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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 73,960 bioRxiv papers from 321,862 authors.

Author: Michael M. Hoffman

Rankings

  • All-time downloads: 70,360 (rank: 219 out of 321,892)
  • Categories:
    • bioinformatics: 63,502 (rank: 6 out of 27,885)
    • cancer biology: 308 (rank: 12,767 (tie) out of 21,268)
    • genomics: 6,550 (rank: 2,095 out of 35,881)

Downloads per author, site-wide

Preprints

Opportunities And Obstacles For Deep Learning In Biology And Medicine

bioinformatics more details view paper
  • Downloaded 51,723 times
  • Download rankings, all-time:
    • Site-wide: 9 out of 73,973
    • In bioinformatics: 1 out of 7,187
  • Year to date:
    • Site-wide: 1,343 out of 73,973
  • Since beginning of last month:
    • Site-wide: 1,343 out of 73,973

Virtual ChIP-seq: Predicting transcription factor binding by learning from the transcriptome

bioinformatics more details view paper
  • Downloaded 4,864 times
  • Download rankings, all-time:
    • Site-wide: 533 out of 73,973
    • In bioinformatics: 105 out of 7,187
  • Year to date:
    • Site-wide: 4,855 out of 73,973
  • Since beginning of last month:
    • Site-wide: 4,855 out of 73,973

A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types

genomics more details view paper
  • Downloaded 2,259 times
  • Download rankings, all-time:
    • Site-wide: 2,216 out of 73,973
    • In genomics: 467 out of 4,893
  • Year to date:
    • Site-wide: 25,086 out of 73,973
  • Since beginning of last month:
    • Site-wide: 25,086 out of 73,973

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

genomics more details view paper
  • Downloaded 1,857 times
  • Download rankings, all-time:
    • Site-wide: 3,100 out of 73,973
    • In genomics: 605 out of 4,893
  • Year to date:
    • Site-wide: 3,552 out of 73,973
  • Since beginning of last month:
    • Site-wide: 3,552 out of 73,973

Semi-automated genome annotation using epigenomic data and Segway

bioinformatics more details view paper
  • Downloaded 1,843 times
  • Download rankings, all-time:
    • Site-wide: 3,148 out of 73,973
    • In bioinformatics: 620 out of 7,187
  • Year to date:
    • Site-wide: 21,246 out of 73,973
  • Since beginning of last month:
    • Site-wide: 21,246 out of 73,973

Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet

bioinformatics more details view paper
  • Downloaded 1,773 times
  • Download rankings, all-time:
    • Site-wide: 3,359 out of 73,973
    • In bioinformatics: 657 out of 7,187
  • Year to date:
    • Site-wide: 15,162 out of 73,973
  • Since beginning of last month:
    • Site-wide: 15,162 out of 73,973

DNAmod: the DNA modification database

bioinformatics more details view paper
  • Downloaded 1,355 times
  • Download rankings, all-time:
    • Site-wide: 5,285 out of 73,973
    • In bioinformatics: 1,002 out of 7,187
  • Year to date:
    • Site-wide: 47,157 out of 73,973
  • Since beginning of last month:
    • Site-wide: 47,157 out of 73,973

Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell type-specific expression

genomics more details view paper
  • Downloaded 1,289 times
  • Download rankings, all-time:
    • Site-wide: 5,749 out of 73,973
    • In genomics: 967 out of 4,893
  • Year to date:
    • Site-wide: 53,266 out of 73,973
  • Since beginning of last month:
    • Site-wide: 53,266 out of 73,973

Umap and Bismap: quantifying genome and methylome mappability

genomics more details view paper
  • Downloaded 1,145 times
  • Download rankings, all-time:
    • Site-wide: 7,027 out of 73,973
    • In genomics: 1,126 out of 4,893
  • Year to date:
    • Site-wide: 22,895 out of 73,973
  • Since beginning of last month:
    • Site-wide: 22,895 out of 73,973

BEHST: genomic set enrichment analysis enhanced through integration of chromatin long-range interactions

bioinformatics more details view paper
  • Downloaded 1,006 times
  • Download rankings, all-time:
    • Site-wide: 8,681 out of 73,973
    • In bioinformatics: 1,506 out of 7,187
  • Year to date:
    • Site-wide: 21,087 out of 73,973
  • Since beginning of last month:
    • Site-wide: 21,087 out of 73,973

Segway 2.0: Gaussian mixture models and minibatch training

bioinformatics more details view paper
  • Downloaded 482 times
  • Download rankings, all-time:
    • Site-wide: 25,318 out of 73,973
    • In bioinformatics: 3,499 out of 7,187
  • Year to date:
    • Site-wide: 44,685 out of 73,973
  • Since beginning of last month:
    • Site-wide: 44,685 out of 73,973

Motif elucidation in ChIP-seq datasets with a knockout control

bioinformatics more details view paper
  • Downloaded 334 times
  • Download rankings, all-time:
    • Site-wide: 37,748 out of 73,973
    • In bioinformatics: 4,613 out of 7,187
  • Year to date:
    • Site-wide: 17,471 out of 73,973
  • Since beginning of last month:
    • Site-wide: 17,471 out of 73,973

Viral integration transforms chromatin to drive oncogenesis

cancer biology more details view paper
  • Downloaded 308 times
  • Download rankings, all-time:
    • Site-wide: 40,488 out of 73,973
    • In cancer biology: 1,282 out of 2,532
  • Year to date:
    • Site-wide: 978 out of 73,973
  • Since beginning of last month:
    • Site-wide: 978 out of 73,973

Semi-supervised segmentation and genome annotation

bioinformatics more details view paper
  • Downloaded 122 times
  • Download rankings, all-time:
    • Site-wide: 67,056 out of 73,973
    • In bioinformatics: 6,747 out of 7,187
  • Year to date:
    • Site-wide: 4,542 out of 73,973
  • Since beginning of last month:
    • Site-wide: 4,542 out of 73,973

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