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Author: Jian Ma

Rankings

  • All-time downloads: 45,747 (rank: 4,382 )
  • Categories:
    • animal behavior and cognition: 2,364 (rank: 449 (tie) )
    • bioinformatics: 23,889 (rank: 166 )
    • biophysics: 454 (rank: 14,882 (tie) )
    • cancer biology: 845 (rank: 13,738 (tie) )
    • cell biology: 1,507 (rank: 6,512 (tie) )
    • developmental biology: 308 (rank: 18,378 (tie) )
    • genetics: 946 (rank: 18,583 (tie) )
    • genomics: 5,667 (rank: 4,634 (tie) )
    • infectious diseases: 1,856 (rank: 20,837 (tie) )
    • microbiology: 7,046 (rank: 2,471 (tie) )
    • neuroscience: 647 (rank: 45,328 (tie) )
    • plant biology: 218 (rank: 20,539 (tie) )

Downloads per author, site-wide

Preprints

Selective clonal persistence of human retroviruses in vivo: radial chromatin organization, integration site and host transcription

microbiology more details view paper

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A live attenuated influenza virus-vectored intranasal COVID-19 vaccine provides rapid, prolonged, and broad protection against SARS-CoV-2 infection

pathology more details view paper

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Predicting Enhancer-Promoter Interaction from Genomic Sequence with Deep Neural Networks

bioinformatics more details view paper
  • Downloaded 5,784 times
  • Download rankings, all-time:
    • Site-wide: 2,183
    • In bioinformatics: 156
  • Year to date:
    • Site-wide: 54,273
  • Since beginning of last month:
    • Site-wide: 125,131

Robust neutralization assay based on SARS-CoV-2 S-bearing vesicular stomatitis virus (VSV) pseudovirus and ACE2-overexpressed BHK21 cells

microbiology more details view paper
  • Downloaded 4,208 times
  • Download rankings, all-time:
    • Site-wide: 3,377
    • In microbiology: 238
  • Year to date:
    • Site-wide: 13,975
  • Since beginning of last month:
    • Site-wide: 116,158

Alignathon: A competitive assessment of whole genome alignment methods.

bioinformatics more details view paper
  • Downloaded 3,388 times
  • Download rankings, all-time:
    • Site-wide: 4,589
    • In bioinformatics: 428
  • Year to date:
    • Site-wide: 108,528
  • Since beginning of last month:
    • Site-wide: 147,109

TSA-Seq Mapping of Nuclear Genome Organization

genomics more details view paper
  • Downloaded 2,744 times
  • Download rankings, all-time:
    • Site-wide: 6,220
    • In genomics: 626
  • Year to date:
    • Site-wide: 101,477
  • Since beginning of last month:
    • Site-wide: 98,431

SPICEMIX: Integrative single-cell spatial modeling for inferring cell identity

bioinformatics more details view paper
  • Downloaded 2,277 times
  • Download rankings, all-time:
    • Site-wide: 8,217
    • In bioinformatics: 910
  • Year to date:
    • Site-wide: 2,841
  • Since beginning of last month:
    • Site-wide: 2,910

Multiscale and integrative single-cell Hi-C analysis with Higashi

bioinformatics more details view paper
  • Downloaded 2,026 times
  • Download rankings, all-time:
    • Site-wide: 9,727
    • In bioinformatics: 1,095
  • Year to date:
    • Site-wide: 2,496
  • Since beginning of last month:
    • Site-wide: 4,166

The prevalence of antibodies to SARS-CoV-2 among blood donors in China

infectious diseases more details view paper
  • Downloaded 1,856 times
  • Download rankings, all-time:
    • Site-wide: 11,133
    • In infectious diseases: 1,543
  • Year to date:
    • Site-wide: 15,401
  • Since beginning of last month:
    • Site-wide: 45,399

Comparing 3D genome organization in multiple species using Phylo-HMRF

bioinformatics more details view paper
  • Downloaded 1,756 times
  • Download rankings, all-time:
    • Site-wide: 12,049
    • In bioinformatics: 1,344
  • Year to date:
    • Site-wide: 139,964
  • Since beginning of last month:
    • Site-wide: 159,502

Prediction of migratory routes of the invasive fall armyworm in eastern China using a trajectory analytical approach

animal behavior and cognition more details view paper
  • Downloaded 1,634 times
  • Download rankings, all-time:
    • Site-wide: 13,421
    • In animal behavior and cognition: 92
  • Year to date:
    • Site-wide: 59,846
  • Since beginning of last month:
    • Site-wide: 125,116

Allele-Specific Quantification of Structural Variations in Cancer Genomes

bioinformatics more details view paper
  • Downloaded 1,630 times
  • Download rankings, all-time:
    • Site-wide: 13,458
    • In bioinformatics: 1,502
  • Year to date:
    • Site-wide: 148,192
  • Since beginning of last month:
    • Site-wide: 133,763

Several FDA-approved drugs effectively inhibit SARS-CoV-2 infection in vitro

microbiology more details view paper
  • Downloaded 1,520 times
  • Download rankings, all-time:
    • Site-wide: 15,043
    • In microbiology: 873
  • Year to date:
    • Site-wide: 9,259
  • Since beginning of last month:
    • Site-wide: 21,928

CRISPR/Cas9-mediated Knock-in of an Optimized TetO Repeat for Live Cell Imaging of Endogenous Loci

cell biology more details view paper
  • Downloaded 1,507 times
  • Download rankings, all-time:
    • Site-wide: 15,273
    • In cell biology: 439
  • Year to date:
    • Site-wide: 82,778
  • Since beginning of last month:
    • Site-wide: 131,941

Three-dimensional organization of chromatin associated RNAs and their role in chromatin architecture in human cells

genomics more details view paper
  • Downloaded 1,466 times
  • Download rankings, all-time:
    • Site-wide: 15,964
    • In genomics: 1,551
  • Year to date:
    • Site-wide: 3,048
  • Since beginning of last month:
    • Site-wide: 5,017

TSA-Seq reveals a largely hardwired genome organization relative to nuclear speckles with small position changes tightly correlated with gene expression changes

genomics more details view paper
  • Downloaded 1,457 times
  • Download rankings, all-time:
    • Site-wide: 16,082
    • In genomics: 1,560
  • Year to date:
    • Site-wide: 25,806
  • Since beginning of last month:
    • Site-wide: 32,209

Revealing Hi-C subcompartments by imputing high-resolution inter-chromosomal chromatin interactions

bioinformatics more details view paper
  • Downloaded 1,414 times
  • Download rankings, all-time:
    • Site-wide: 16,862
    • In bioinformatics: 1,911
  • Year to date:
    • Site-wide: 116,994
  • Since beginning of last month:
    • Site-wide: 144,052

SPIN reveals genome-wide landscape of nuclear compartmentalization

bioinformatics more details view paper
  • Downloaded 1,126 times
  • Download rankings, all-time:
    • Site-wide: 23,746
    • In bioinformatics: 2,670
  • Year to date:
    • Site-wide: 54,944
  • Since beginning of last month:
    • Site-wide: 52,783

DANGO: Predicting higher-order genetic interactions

bioinformatics more details view paper
  • Downloaded 1,101 times
  • Download rankings, all-time:
    • Site-wide: 24,621
    • In bioinformatics: 2,766
  • Year to date:
    • Site-wide: 9,396
  • Since beginning of last month:
    • Site-wide: 16,236

Predicting CTCF-mediated chromatin loops using CTCF-MP

bioinformatics more details view paper
  • Downloaded 1,035 times
  • Download rankings, all-time:
    • Site-wide: 27,017
    • In bioinformatics: 3,000
  • Year to date:
    • Site-wide: 127,399
  • Since beginning of last month:
    • Site-wide: 71,274

MOCHI enables discovery of heterogeneous interactome modules in 3D nucleome

bioinformatics more details view paper
  • Downloaded 895 times
  • Download rankings, all-time:
    • Site-wide: 33,467
    • In bioinformatics: 3,639
  • Year to date:
    • Site-wide: 150,360
  • Since beginning of last month:
    • Site-wide: 147,086

Improving personalized prediction of cancer prognoses with clonal evolution models

cancer biology more details view paper
  • Downloaded 845 times
  • Download rankings, all-time:
    • Site-wide: 36,322
    • In cancer biology: 974
  • Year to date:
    • Site-wide: 56,419
  • Since beginning of last month:
    • Site-wide: 68,024

Probing multi-way chromatin interaction with hypergraph representation learning

bioinformatics more details view paper
  • Downloaded 843 times
  • Download rankings, all-time:
    • Site-wide: 36,486
    • In bioinformatics: 3,923
  • Year to date:
    • Site-wide: 142,008
  • Since beginning of last month:
    • Site-wide: 142,365

Sterilizing immunity against SARS-CoV-2 in hamsters conferred by a novel recombinant subunit vaccine

microbiology more details view paper
  • Downloaded 776 times
  • Download rankings, all-time:
    • Site-wide: 41,113
    • In microbiology: 2,460
  • Year to date:
    • Site-wide: 14,073
  • Since beginning of last month:
    • Site-wide: 53,549

High risk of the Fall Armyworm invading into Japan and the Korean Peninsula via overseas migration

animal behavior and cognition more details view paper
  • Downloaded 730 times
  • Download rankings, all-time:
    • Site-wide: 44,911
    • In animal behavior and cognition: 402
  • Year to date:
    • Site-wide: 118,679
  • Since beginning of last month:
    • Site-wide: 133,892

Continuous-trait probabilistic model for comparing multi-species functional genomic data

bioinformatics more details view paper
  • Downloaded 614 times
  • Download rankings, all-time:
    • Site-wide: 56,805
    • In bioinformatics: 5,617
  • Year to date:
    • Site-wide: 150,715
  • Since beginning of last month:
    • Site-wide: 143,173

An overexpressed Q allele leads to increased spike density and improved processing quality

genetics more details view paper
  • Downloaded 587 times
  • Download rankings, all-time:
    • Site-wide: 60,147
    • In genetics: 2,562
  • Year to date:
    • Site-wide: 141,139
  • Since beginning of last month:
    • Site-wide: 152,156

Virus-free and live-cell visualizing SARS-CoV-2 cell entry for studies of neutralizing antibodies and compound inhibitors

microbiology more details view paper
  • Downloaded 542 times
  • Download rankings, all-time:
    • Site-wide: 66,204
    • In microbiology: 4,227
  • Year to date:
    • Site-wide: 51,138
  • Since beginning of last month:
    • Site-wide: 89,426

Genome Compartmentalization with Nuclear Landmarks: Random yet Precise

biophysics more details view paper
  • Downloaded 454 times
  • Download rankings, all-time:
    • Site-wide: 80,911
    • In biophysics: 2,948
  • Year to date:
    • Site-wide: 18,217
  • Since beginning of last month:
    • Site-wide: 1,155

The 55K SNP-Based Exploration of QTL for Spikelet Number Per Spike in a Tetraploid Wheat (Triticum turgidum L.) Population: Chinese Landrace Ailanmai X Wild Emmer

genetics more details view paper
  • Downloaded 359 times
  • Download rankings, all-time:
    • Site-wide: 101,264
    • In genetics: 4,195
  • Year to date:
    • Site-wide: 37,221
  • Since beginning of last month:
    • Site-wide: 68,441

Early-generated interneurons regulate neuronal circuit formation during early postnatal development

neuroscience more details view paper
  • Downloaded 344 times
  • Download rankings, all-time:
    • Site-wide: 104,933
    • In neuroscience: 15,705
  • Year to date:
    • Site-wide: 122,711
  • Since beginning of last month:
    • Site-wide: 57,410

Distinct progenitor behavior underlying neocortical gliogenesis related to tumorigenesis

developmental biology more details view paper
  • Downloaded 308 times
  • Download rankings, all-time:
    • Site-wide: 113,883
    • In developmental biology: 3,091
  • Year to date:
    • Site-wide: 71,564
  • Since beginning of last month:
    • Site-wide: 68,408

Adult newborn granule cells confer emotional-state-dependent plasticity in memory retrieval

neuroscience more details view paper
  • Downloaded 303 times
  • Download rankings, all-time:
    • Site-wide: 115,308
    • In neuroscience: 17,268
  • Year to date:
    • Site-wide: 78,045
  • Since beginning of last month:
    • Site-wide: 90,341

A novel QTL conferring Fusarium crown rot resistance located on chromosome arm 6HL in barley

plant biology more details view paper
  • Downloaded 218 times
  • Download rankings, all-time:
    • Site-wide: 137,475
    • In plant biology: 3,833
  • Year to date:
    • Site-wide: 162,073
  • Since beginning of last month:
    • Site-wide: 162,535

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