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Author: Michael M. Hoffman

Rankings

  • All-time downloads: 91,708 (rank: 2,468 )
  • Categories:
    • bioinformatics: 75,761 (rank: 17 )
    • cancer biology: 1,714 (rank: 7,126 (tie) )
    • genomics: 12,114 (rank: 2,029 )
    • health policy: 113 (rank: 2,399 (tie) )

Downloads per author, site-wide

Preprints

Opportunities And Obstacles For Deep Learning In Biology And Medicine

bioinformatics more details view paper
  • Downloaded 57,994 times
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    • Site-wide: 163
    • In bioinformatics: 3
  • Year to date:
    • Site-wide: 1,435
  • Since beginning of last month:
    • Site-wide: 1,141

Virtual ChIP-seq: Predicting transcription factor binding by learning from the transcriptome

bioinformatics more details view paper
  • Downloaded 6,662 times
  • Download rankings, all-time:
    • Site-wide: 2,318
    • In bioinformatics: 131
  • Year to date:
    • Site-wide: 17,766
  • Since beginning of last month:
    • Site-wide: 36,326

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

genomics more details view paper
  • Downloaded 3,040 times
  • Download rankings, all-time:
    • Site-wide: 6,980
    • In genomics: 666
  • Year to date:
    • Site-wide: 44,347
  • Since beginning of last month:
    • Site-wide: 6,225

A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types

genomics more details view paper
  • Downloaded 2,680 times
  • Download rankings, all-time:
    • Site-wide: 8,380
    • In genomics: 780
  • Year to date:
    • Site-wide: 104,001
  • Since beginning of last month:
    • Site-wide: 119,158

Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet

bioinformatics more details view paper
  • Downloaded 2,531 times
  • Download rankings, all-time:
    • Site-wide: 9,106
    • In bioinformatics: 1,073
  • Year to date:
    • Site-wide: 23,143
  • Since beginning of last month:
    • Site-wide: 5,658

Semi-automated genome annotation using epigenomic data and Segway

bioinformatics more details view paper
  • Downloaded 2,405 times
  • Download rankings, all-time:
    • Site-wide: 9,842
    • In bioinformatics: 1,009
  • Year to date:
    • Site-wide: 71,855
  • Since beginning of last month:
    • Site-wide: 55,698

Systematic identification of cis-interacting lncRNAs and their targets

genomics more details view paper
  • Downloaded 1,963 times
  • Download rankings, all-time:
    • Site-wide: 13,420
    • In genomics: 1,411
  • Year to date:
    • Site-wide: 8,274
  • Since beginning of last month:
    • Site-wide: 33,972

Human papillomavirus integration transforms chromatin to drive oncogenesis

cancer biology more details view paper
  • Downloaded 1,787 times
  • Download rankings, all-time:
    • Site-wide: 15,476
    • In cancer biology: 322
  • Year to date:
    • Site-wide: 13,334
  • Since beginning of last month:
    • Site-wide: 19,090

DNAmod: the DNA modification database

bioinformatics more details view paper
  • Downloaded 1,754 times
  • Download rankings, all-time:
    • Site-wide: 15,909
    • In bioinformatics: 1,664
  • Year to date:
    • Site-wide: 117,635
  • Since beginning of last month:
    • Site-wide: 110,018

Sensitive and reproducible cell-free methylome quantification with synthetic spike-in controls

genomics more details view paper
  • Downloaded 1,694 times
  • Download rankings, all-time:
    • Site-wide: 16,753
    • In genomics: 1,547
  • Year to date:
    • Site-wide: 10,542
  • Since beginning of last month:
    • Site-wide: 44,500

Umap and Bismap: quantifying genome and methylome mappability

genomics more details view paper
  • Downloaded 1,665 times
  • Download rankings, all-time:
    • Site-wide: 17,230
    • In genomics: 1,565
  • Year to date:
    • Site-wide: 72,523
  • Since beginning of last month:
    • Site-wide: 45,812

Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell type-specific expression

genomics more details view paper
  • Downloaded 1,595 times
  • Download rankings, all-time:
    • Site-wide: 18,444
    • In genomics: 1,623
  • Year to date:
    • Site-wide: 110,483
  • Since beginning of last month:
    • Site-wide: 108,374

BEHST: genomic set enrichment analysis enhanced through integration of chromatin long-range interactions

bioinformatics more details view paper
  • Downloaded 1,570 times
  • Download rankings, all-time:
    • Site-wide: 18,894
    • In bioinformatics: 2,005
  • Year to date:
    • Site-wide: 107,053
  • Since beginning of last month:
    • Site-wide: 68,384

Motif elucidation in ChIP-seq datasets with a knockout control

bioinformatics more details view paper
  • Downloaded 1,157 times
  • Download rankings, all-time:
    • Site-wide: 30,650
    • In bioinformatics: 3,296
  • Year to date:
    • Site-wide: 26,494
  • Since beginning of last month:
    • Site-wide: 46,515

Assessing and assuring interoperability of a genomics file format

bioinformatics more details view paper
  • Downloaded 818 times
  • Download rankings, all-time:
    • Site-wide: 52,170
    • In bioinformatics: 5,314
  • Year to date:
    • Site-wide: 4,742
  • Since beginning of last month:
    • Site-wide: 53,516

Semi-supervised segmentation and genome annotation

bioinformatics more details view paper
  • Downloaded 677 times
  • Download rankings, all-time:
    • Site-wide: 68,582
    • In bioinformatics: 6,279
  • Year to date:
    • Site-wide: 90,399
  • Since beginning of last month:
    • Site-wide: None

Segway 2.0: Gaussian mixture models and minibatch training

bioinformatics more details view paper
  • Downloaded 656 times
  • Download rankings, all-time:
    • Site-wide: 71,717
    • In bioinformatics: 6,528
  • Year to date:
    • Site-wide: 182,144
  • Since beginning of last month:
    • Site-wide: 124,700

Unsupervised analysis of multi-experiment transcriptomic patterns with SegRNA identifies unannotated transcripts

bioinformatics more details view paper
  • Downloaded 549 times
  • Download rankings, all-time:
    • Site-wide: 89,747
    • In bioinformatics: 8,014
  • Year to date:
    • Site-wide: 59,148
  • Since beginning of last month:
    • Site-wide: 54,380

Automated identification of cell-type-specific genes and alternative promoters

bioinformatics more details view paper
  • Downloaded 308 times
  • Download rankings, all-time:
    • Site-wide: 151,978
    • In bioinformatics: 11,879
  • Year to date:
    • Site-wide: 57,792
  • Since beginning of last month:
    • Site-wide: 96,310

Establishing a core set of open science practices in biomedicine: a modified Delphi study

health policy more details view paper
  • Downloaded 203 times
  • Download rankings, all-time:
    • Site-wide: 181,315
    • In health policy: 478
  • Year to date:
    • Site-wide: 44,245
  • Since beginning of last month:
    • Site-wide: 28,174

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