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Author: Jeffrey J. Gray

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    • biophysics: 10,289 (rank: 84 out of 16,811)
    • immunology: 406 (rank: 12,032 (tie) out of 23,479)
    • synthetic biology: 253 (rank: 3,795 (tie) out of 4,220)

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Preprints

The Rosetta all-atom energy function for macromolecular modeling and design

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Modeling and docking antibody structures with Rosetta

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Geometric Potentials from Deep Learning Improve Prediction of CDR H3 Loop Structures

biophysics more details view paper
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Protein structure prediction and design in a biologically-realistic implicit membrane

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Efficient Flexible Backbone Protein-Protein Docking for Challenging Targets

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Flexible backbone assembly and refinement of symmetrical homomeric complexes

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Comparison Of NMR And Crystal Structures Of Membrane Proteins And Computational Refinement To Improve Model Quality

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Repertoire analysis of antibody CDR-H3 loops suggests affinity maturation does not typically result in rigidification

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Affinity-engineered human antibodies detect celiac disease gluten pMHC complexes and inhibit T-cell activation

immunology more details view paper
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Toward computational design of protein crystals with improved resolution

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Novel sampling strategies and a coarse-grained score function for docking homomers, flexible heteromers, and oligosaccharides using Rosetta in CAPRI Rounds 37–45

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High-resolution mapping of glycoprotein structure-activity relationships by shotgun scanning glycomutagenesis

synthetic biology more details view paper
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Protein Docking and Steered Molecular Dynamics Reveal Alternative Regulatory Sites on the SERCA Calcium Transporter

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Robustification of RosettaAntibody and Rosetta SnugDock

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Diverse scientific benchmarks for implicit membrane energy functions

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Structural basis for peptide substrate specificities of glycosyltransferase GalNAc-T2

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