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Author: Michael M. Hoffman

Rankings

  • All-time downloads: 83,578 (rank: 2,071 )
  • Categories:
    • bioinformatics: 71,747 (rank: 16 )
    • cancer biology: 1,262 (rank: 7,650 (tie) )
    • genomics: 10,569 (rank: 2,022 )

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Preprints

Opportunities And Obstacles For Deep Learning In Biology And Medicine

bioinformatics more details view paper
  • Downloaded 55,914 times
  • Download rankings, all-time:
    • Site-wide: 133
    • In bioinformatics: 3
  • Year to date:
    • Site-wide: 2,411
  • Since beginning of last month:
    • Site-wide: 3,794

Virtual ChIP-seq: Predicting transcription factor binding by learning from the transcriptome

bioinformatics more details view paper
  • Downloaded 6,148 times
  • Download rankings, all-time:
    • Site-wide: 1,938
    • In bioinformatics: 128
  • Year to date:
    • Site-wide: 10,490
  • Since beginning of last month:
    • Site-wide: 31,696

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

genomics more details view paper
  • Downloaded 2,813 times
  • Download rankings, all-time:
    • Site-wide: 5,736
    • In genomics: 584
  • Year to date:
    • Site-wide: 65,190
  • Since beginning of last month:
    • Site-wide: 59,198

A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types

genomics more details view paper
  • Downloaded 2,562 times
  • Download rankings, all-time:
    • Site-wide: 6,572
    • In genomics: 678
  • Year to date:
    • Site-wide: 100,920
  • Since beginning of last month:
    • Site-wide: 111,547

Semi-automated genome annotation using epigenomic data and Segway

bioinformatics more details view paper
  • Downloaded 2,206 times
  • Download rankings, all-time:
    • Site-wide: 8,189
    • In bioinformatics: 915
  • Year to date:
    • Site-wide: 50,752
  • Since beginning of last month:
    • Site-wide: 69,458

Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet

bioinformatics more details view paper
  • Downloaded 2,160 times
  • Download rankings, all-time:
    • Site-wide: 8,438
    • In bioinformatics: 940
  • Year to date:
    • Site-wide: 45,705
  • Since beginning of last month:
    • Site-wide: 80,534

DNAmod: the DNA modification database

bioinformatics more details view paper
  • Downloaded 1,647 times
  • Download rankings, all-time:
    • Site-wide: 12,556
    • In bioinformatics: 1,417
  • Year to date:
    • Site-wide: 68,813
  • Since beginning of last month:
    • Site-wide: 64,139

Umap and Bismap: quantifying genome and methylome mappability

genomics more details view paper
  • Downloaded 1,508 times
  • Download rankings, all-time:
    • Site-wide: 14,320
    • In genomics: 1,427
  • Year to date:
    • Site-wide: 57,434
  • Since beginning of last month:
    • Site-wide: 59,369

Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell type-specific expression

genomics more details view paper
  • Downloaded 1,478 times
  • Download rankings, all-time:
    • Site-wide: 14,793
    • In genomics: 1,470
  • Year to date:
    • Site-wide: 105,055
  • Since beginning of last month:
    • Site-wide: 138,698

BEHST: genomic set enrichment analysis enhanced through integration of chromatin long-range interactions

bioinformatics more details view paper
  • Downloaded 1,442 times
  • Download rankings, all-time:
    • Site-wide: 15,360
    • In bioinformatics: 1,745
  • Year to date:
    • Site-wide: 70,975
  • Since beginning of last month:
    • Site-wide: 110,862

Viral integration transforms chromatin to drive oncogenesis

cancer biology more details view paper
  • Downloaded 1,262 times
  • Download rankings, all-time:
    • Site-wide: 18,755
    • In cancer biology: 425
  • Year to date:
    • Site-wide: 15,312
  • Since beginning of last month:
    • Site-wide: 15,824

Functional annotation of human long noncoding RNAs using chromatin conformation data

genomics more details view paper
  • Downloaded 1,206 times
  • Download rankings, all-time:
    • Site-wide: 20,065
    • In genomics: 1,912
  • Year to date:
    • Site-wide: 3,346
  • Since beginning of last month:
    • Site-wide: 31,494

Sensitive and reproducible cell-free methylome quantification with synthetic spike-in controls

genomics more details view paper
  • Downloaded 1,002 times
  • Download rankings, all-time:
    • Site-wide: 26,441
    • In genomics: 2,405
  • Year to date:
    • Site-wide: 4,364
  • Since beginning of last month:
    • Site-wide: 13,389

Motif elucidation in ChIP-seq datasets with a knockout control

bioinformatics more details view paper
  • Downloaded 832 times
  • Download rankings, all-time:
    • Site-wide: 34,414
    • In bioinformatics: 3,738
  • Year to date:
    • Site-wide: 26,523
  • Since beginning of last month:
    • Site-wide: 38,501

Segway 2.0: Gaussian mixture models and minibatch training

bioinformatics more details view paper
  • Downloaded 598 times
  • Download rankings, all-time:
    • Site-wide: 53,877
    • In bioinformatics: 5,421
  • Year to date:
    • Site-wide: 133,605
  • Since beginning of last month:
    • Site-wide: 148,027

Semi-supervised segmentation and genome annotation

bioinformatics more details view paper
  • Downloaded 518 times
  • Download rankings, all-time:
    • Site-wide: 64,044
    • In bioinformatics: 6,202
  • Year to date:
    • Site-wide: 53,403
  • Since beginning of last month:
    • Site-wide: 52,393

Unsupervised analysis of multi-experiment transcriptomic patterns with SegRNA identifies unannotated transcripts

bioinformatics more details view paper
  • Downloaded 282 times
  • Download rankings, all-time:
    • Site-wide: 111,330
    • In bioinformatics: 9,267
  • Year to date:
    • Site-wide: 60,296
  • Since beginning of last month:
    • Site-wide: 85,149

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