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Author: Xuegong Zhang

Rankings

  • All-time downloads: 20,481 (rank: 11,359 )
  • Categories:
    • bioinformatics: 14,739 (rank: 537 )
    • genomics: 4,445 (rank: 6,269 (tie) )
    • molecular biology: 1,297 (rank: 5,549 (tie) )

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Preprints

dbSUPER: a database of super-enhancers in mouse and human genome

bioinformatics more details view paper
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    • Site-wide: 6,168
    • In bioinformatics: 615
  • Year to date:
    • Site-wide: 79,023
  • Since beginning of last month:
    • Site-wide: 116,312

Integrative analysis reveals genomic and epigenomic signatures of super-enhancers and its constituents

genomics more details view paper
  • Downloaded 2,548 times
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    • Site-wide: 6,974
    • In genomics: 715
  • Year to date:
    • Site-wide: 28,725
  • Since beginning of last month:
    • Site-wide: 73,602

DEsingle for detecting three types of differential expression in single-cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 2,181 times
  • Download rankings, all-time:
    • Site-wide: 8,757
    • In bioinformatics: 963
  • Year to date:
    • Site-wide: 41,983
  • Since beginning of last month:
    • Site-wide: 96,713

Super-enhancers are transcriptionally more active and cell-type-specific than stretch enhancers

genomics more details view paper
  • Downloaded 1,897 times
  • Download rankings, all-time:
    • Site-wide: 10,791
    • In genomics: 1,060
  • Year to date:
    • Site-wide: 100,715
  • Since beginning of last month:
    • Site-wide: 133,337

Precise temporal regulation of alternative splicing during neural development

molecular biology more details view paper
  • Downloaded 1,297 times
  • Download rankings, all-time:
    • Site-wide: 19,234
    • In molecular biology: 518
  • Year to date:
    • Site-wide: 141,884
  • Since beginning of last month:
    • Site-wide: 149,758

SIP: An Interchangeable Pipeline for scRNA-seq Data Processing

bioinformatics more details view paper
  • Downloaded 1,000 times
  • Download rankings, all-time:
    • Site-wide: 28,470
    • In bioinformatics: 3,160
  • Year to date:
    • Site-wide: 85,887
  • Since beginning of last month:
    • Site-wide: 112,057

scRecover: Discriminating true and false zeros in single-cell RNA-seq data for imputation

bioinformatics more details view paper
  • Downloaded 929 times
  • Download rankings, all-time:
    • Site-wide: 31,780
    • In bioinformatics: 3,477
  • Year to date:
    • Site-wide: 47,523
  • Since beginning of last month:
    • Site-wide: 91,237

scMetric: An R package of metric learning and visualization for single-cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 817 times
  • Download rankings, all-time:
    • Site-wide: 38,269
    • In bioinformatics: 4,097
  • Year to date:
    • Site-wide: 82,433
  • Since beginning of last month:
    • Site-wide: 77,213

Single cell transcriptomes reveal characteristics of miRNA in gene expression noise reduction

bioinformatics more details view paper
  • Downloaded 730 times
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    • Site-wide: 44,963
    • In bioinformatics: 4,692
  • Year to date:
    • Site-wide: 107,717
  • Since beginning of last month:
    • Site-wide: 87,460

Characterization of kinase gene expression and splicing profile in prostate cancer with RNA-Seq data

bioinformatics more details view paper
  • Downloaded 712 times
  • Download rankings, all-time:
    • Site-wide: 46,541
    • In bioinformatics: 4,805
  • Year to date:
    • Site-wide: 138,648
  • Since beginning of last month:
    • Site-wide: 159,811

SCeQTL: an R package for identifying eQTL from single-cell parallel sequencing data

bioinformatics more details view paper
  • Downloaded 710 times
  • Download rankings, all-time:
    • Site-wide: 46,748
    • In bioinformatics: 4,820
  • Year to date:
    • Site-wide: 152,774
  • Since beginning of last month:
    • Site-wide: 145,947

A new statistic for efficient detection of repetitive sequences

bioinformatics more details view paper
  • Downloaded 657 times
  • Download rankings, all-time:
    • Site-wide: 51,923
    • In bioinformatics: 5,200
  • Year to date:
    • Site-wide: 80,827
  • Since beginning of last month:
    • Site-wide: 44,509

OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions

bioinformatics more details view paper
  • Downloaded 640 times
  • Download rankings, all-time:
    • Site-wide: 53,843
    • In bioinformatics: 5,366
  • Year to date:
    • Site-wide: 44,310
  • Since beginning of last month:
    • Site-wide: 21,201

SOMDE: A scalable method for identifying spatially variable genes with self-organizing map

bioinformatics more details view paper
  • Downloaded 637 times
  • Download rankings, all-time:
    • Site-wide: 54,238
    • In bioinformatics: 5,386
  • Year to date:
    • Site-wide: 15,694
  • Since beginning of last month:
    • Site-wide: 10,804

hECA: the cell-centric assembly of a cell atlas

bioinformatics more details view paper
  • Downloaded 632 times
  • Download rankings, all-time:
    • Site-wide: 54,760
    • In bioinformatics: 5,443
  • Year to date:
    • Site-wide: 11,017
  • Since beginning of last month:
    • Site-wide: 4,679

A case study on the detailed reproducibility of a human cell atlas project

bioinformatics more details view paper
  • Downloaded 505 times
  • Download rankings, all-time:
    • Site-wide: 72,092
    • In bioinformatics: 6,748
  • Year to date:
    • Site-wide: 160,649
  • Since beginning of last month:
    • Site-wide: 159,654

HGC: fast hierarchical clustering for large-scale single-cell data

bioinformatics more details view paper
  • Downloaded 498 times
  • Download rankings, all-time:
    • Site-wide: 73,245
    • In bioinformatics: 6,829
  • Year to date:
    • Site-wide: 15,904
  • Since beginning of last month:
    • Site-wide: 22,931

stPlus: a reference-based method for the accurate enhancement of spatial transcriptomics

bioinformatics more details view paper
  • Downloaded 444 times
  • Download rankings, all-time:
    • Site-wide: 83,020
    • In bioinformatics: 7,481
  • Year to date:
    • Site-wide: 19,059
  • Since beginning of last month:
    • Site-wide: 13,178

ARIC: Accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data

bioinformatics more details view paper
  • Downloaded 327 times
  • Download rankings, all-time:
    • Site-wide: 109,310
    • In bioinformatics: 9,131
  • Year to date:
    • Site-wide: 30,183
  • Since beginning of last month:
    • Site-wide: 31,906

Discovering single-cell eQTLs from scRNA-seq data only

bioinformatics more details view paper
  • Downloaded 322 times
  • Download rankings, all-time:
    • Site-wide: 110,741
    • In bioinformatics: 9,198
  • Year to date:
    • Site-wide: 30,885
  • Since beginning of last month:
    • Site-wide: 24,593

A General Framework for Representing and Annotating Multifaceted Cell Heterogeneity in Human Cell Atlas

bioinformatics more details view paper
  • Downloaded 234 times
  • Download rankings, all-time:
    • Site-wide: 133,582
    • In bioinformatics: 10,521
  • Year to date:
    • Site-wide: 47,439
  • Since beginning of last month:
    • Site-wide: 18,774

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