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Author: Bing Ren

Rankings

  • All-time downloads: 114,524 (rank: 939 )
  • Categories:
    • biochemistry: 1,087 (rank: 4,979 (tie) )
    • bioinformatics: 14,861 (rank: 463 )
    • cancer biology: 502 (rank: 18,926 (tie) )
    • cell biology: 1,223 (rank: 7,116 (tie) )
    • developmental biology: 2,228 (rank: 1,372 )
    • genetic and genomic medicine: 1,087 (rank: 2,995 (tie) )
    • genetics: 740 (rank: 20,564 (tie) )
    • genomics: 64,465 (rank: 138 )
    • molecular biology: 1,922 (rank: 2,819 (tie) )
    • neuroscience: 23,236 (rank: 262 )
    • pathology: 2,391 (rank: 518 (tie) )
    • systems biology: 782 (rank: 5,942 (tie) )

Downloads per author, site-wide

Preprints

SnapATAC: A Comprehensive Analysis Package for Single Cell ATAC-seq

bioinformatics more details view paper
  • Downloaded 9,460 times
  • Download rankings, all-time:
    • Site-wide: 980
    • In bioinformatics: 49
  • Year to date:
    • Site-wide: 1,973
  • Since beginning of last month:
    • Site-wide: 7,656

Multi-platform discovery of haplotype-resolved structural variation in human genomes

genomics more details view paper
  • Downloaded 8,405 times
  • Download rankings, all-time:
    • Site-wide: 1,147
    • In genomics: 98
  • Year to date:
    • Site-wide: 57,725
  • Since beginning of last month:
    • Site-wide: 57,576

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

neuroscience more details view paper
  • Downloaded 6,086 times
  • Download rankings, all-time:
    • Site-wide: 1,754
    • In neuroscience: 86
  • Year to date:
    • Site-wide: 1,293
  • Since beginning of last month:
    • Site-wide: 1,471

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

neuroscience more details view paper
  • Downloaded 5,512 times
  • Download rankings, all-time:
    • Site-wide: 2,003
    • In neuroscience: 107
  • Year to date:
    • Site-wide: 1,368
  • Since beginning of last month:
    • Site-wide: 1,530

Single nucleus analysis of the chromatin landscape in mouse forebrain development

genomics more details view paper
  • Downloaded 5,175 times
  • Download rankings, all-time:
    • Site-wide: 2,172
    • In genomics: 200
  • Year to date:
    • Site-wide: 59,304
  • Since beginning of last month:
    • Site-wide: 72,163

Preservation of Chromatin Organization after Acute Loss of CTCF in Mouse Embryonic Stem Cells

genomics more details view paper
  • Downloaded 5,164 times
  • Download rankings, all-time:
    • Site-wide: 2,181
    • In genomics: 201
  • Year to date:
    • Site-wide: 45,075
  • Since beginning of last month:
    • Site-wide: 35,331

Systematic mapping of chromatin state landscapes during mouse development

genomics more details view paper
  • Downloaded 4,768 times
  • Download rankings, all-time:
    • Site-wide: 2,441
    • In genomics: 244
  • Year to date:
    • Site-wide: 19,729
  • Since beginning of last month:
    • Site-wide: 22,281

An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum

neuroscience more details view paper
  • Downloaded 4,369 times
  • Download rankings, all-time:
    • Site-wide: 2,757
    • In neuroscience: 177
  • Year to date:
    • Site-wide: 2,289
  • Since beginning of last month:
    • Site-wide: 3,670

A multimodal cell census and atlas of the mammalian primary motor cortex

neuroscience more details view paper
  • Downloaded 4,194 times
  • Download rankings, all-time:
    • Site-wide: 2,927
    • In neuroscience: 196
  • Year to date:
    • Site-wide: 1,747
  • Since beginning of last month:
    • Site-wide: 1,911

DNA Methylation Atlas of the Mouse Brain at Single-Cell Resolution

genomics more details view paper
  • Downloaded 4,113 times
  • Download rankings, all-time:
    • Site-wide: 3,011
    • In genomics: 316
  • Year to date:
    • Site-wide: 2,899
  • Since beginning of last month:
    • Site-wide: 4,001

Single nucleus multi-omics links human cortical cell regulatory genome diversity to disease risk variants

genomics more details view paper
  • Downloaded 3,661 times
  • Download rankings, all-time:
    • Site-wide: 3,567
    • In genomics: 378
  • Year to date:
    • Site-wide: 3,695
  • Since beginning of last month:
    • Site-wide: 3,626

The 4D Nucleome Project

genomics more details view paper
  • Downloaded 3,165 times
  • Download rankings, all-time:
    • Site-wide: 4,379
    • In genomics: 458
  • Year to date:
    • Site-wide: 99,482
  • Since beginning of last month:
    • Site-wide: 125,068

3D Chromatin Architecture Remodeling during Human Cardiomyocyte Differentiation Reveals A Role Of HERV-H In Demarcating Chromatin Domains

genomics more details view paper
  • Downloaded 3,124 times
  • Download rankings, all-time:
    • Site-wide: 4,452
    • In genomics: 473
  • Year to date:
    • Site-wide: 32,525
  • Since beginning of last month:
    • Site-wide: 29,041

Cell type-specific enhancer-promoter connectivity maps in the human brain and disease risk association

neuroscience more details view paper
  • Downloaded 3,075 times
  • Download rankings, all-time:
    • Site-wide: 4,550
    • In neuroscience: 386
  • Year to date:
    • Site-wide: 6,432
  • Since beginning of last month:
    • Site-wide: 14,132

MAPPING OF LONG-RANGE CHROMATIN INTERACTIONS BY PROXIMITY LIGATION ASSISTED CHIP-SEQ

genomics more details view paper
  • Downloaded 2,941 times
  • Download rankings, all-time:
    • Site-wide: 4,835
    • In genomics: 501
  • Year to date:
    • Site-wide: 45,608
  • Since beginning of last month:
    • Site-wide: 71,894

A cell atlas of chromatin accessibility across 25 adult human tissues

genomics more details view paper
  • Downloaded 2,678 times
  • Download rankings, all-time:
    • Site-wide: 5,534
    • In genomics: 586
  • Year to date:
    • Site-wide: 744
  • Since beginning of last month:
    • Site-wide: 2,179

Histone H3 Lysine 4 methyltransferases MLL3 and MLL4 Modulate Long-range Chromatin Interactions at Enhancers

genomics more details view paper
  • Downloaded 2,572 times
  • Download rankings, all-time:
    • Site-wide: 5,876
    • In genomics: 627
  • Year to date:
    • Site-wide: 75,563
  • Since beginning of last month:
    • Site-wide: 85,043

Simultaneous profiling of DNA methylation and chromatin architecture in mixed populations and in single cells

genomics more details view paper
  • Downloaded 2,484 times
  • Download rankings, all-time:
    • Site-wide: 6,208
    • In genomics: 673
  • Year to date:
    • Site-wide: 52,495
  • Since beginning of last month:
    • Site-wide: 49,722

A Large-Scale Internal Validation Study of Unsupervised Virtual Trichrome Staining Technologies on Non-alcoholic Steatohepatitis Liver Biopsies

pathology more details view paper
  • Downloaded 2,391 times
  • Download rankings, all-time:
    • Site-wide: 6,553
    • In pathology: 36
  • Year to date:
    • Site-wide: 2,058
  • Since beginning of last month:
    • Site-wide: 3,518

The human functional genome defined by genetic diversity

genomics more details view paper
  • Downloaded 2,112 times
  • Download rankings, all-time:
    • Site-wide: 7,852
    • In genomics: 828
  • Year to date:
    • Site-wide: 63,793
  • Since beginning of last month:
    • Site-wide: 96,858

The changing mouse embryo transcriptome at whole tissue and single-cell resolution

developmental biology more details view paper
  • Downloaded 1,962 times
  • Download rankings, all-time:
    • Site-wide: 8,776
    • In developmental biology: 113
  • Year to date:
    • Site-wide: 16,292
  • Since beginning of last month:
    • Site-wide: 25,203

CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains

molecular biology more details view paper
  • Downloaded 1,922 times
  • Download rankings, all-time:
    • Site-wide: 9,028
    • In molecular biology: 233
  • Year to date:
    • Site-wide: 7,420
  • Since beginning of last month:
    • Site-wide: 11,734

Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus

genomics more details view paper
  • Downloaded 1,875 times
  • Download rankings, all-time:
    • Site-wide: 9,381
    • In genomics: 972
  • Year to date:
    • Site-wide: 102,912
  • Since beginning of last month:
    • Site-wide: 131,733

CTCF Promotes Long-range Enhancer-promoter Interactions and Lineage-specific Gene Expression in Mammalian Cells

genomics more details view paper
  • Downloaded 1,736 times
  • Download rankings, all-time:
    • Site-wide: 10,504
    • In genomics: 1,095
  • Year to date:
    • Site-wide: 14,010
  • Since beginning of last month:
    • Site-wide: 19,593

Comparing 3D genome organization in multiple species using Phylo-HMRF

bioinformatics more details view paper
  • Downloaded 1,728 times
  • Download rankings, all-time:
    • Site-wide: 10,565
    • In bioinformatics: 1,230
  • Year to date:
    • Site-wide: 107,246
  • Since beginning of last month:
    • Site-wide: 103,556

Cardiac Cell Type-Specific Gene Regulatory Programs and Disease Risk Association

genomics more details view paper
  • Downloaded 1,673 times
  • Download rankings, all-time:
    • Site-wide: 11,082
    • In genomics: 1,156
  • Year to date:
    • Site-wide: 8,045
  • Since beginning of last month:
    • Site-wide: 21,702

Pancreatic islet chromatin accessibility and conformation defines distal enhancer networks of type 2 diabetes risk

genomics more details view paper
  • Downloaded 1,591 times
  • Download rankings, all-time:
    • Site-wide: 11,948
    • In genomics: 1,242
  • Year to date:
    • Site-wide: 103,923
  • Since beginning of last month:
    • Site-wide: 112,408

Common DNA sequence variation influences 3-dimensional conformation of the human genome

genomics more details view paper
  • Downloaded 1,499 times
  • Download rankings, all-time:
    • Site-wide: 12,988
    • In genomics: 1,352
  • Year to date:
    • Site-wide: 126,374
  • Since beginning of last month:
    • Site-wide: 104,377

Single-cell chromatin accessibility analysis of mammary gland development reveals cell state transcriptional regulators and cellular lineage relationships

genomics more details view paper
  • Downloaded 1,451 times
  • Download rankings, all-time:
    • Site-wide: 13,678
    • In genomics: 1,409
  • Year to date:
    • Site-wide: 48,608
  • Since beginning of last month:
    • Site-wide: 66,611

Identification of essential regulatory elements in the human genome

genomics more details view paper
  • Downloaded 1,415 times
  • Download rankings, all-time:
    • Site-wide: 14,209
    • In genomics: 1,458
  • Year to date:
    • Site-wide: 95,591
  • Since beginning of last month:
    • Site-wide: 71,663

Iterative Refinement of Cellular Identity from Single-Cell Data Using Online Learning

bioinformatics more details view paper
  • Downloaded 1,286 times
  • Download rankings, all-time:
    • Site-wide: 16,418
    • In bioinformatics: 1,925
  • Year to date:
    • Site-wide: 21,006
  • Since beginning of last month:
    • Site-wide: 19,656

MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

bioinformatics more details view paper
  • Downloaded 1,173 times
  • Download rankings, all-time:
    • Site-wide: 18,813
    • In bioinformatics: 2,184
  • Year to date:
    • Site-wide: 105,254
  • Since beginning of last month:
    • Site-wide: 79,178

Genome-wide association and multi-omic analyses reveal new mechanisms for Heart Failure

genetic and genomic medicine more details view paper
  • Downloaded 1,087 times
  • Download rankings, all-time:
    • Site-wide: 20,999
    • In genetic and genomic medicine: 81
  • Year to date:
    • Site-wide: 37,240
  • Since beginning of last month:
    • Site-wide: 25,899

LSD1/KDM1A Maintains Genome-wide Homeostasis of Transcriptional Enhancers

biochemistry more details view paper
  • Downloaded 1,087 times
  • Download rankings, all-time:
    • Site-wide: 21,026
    • In biochemistry: 443
  • Year to date:
    • Site-wide: 53,938
  • Since beginning of last month:
    • Site-wide: 49,696

DNA replication-mediated error correction of ectopic CENP-A deposition maintains centromere identity

cell biology more details view paper
  • Downloaded 832 times
  • Download rankings, all-time:
    • Site-wide: 30,884
    • In cell biology: 1,167
  • Year to date:
    • Site-wide: 120,657
  • Since beginning of last month:
    • Site-wide: 136,480

An Array of 60,000 Antibodies for Proteome-Scale Antibody Generation and Target Discovery

systems biology more details view paper
  • Downloaded 782 times
  • Download rankings, all-time:
    • Site-wide: 33,666
    • In systems biology: 718
  • Year to date:
    • Site-wide: 103,044
  • Since beginning of last month:
    • Site-wide: 66,415

HUGIn: Hi-C Unifying Genomic Interrogator

genetics more details view paper
  • Downloaded 740 times
  • Download rankings, all-time:
    • Site-wide: 36,380
    • In genetics: 1,677
  • Year to date:
    • Site-wide: 137,610
  • Since beginning of last month:
    • Site-wide: 121,149

SnapHiC: a computational pipeline to map chromatin contacts from single cell Hi-C data

bioinformatics more details view paper
  • Downloaded 666 times
  • Download rankings, all-time:
    • Site-wide: 41,866
    • In bioinformatics: 4,471
  • Year to date:
    • Site-wide: 10,107
  • Since beginning of last month:
    • Site-wide: 13,472

Parallel Characterization of cis-Regulatory Elements for Multiple Genes Using CRISPRpath

genomics more details view paper
  • Downloaded 651 times
  • Download rankings, all-time:
    • Site-wide: 43,133
    • In genomics: 3,483
  • Year to date:
    • Site-wide: 5,069
  • Since beginning of last month:
    • Site-wide: 15,065

Three-dimensional organization of chromatin associated RNAs and their role in chromatin architecture in human cells

genomics more details view paper
  • Downloaded 628 times
  • Download rankings, all-time:
    • Site-wide: 45,113
    • In genomics: 3,600
  • Year to date:
    • Site-wide: 5,348
  • Since beginning of last month:
    • Site-wide: 612

A dual mechanism of enhancer activation by FOXA pioneer factors induces endodermal organ fates

genomics more details view paper
  • Downloaded 574 times
  • Download rankings, all-time:
    • Site-wide: 50,485
    • In genomics: 3,897
  • Year to date:
    • Site-wide: 22,460
  • Since beginning of last month:
    • Site-wide: 15,872

FIREcaller: Detecting Frequently Interacting Regions from Hi-C Data

bioinformatics more details view paper
  • Downloaded 548 times
  • Download rankings, all-time:
    • Site-wide: 53,441
    • In bioinformatics: 5,423
  • Year to date:
    • Site-wide: 87,108
  • Since beginning of last month:
    • Site-wide: 112,775

Multi-tissue integrative analysis of personal epigenomes

genomics more details view paper
  • Downloaded 540 times
  • Download rankings, all-time:
    • Site-wide: 54,366
    • In genomics: 4,117
  • Year to date:
    • Site-wide: 6,696
  • Since beginning of last month:
    • Site-wide: 10,954

Discovery and Functional Characterization of Pro-growth Enhancers in Human Cancer Cells

cancer biology more details view paper
  • Downloaded 502 times
  • Download rankings, all-time:
    • Site-wide: 59,204
    • In cancer biology: 1,678
  • Year to date:
    • Site-wide: 7,459
  • Since beginning of last month:
    • Site-wide: 18,070

Pancreatic progenitor epigenome maps prioritize type 2 diabetes risk genes with roles in development

genomics more details view paper
  • Downloaded 470 times
  • Download rankings, all-time:
    • Site-wide: 63,564
    • In genomics: 4,557
  • Year to date:
    • Site-wide: 54,992
  • Since beginning of last month:
    • Site-wide: 58,821

MLL3/MLL4 Histone Methyltranferase Activity Dependent Chromatin Organization at Enhancers during Embryonic Stem Cell Differentiation

cell biology more details view paper
  • Downloaded 391 times
  • Download rankings, all-time:
    • Site-wide: 76,584
    • In cell biology: 3,503
  • Year to date:
    • Site-wide: 10,685
  • Since beginning of last month:
    • Site-wide: 16,158

A β-catenin-driven switch in TCF/LEF transcription factor binding to DNA target sites promotes commitment of mammalian nephron progenitor cells

developmental biology more details view paper
  • Downloaded 266 times
  • Download rankings, all-time:
    • Site-wide: 103,017
    • In developmental biology: 2,773
  • Year to date:
    • Site-wide: 73,460
  • Since beginning of last month:
    • Site-wide: 90,971

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