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Author: Nicola Segata

Rankings

  • All-time downloads: 21,853 (rank: 10,119 )
  • Categories:
    • bioinformatics: 5,605 (rank: 2,415 (tie) )
    • epidemiology: 1,394 (rank: 9,198 (tie) )
    • evolutionary biology: 519 (rank: 15,069 (tie) )
    • genomics: 487 (rank: 39,541 (tie) )
    • microbiology: 13,848 (rank: 1,353 (tie) )

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Preprints

Evolutionary epidemiology of a zoonosis

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Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

microbiology more details view paper
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    • Site-wide: 3,391
    • In microbiology: 242
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A unified sequence catalogue of over 280,000 genomes obtained from the human gut microbiome

microbiology more details view paper
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    • Site-wide: 3,716
    • In microbiology: 258
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    • Site-wide: 30,545
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Accessible, curated metagenomic data through ExperimentHub

bioinformatics more details view paper
  • Downloaded 2,519 times
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    • Site-wide: 6,785
    • In bioinformatics: 713
  • Year to date:
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The Prevotella copri complex comprises four distinct clades that are underrepresented in Westernised populations

microbiology more details view paper
  • Downloaded 1,770 times
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    • Site-wide: 11,357
    • In microbiology: 677
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HMP16SData: Efficient Access to the Human Microbiome Project through Bioconductor

bioinformatics more details view paper
  • Downloaded 1,691 times
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    • Site-wide: 12,149
    • In bioinformatics: 1,377
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Critical Assessment of Metagenome Interpretation - the second round of challenges

bioinformatics more details view paper
  • Downloaded 1,395 times
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    • Site-wide: 16,266
    • In bioinformatics: 1,852
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Studying vertical microbiome transmission from mothers to infants by strain-level metagenomic profiling

microbiology more details view paper
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    • Site-wide: 20,794
    • In microbiology: 1,218
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Distinct polysaccharide growth profiles of human intestinal Prevotella copri isolates

microbiology more details view paper
  • Downloaded 1,123 times
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    • Site-wide: 22,428
    • In microbiology: 1,311
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Sociodemographic patterning in the oral microbiome of a diverse sample of New Yorkers

epidemiology more details view paper
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    • Site-wide: 33,333
    • In epidemiology: 1,768
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Taxonomic variability over functional stability in the microbiome of Cystic Fibrosis patients chronically infected by Pseudomonas aeruginosa

microbiology more details view paper
  • Downloaded 770 times
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    • Site-wide: 38,775
    • In microbiology: 2,336
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Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination Study

epidemiology more details view paper
  • Downloaded 537 times
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    • Site-wide: 61,868
    • In epidemiology: 2,802
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The diverging evolutionary history of opsin genes in Diptera

evolutionary biology more details view paper
  • Downloaded 519 times
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    • Site-wide: 64,465
    • In evolutionary biology: 3,246
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    • Site-wide: 47,185
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Strengthening The Organizing and Reporting of Microbiome Studies (STORMS)

genomics more details view paper
  • Downloaded 487 times
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    • Site-wide: 69,204
    • In genomics: 4,817
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Wide distribution of alternatively coded Lak megaphages in animal microbiomes

microbiology more details view paper
  • Downloaded 463 times
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    • Site-wide: 73,100
    • In microbiology: 4,849
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    • Site-wide: 14,219
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A step-by-step sequence-based analysis of virome enrichment protocol for freshwater and sediment samples

microbiology more details view paper
  • Downloaded 350 times
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    • Site-wide: 95,470
    • In microbiology: 6,657
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    • Site-wide: 43,956
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    • Site-wide: 51,193

The signal and the noise - characteristics of antisense RNA in complex microbial communities

microbiology more details view paper
  • Downloaded 267 times
  • Download rankings, all-time:
    • Site-wide: 116,108
    • In microbiology: 8,337
  • Year to date:
    • Site-wide: 153,226
  • Since beginning of last month:
    • Site-wide: 156,931

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