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Author: Rob Knight

  • ORCiD: http://orcid.org/0000-0002-0975-9019
  • Most recently observed institution: Center for Microbiome Innovation and Departments of Pediatrics, Bioengineering, and Computer Science & Engineering, University of California San Diego, La Jolla, CA

Rankings

  • All-time downloads: 38,935 (rank: 654 out of 334,426)
  • Categories:
    • bioinformatics: 14,159 (rank: 198 out of 28,790)
    • ecology: 2,066 (rank: 604 (tie) out of 14,035)
    • genomics: 4,859 (rank: 3,112 out of 36,847)
    • immunology: 305 (rank: 9,403 (tie) out of 16,639)
    • microbiology: 10,940 (rank: 218 out of 35,516)
    • molecular biology: 6,363 (rank: 132 (tie) out of 16,651)
    • systems biology: 243 (rank: 8,190 (tie) out of 10,105)

Downloads per author, site-wide

Preprints

Enabling high-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing

molecular biology more details view paper
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    • Site-wide: 87 out of 77,122
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MASST: A Web-based Basic Mass Spectrometry Search Tool for Molecules to Search Public Data.

bioinformatics more details view paper
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Evaluating the information content of shallow shotgun metagenomics

genomics more details view paper
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American Gut: an Open Platform for Citizen-Science Microbiome Research

microbiology more details view paper
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    • In microbiology: 59 out of 6,386
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BugBase Predicts Organism Level Microbiome Phenotypes

bioinformatics more details view paper
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    • In bioinformatics: 308 out of 7,446
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Structure-Based Function Prediction using Graph Convolutional Networks

bioinformatics more details view paper
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    • In bioinformatics: 510 out of 7,446
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Quantifying and understanding well-to-well contamination in microbiome research

genomics more details view paper
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    • In genomics: 866 out of 5,066
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Chemical Impacts of the Microbiome Across Scales Reveal Novel Conjugated Bile Acids

microbiology more details view paper
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Links between environment, diet, and the hunter-gatherer microbiome

microbiology more details view paper
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    • In microbiology: 305 out of 6,386
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Dramatic differences in gut bacterial densities help to explain the relationship between diet and habitat in rainforest ants

ecology more details view paper
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    • In ecology: 175 out of 3,369
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    • Site-wide: 61,635 out of 77,122
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    • Site-wide: 63,418 out of 77,122

Metagenomic covariation along densely sampled environmental gradients in the Red Sea

microbiology more details view paper
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    • In microbiology: 409 out of 6,386
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The development of gut microbiota in ostriches and its association with juvenile growth

microbiology more details view paper
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    • In microbiology: 454 out of 6,386
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Age and sex-dependent patterns of gut microbial diversity in human adults

microbiology more details view paper
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    • In microbiology: 577 out of 6,386
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    • Site-wide: 26,699 out of 77,122

Species abundance information improves sequence taxonomy classification accuracy

bioinformatics more details view paper
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    • In bioinformatics: 1,976 out of 7,446
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    • Site-wide: 17,457 out of 77,122

Bacterial community composition and dynamics spanning five years in freshwater bog lakes

microbiology more details view paper
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    • In microbiology: 611 out of 6,386
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    • Site-wide: 62,652 out of 77,122

Microbial biogeography and ecology of the mouth and implications for periodontal diseases

ecology more details view paper
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    • In ecology: 390 out of 3,369
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MetaRiPPquest: A Peptidogenomics Approach for the Discovery of Ribosomally Synthesized and Post-translationally Modified Peptides

bioinformatics more details view paper
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Algorithmic Learning for Auto-deconvolution of GC-MS Data to Enable Molecular Networking within GNPS.

bioinformatics more details view paper
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    • In bioinformatics: 2,590 out of 7,446
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Repository-scale Co- and Re-analysis of Tandem Mass Spectrometry Data

bioinformatics more details view paper
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    • In bioinformatics: 3,267 out of 7,446
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Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules

microbiology more details view paper
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    • In microbiology: 1,324 out of 6,386
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Revisiting microbe-metabolite interactions: doing better than random

bioinformatics more details view paper
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    • In bioinformatics: 4,285 out of 7,446
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Visualizing 'omic feature rankings and log-ratios using Qurro

bioinformatics more details view paper
  • Downloaded 333 times
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    • In bioinformatics: 4,825 out of 7,446
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The Molecular and Microbial Microenvironments in Chronically Diseased Lungs

microbiology more details view paper
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    • In microbiology: 2,712 out of 6,386
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Multiple sclerosis-associated changes in the composition and immune functions of spore-forming bacteria

immunology more details view paper
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    • In immunology: 991 out of 2,071
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Microbial ecology of Atlantic salmon, Salmo salar, hatcheries: impacts of the built environment on fish mucosal microbiota

microbiology more details view paper
  • Downloaded 268 times
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    • In microbiology: 3,367 out of 6,386
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Temporal, environmental, and biological drivers of the mucosal microbiome in a wild marine fish, Scomber japonicus

ecology more details view paper
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    • In ecology: 1,775 out of 3,369
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    • Site-wide: 16,112 out of 77,122

Metabolome-informed microbiome analysis refines metadata classifications and reveals unexpected medication transfer in captive cheetahs

systems biology more details view paper
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    • In systems biology: 1,552 out of 2,079
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  • Since beginning of last month:
    • Site-wide: 22,190 out of 77,122

Red Sea SAR11 and Prochlorococcus Single-cell Genomes Reflect Globally Distributed Pangenomes

microbiology more details view paper
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    • Site-wide: 51,739 out of 77,122
    • In microbiology: 3,691 out of 6,386
  • Year to date:
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  • Since beginning of last month:
    • Site-wide: 63,724 out of 77,122

Microbe-metabolite associations linked to the rebounding murine gut microbiome post-colonization with vancomycin resistant Enterococcus faecium

microbiology more details view paper
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    • Site-wide: 57,646 out of 77,122
    • In microbiology: 4,268 out of 6,386
  • Year to date:
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