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Author: Bing Ren

Rankings

  • All-time downloads: 121,928 (rank: 1,004 )
  • Categories:
    • biochemistry: 1,127 (rank: 5,449 (tie) )
    • bioinformatics: 15,377 (rank: 475 )
    • cancer biology: 617 (rank: 17,787 (tie) )
    • cell biology: 1,398 (rank: 6,641 (tie) )
    • developmental biology: 2,312 (rank: 1,481 (tie) )
    • genetic and genomic medicine: 1,138 (rank: 3,559 (tie) )
    • genetics: 749 (rank: 21,451 (tie) )
    • genomics: 68,015 (rank: 136 )
    • molecular biology: 2,011 (rank: 2,897 (tie) )
    • neuroscience: 25,847 (rank: 239 )
    • pathology: 2,530 (rank: 549 (tie) )
    • systems biology: 807 (rank: 6,236 (tie) )

Downloads per author, site-wide

Preprints

SnapATAC: A Comprehensive Analysis Package for Single Cell ATAC-seq

bioinformatics more details view paper
  • Downloaded 9,711 times
  • Download rankings, all-time:
    • Site-wide: 1,080
    • In bioinformatics: 50
  • Year to date:
    • Site-wide: 2,412
  • Since beginning of last month:
    • Site-wide: 13,094

Multi-platform discovery of haplotype-resolved structural variation in human genomes

genomics more details view paper
  • Downloaded 8,453 times
  • Download rankings, all-time:
    • Site-wide: 1,288
    • In genomics: 101
  • Year to date:
    • Site-wide: 62,132
  • Since beginning of last month:
    • Site-wide: 61,032

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

neuroscience more details view paper
  • Downloaded 6,723 times
  • Download rankings, all-time:
    • Site-wide: 1,709
    • In neuroscience: 79
  • Year to date:
    • Site-wide: 1,333
  • Since beginning of last month:
    • Site-wide: 1,513

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

neuroscience more details view paper
  • Downloaded 6,382 times
  • Download rankings, all-time:
    • Site-wide: 1,847
    • In neuroscience: 89
  • Year to date:
    • Site-wide: 1,244
  • Since beginning of last month:
    • Site-wide: 1,108

Preservation of Chromatin Organization after Acute Loss of CTCF in Mouse Embryonic Stem Cells

genomics more details view paper
  • Downloaded 5,233 times
  • Download rankings, all-time:
    • Site-wide: 2,391
    • In genomics: 210
  • Year to date:
    • Site-wide: 44,687
  • Since beginning of last month:
    • Site-wide: 43,709

Single nucleus analysis of the chromatin landscape in mouse forebrain development

genomics more details view paper
  • Downloaded 5,203 times
  • Download rankings, all-time:
    • Site-wide: 2,408
    • In genomics: 214
  • Year to date:
    • Site-wide: 73,080
  • Since beginning of last month:
    • Site-wide: 83,550

Systematic mapping of chromatin state landscapes during mouse development

genomics more details view paper
  • Downloaded 4,861 times
  • Download rankings, all-time:
    • Site-wide: 2,664
    • In genomics: 253
  • Year to date:
    • Site-wide: 21,412
  • Since beginning of last month:
    • Site-wide: 33,570

A multimodal cell census and atlas of the mammalian primary motor cortex

neuroscience more details view paper
  • Downloaded 4,850 times
  • Download rankings, all-time:
    • Site-wide: 2,674
    • In neuroscience: 156
  • Year to date:
    • Site-wide: 1,632
  • Since beginning of last month:
    • Site-wide: 1,136

An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum

neuroscience more details view paper
  • Downloaded 4,746 times
  • Download rankings, all-time:
    • Site-wide: 2,752
    • In neuroscience: 166
  • Year to date:
    • Site-wide: 2,438
  • Since beginning of last month:
    • Site-wide: 4,055

DNA Methylation Atlas of the Mouse Brain at Single-Cell Resolution

genomics more details view paper
  • Downloaded 4,577 times
  • Download rankings, all-time:
    • Site-wide: 2,881
    • In genomics: 283
  • Year to date:
    • Site-wide: 2,633
  • Since beginning of last month:
    • Site-wide: 2,377

Single nucleus multi-omics links human cortical cell regulatory genome diversity to disease risk variants

genomics more details view paper
  • Downloaded 3,903 times
  • Download rankings, all-time:
    • Site-wide: 3,619
    • In genomics: 366
  • Year to date:
    • Site-wide: 4,022
  • Since beginning of last month:
    • Site-wide: 8,148

A cell atlas of chromatin accessibility across 25 adult human tissues

genomics more details view paper
  • Downloaded 3,442 times
  • Download rankings, all-time:
    • Site-wide: 4,283
    • In genomics: 429
  • Year to date:
    • Site-wide: 842
  • Since beginning of last month:
    • Site-wide: 1,037

3D Chromatin Architecture Remodeling during Human Cardiomyocyte Differentiation Reveals A Role Of HERV-H In Demarcating Chromatin Domains

genomics more details view paper
  • Downloaded 3,206 times
  • Download rankings, all-time:
    • Site-wide: 4,755
    • In genomics: 479
  • Year to date:
    • Site-wide: 32,948
  • Since beginning of last month:
    • Site-wide: 33,523

The 4D Nucleome Project

genomics more details view paper
  • Downloaded 3,199 times
  • Download rankings, all-time:
    • Site-wide: 4,768
    • In genomics: 482
  • Year to date:
    • Site-wide: 102,272
  • Since beginning of last month:
    • Site-wide: 99,573

Cell type-specific enhancer-promoter connectivity maps in the human brain and disease risk association

neuroscience more details view paper
  • Downloaded 3,146 times
  • Download rankings, all-time:
    • Site-wide: 4,867
    • In neuroscience: 393
  • Year to date:
    • Site-wide: 8,822
  • Since beginning of last month:
    • Site-wide: 44,332

MAPPING OF LONG-RANGE CHROMATIN INTERACTIONS BY PROXIMITY LIGATION ASSISTED CHIP-SEQ

genomics more details view paper
  • Downloaded 2,977 times
  • Download rankings, all-time:
    • Site-wide: 5,277
    • In genomics: 526
  • Year to date:
    • Site-wide: 56,102
  • Since beginning of last month:
    • Site-wide: 78,009

Histone H3 Lysine 4 methyltransferases MLL3 and MLL4 Modulate Long-range Chromatin Interactions at Enhancers

genomics more details view paper
  • Downloaded 2,616 times
  • Download rankings, all-time:
    • Site-wide: 6,378
    • In genomics: 651
  • Year to date:
    • Site-wide: 77,694
  • Since beginning of last month:
    • Site-wide: 99,958

Simultaneous profiling of DNA methylation and chromatin architecture in mixed populations and in single cells

genomics more details view paper
  • Downloaded 2,547 times
  • Download rankings, all-time:
    • Site-wide: 6,637
    • In genomics: 686
  • Year to date:
    • Site-wide: 52,042
  • Since beginning of last month:
    • Site-wide: 100,180

A Large-Scale Internal Validation Study of Unsupervised Virtual Trichrome Staining Technologies on Non-alcoholic Steatohepatitis Liver Biopsies

pathology more details view paper
  • Downloaded 2,434 times
  • Download rankings, all-time:
    • Site-wide: 7,079
    • In pathology: 41
  • Year to date:
    • Site-wide: 3,095
  • Since beginning of last month:
    • Site-wide: 74,389

The human functional genome defined by genetic diversity

genomics more details view paper
  • Downloaded 2,177 times
  • Download rankings, all-time:
    • Site-wide: 8,343
    • In genomics: 845
  • Year to date:
    • Site-wide: 59,017
  • Since beginning of last month:
    • Site-wide: 34,984

The changing mouse embryo transcriptome at whole tissue and single-cell resolution

developmental biology more details view paper
  • Downloaded 2,013 times
  • Download rankings, all-time:
    • Site-wide: 9,319
    • In developmental biology: 116
  • Year to date:
    • Site-wide: 21,693
  • Since beginning of last month:
    • Site-wide: 55,038

CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains

molecular biology more details view paper
  • Downloaded 2,011 times
  • Download rankings, all-time:
    • Site-wide: 9,338
    • In molecular biology: 231
  • Year to date:
    • Site-wide: 9,531
  • Since beginning of last month:
    • Site-wide: 24,130

Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus

genomics more details view paper
  • Downloaded 1,921 times
  • Download rankings, all-time:
    • Site-wide: 9,989
    • In genomics: 998
  • Year to date:
    • Site-wide: 94,219
  • Since beginning of last month:
    • Site-wide: 57,733

CTCF Promotes Long-range Enhancer-promoter Interactions and Lineage-specific Gene Expression in Mammalian Cells

genomics more details view paper
  • Downloaded 1,829 times
  • Download rankings, all-time:
    • Site-wide: 10,766
    • In genomics: 1,080
  • Year to date:
    • Site-wide: 16,164
  • Since beginning of last month:
    • Site-wide: 28,141

Comparing 3D genome organization in multiple species using Phylo-HMRF

bioinformatics more details view paper
  • Downloaded 1,750 times
  • Download rankings, all-time:
    • Site-wide: 11,504
    • In bioinformatics: 1,292
  • Year to date:
    • Site-wide: 119,327
  • Since beginning of last month:
    • Site-wide: 118,253

Cardiac Cell Type-Specific Gene Regulatory Programs and Disease Risk Association

genomics more details view paper
  • Downloaded 1,716 times
  • Download rankings, all-time:
    • Site-wide: 11,836
    • In genomics: 1,188
  • Year to date:
    • Site-wide: 11,684
  • Since beginning of last month:
    • Site-wide: 64,317

Pancreatic islet chromatin accessibility and conformation defines distal enhancer networks of type 2 diabetes risk

genomics more details view paper
  • Downloaded 1,618 times
  • Download rankings, all-time:
    • Site-wide: 12,878
    • In genomics: 1,302
  • Year to date:
    • Site-wide: 111,850
  • Since beginning of last month:
    • Site-wide: 109,787

Common DNA sequence variation influences 3-dimensional conformation of the human genome

genomics more details view paper
  • Downloaded 1,513 times
  • Download rankings, all-time:
    • Site-wide: 14,210
    • In genomics: 1,420
  • Year to date:
    • Site-wide: 142,692
  • Since beginning of last month:
    • Site-wide: 124,303

Single-cell chromatin accessibility analysis of mammary gland development reveals cell state transcriptional regulators and cellular lineage relationships

genomics more details view paper
  • Downloaded 1,490 times
  • Download rankings, all-time:
    • Site-wide: 14,581
    • In genomics: 1,452
  • Year to date:
    • Site-wide: 57,734
  • Since beginning of last month:
    • Site-wide: 107,684

Identification of essential regulatory elements in the human genome

genomics more details view paper
  • Downloaded 1,455 times
  • Download rankings, all-time:
    • Site-wide: 15,140
    • In genomics: 1,503
  • Year to date:
    • Site-wide: 94,276
  • Since beginning of last month:
    • Site-wide: 61,492

Iterative Refinement of Cellular Identity from Single-Cell Data Using Online Learning

bioinformatics more details view paper
  • Downloaded 1,352 times
  • Download rankings, all-time:
    • Site-wide: 16,935
    • In bioinformatics: 1,937
  • Year to date:
    • Site-wide: 25,272
  • Since beginning of last month:
    • Site-wide: 47,576

Three-dimensional organization of chromatin associated RNAs and their role in chromatin architecture in human cells

genomics more details view paper
  • Downloaded 1,321 times
  • Download rankings, all-time:
    • Site-wide: 17,513
    • In genomics: 1,697
  • Year to date:
    • Site-wide: 2,947
  • Since beginning of last month:
    • Site-wide: 4,015

MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

bioinformatics more details view paper
  • Downloaded 1,208 times
  • Download rankings, all-time:
    • Site-wide: 20,013
    • In bioinformatics: 2,285
  • Year to date:
    • Site-wide: 104,954
  • Since beginning of last month:
    • Site-wide: 127,809

Genome-wide association and multi-omic analyses reveal new mechanisms for Heart Failure

genetic and genomic medicine more details view paper
  • Downloaded 1,138 times
  • Download rankings, all-time:
    • Site-wide: 21,850
    • In genetic and genomic medicine: 98
  • Year to date:
    • Site-wide: 43,163
  • Since beginning of last month:
    • Site-wide: 58,211

LSD1/KDM1A Maintains Genome-wide Homeostasis of Transcriptional Enhancers

biochemistry more details view paper
  • Downloaded 1,127 times
  • Download rankings, all-time:
    • Site-wide: 22,160
    • In biochemistry: 479
  • Year to date:
    • Site-wide: 62,175
  • Since beginning of last month:
    • Site-wide: 78,330

DNA replication-mediated error correction of ectopic CENP-A deposition maintains centromere identity

cell biology more details view paper
  • Downloaded 872 times
  • Download rankings, all-time:
    • Site-wide: 32,244
    • In cell biology: 1,229
  • Year to date:
    • Site-wide: 110,259
  • Since beginning of last month:
    • Site-wide: 108,783

Parallel Characterization of cis-Regulatory Elements for Multiple Genes Using CRISPRpath

genomics more details view paper
  • Downloaded 867 times
  • Download rankings, all-time:
    • Site-wide: 32,524
    • In genomics: 2,784
  • Year to date:
    • Site-wide: 5,365
  • Since beginning of last month:
    • Site-wide: 3,634

An Array of 60,000 Antibodies for Proteome-Scale Antibody Generation and Target Discovery

systems biology more details view paper
  • Downloaded 807 times
  • Download rankings, all-time:
    • Site-wide: 35,951
    • In systems biology: 751
  • Year to date:
    • Site-wide: 113,213
  • Since beginning of last month:
    • Site-wide: 100,329

SnapHiC: a computational pipeline to map chromatin contacts from single cell Hi-C data

bioinformatics more details view paper
  • Downloaded 788 times
  • Download rankings, all-time:
    • Site-wide: 37,254
    • In bioinformatics: 4,005
  • Year to date:
    • Site-wide: 11,279
  • Since beginning of last month:
    • Site-wide: 36,751

HUGIn: Hi-C Unifying Genomic Interrogator

genetics more details view paper
  • Downloaded 749 times
  • Download rankings, all-time:
    • Site-wide: 39,997
    • In genetics: 1,762
  • Year to date:
    • Site-wide: 154,106
  • Since beginning of last month:
    • Site-wide: 157,036

A dual mechanism of enhancer activation by FOXA pioneer factors induces endodermal organ fates

genomics more details view paper
  • Downloaded 712 times
  • Download rankings, all-time:
    • Site-wide: 42,843
    • In genomics: 3,421
  • Year to date:
    • Site-wide: 19,482
  • Since beginning of last month:
    • Site-wide: 13,920

Multi-tissue integrative analysis of personal epigenomes

genomics more details view paper
  • Downloaded 671 times
  • Download rankings, all-time:
    • Site-wide: 46,400
    • In genomics: 3,626
  • Year to date:
    • Site-wide: 7,884
  • Since beginning of last month:
    • Site-wide: 15,950

Discovery and Functional Characterization of Pro-growth Enhancers in Human Cancer Cells

cancer biology more details view paper
  • Downloaded 617 times
  • Download rankings, all-time:
    • Site-wide: 51,782
    • In cancer biology: 1,475
  • Year to date:
    • Site-wide: 8,984
  • Since beginning of last month:
    • Site-wide: 19,884

FIREcaller: Detecting Frequently Interacting Regions from Hi-C Data

bioinformatics more details view paper
  • Downloaded 568 times
  • Download rankings, all-time:
    • Site-wide: 57,462
    • In bioinformatics: 5,702
  • Year to date:
    • Site-wide: 104,731
  • Since beginning of last month:
    • Site-wide: 127,568

MLL3/MLL4 Histone Methyltranferase Activity Dependent Chromatin Organization at Enhancers during Embryonic Stem Cell Differentiation

cell biology more details view paper
  • Downloaded 526 times
  • Download rankings, all-time:
    • Site-wide: 62,840
    • In cell biology: 2,773
  • Year to date:
    • Site-wide: 11,405
  • Since beginning of last month:
    • Site-wide: 7,706

Pancreatic progenitor epigenome maps prioritize type 2 diabetes risk genes with roles in development

genomics more details view paper
  • Downloaded 508 times
  • Download rankings, all-time:
    • Site-wide: 65,439
    • In genomics: 4,642
  • Year to date:
    • Site-wide: 64,412
  • Since beginning of last month:
    • Site-wide: 74,700

A β-catenin-driven switch in TCF/LEF transcription factor binding to DNA target sites promotes commitment of mammalian nephron progenitor cells

developmental biology more details view paper
  • Downloaded 299 times
  • Download rankings, all-time:
    • Site-wide: 106,815
    • In developmental biology: 2,883
  • Year to date:
    • Site-wide: 82,887
  • Since beginning of last month:
    • Site-wide: 74,111

Bridge Category Models: Development of Bayesian Modelling Procedures to Account for Bridge Ordinal Ratings for Disease Staging

pathology more details view paper
  • Downloaded 96 times
  • Download rankings, all-time:
    • Site-wide: 153,872
    • In pathology: 955
  • Year to date:
    • Site-wide: 90,302
  • Since beginning of last month:
    • Site-wide: 23,234

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