to date:
    • Site-wide: 41,367
  • Since beginning of last month:
    • Site-wide: 47,641

Parallel Characterization of cis-Regulatory Elements for Multiple Genes UsingCRISPRpath

genomics more details view paper
  • Downloaded 397 times
  • Download rankings, all-time:
    • Site-wide: 69,367
    • In genomics: 4,829
  • Year to date:
    • Site-wide: 5,601
  • Since beginning of last month:
    • Site-wide: 9,118

Discovery and Functional Characterization of Pro-growth Enhancers in Human Cancer Cells

cancer biology more details view paper
  • Downloaded 359 times
  • Download rankings, all-time:
    • Site-wide: 75,946
    • In cancer biology: 2,231
  • Year to date:
    • Site-wide: 6,531
  • Since beginning of last month:
    • Site-wide: 27,208

MLL3/MLL4 Histone Methyltranferase Activity Dependent Chromatin Organization at Enhancers during Embryonic Stem Cell Differentiation

cell biology more details view paper
  • Downloaded 257 times
  • Download rankings, all-time:
    • Site-wide: 97,075
    • In cell biology: 4,511
  • Year to date:
    • Site-wide: 10,456
  • Since beginning of last month:
    • Site-wide: 8,857

A β-catenin-driven switch in TCF/LEF transcription factor binding to DNA target sites promotes commitment of mammalian nephron progenitor cells

developmental biology more details view paper
  • Downloaded 243 times
  • Download rankings, all-time:
    • Site-wide: 100,223
    • In developmental biology: 2,708
  • Year to date:
    • Site-wide: 62,882
  • Since beginning of last month:
    • Site-wide: 91,340

PanLingua

News