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Author: Michael M. Hoffman

Rankings

  • All-time downloads: 72,818 (rank: 477 out of 363,233)
  • Categories:
    • bioinformatics: 65,269 (rank: 11 out of 31,383)
    • cancer biology: 475 (rank: 10,946 (tie) out of 24,736)
    • genomics: 7,074 (rank: 2,190 out of 39,210)

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Preprints

Opportunities And Obstacles For Deep Learning In Biology And Medicine

bioinformatics more details view paper
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    • In bioinformatics: 3 out of 8,084
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    • Site-wide: 691 out of 84,359
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    • Site-wide: 768 out of 84,359

Virtual ChIP-seq: Predicting transcription factor binding by learning from the transcriptome

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    • In bioinformatics: 115 out of 8,084
  • Year to date:
    • Site-wide: 5,366 out of 84,359
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    • Site-wide: 6,639 out of 84,359

A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types

genomics more details view paper
  • Downloaded 2,369 times
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    • In genomics: 501 out of 5,444
  • Year to date:
    • Site-wide: 19,012 out of 84,359
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    • Site-wide: 16,709 out of 84,359

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

genomics more details view paper
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    • In genomics: 564 out of 5,444
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    • Site-wide: 3,709 out of 84,359

Semi-automated genome annotation using epigenomic data and Segway

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    • Site-wide: 3,609 out of 84,359
    • In bioinformatics: 670 out of 8,084
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    • Site-wide: 23,088 out of 84,359
  • Since beginning of last month:
    • Site-wide: 18,093 out of 84,359

Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet

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    • Site-wide: 3,861 out of 84,359
    • In bioinformatics: 719 out of 8,084
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    • Site-wide: 23,682 out of 84,359

DNAmod: the DNA modification database

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    • Site-wide: 6,135 out of 84,359
    • In bioinformatics: 1,098 out of 8,084
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  • Since beginning of last month:
    • Site-wide: 41,104 out of 84,359

Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell type-specific expression

genomics more details view paper
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    • In genomics: 1,084 out of 5,444
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    • Site-wide: 72,964 out of 84,359
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    • Site-wide: 77,416 out of 84,359

Umap and Bismap: quantifying genome and methylome mappability

genomics more details view paper
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    • Site-wide: 7,899 out of 84,359
    • In genomics: 1,212 out of 5,444
  • Year to date:
    • Site-wide: 31,727 out of 84,359
  • Since beginning of last month:
    • Site-wide: 34,221 out of 84,359

BEHST: genomic set enrichment analysis enhanced through integration of chromatin long-range interactions

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    • Site-wide: 9,315 out of 84,359
    • In bioinformatics: 1,565 out of 8,084
  • Year to date:
    • Site-wide: 23,518 out of 84,359
  • Since beginning of last month:
    • Site-wide: 19,765 out of 84,359

Segway 2.0: Gaussian mixture models and minibatch training

bioinformatics more details view paper
  • Downloaded 506 times
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    • Site-wide: 28,880 out of 84,359
    • In bioinformatics: 3,826 out of 8,084
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    • Site-wide: 67,605 out of 84,359
  • Since beginning of last month:
    • Site-wide: 66,247 out of 84,359

Viral integration transforms chromatin to drive oncogenesis

cancer biology more details view paper
  • Downloaded 475 times
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    • Site-wide: 31,258 out of 84,359
    • In cancer biology: 1,003 out of 2,952
  • Year to date:
    • Site-wide: 2,980 out of 84,359
  • Since beginning of last month:
    • Site-wide: 12,237 out of 84,359

Motif elucidation in ChIP-seq datasets with a knockout control

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  • Downloaded 418 times
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    • Site-wide: 36,234 out of 84,359
    • In bioinformatics: 4,494 out of 8,084
  • Year to date:
    • Site-wide: 21,791 out of 84,359
  • Since beginning of last month:
    • Site-wide: 19,206 out of 84,359

Semi-supervised segmentation and genome annotation

bioinformatics more details view paper
  • Downloaded 232 times
  • Download rankings, all-time:
    • Site-wide: 60,082 out of 84,359
    • In bioinformatics: 6,391 out of 8,084
  • Year to date:
    • Site-wide: 9,192 out of 84,359
  • Since beginning of last month:
    • Site-wide: 21,998 out of 84,359

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