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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 48,092 bioRxiv papers from 215,637 authors.

Author: Rob Knight

Rankings

  • All-time downloads: 13,968 (rank: 1,580 out of 215,637)
  • Categories:
    • bioinformatics: 2,980 (rank: 1,605 (tie) out of 19,497)
    • ecology: 1,129 (rank: 737 (tie) out of 8,003)
    • genomics: 3,377 (rank: 3,233 out of 25,614)
    • immunology: 223 (rank: 4,458 (tie) out of 8,212)
    • microbiology: 6,259 (rank: 29 (tie) out of 20,534)

Downloads per author, site-wide

Preprints

MASST: A Web-based Basic Mass Spectrometry Search Tool for Molecules to Search Public Data.

bioinformatics more details view paper

No bioRxiv download data for this paper yet.

Evaluating the information content of shallow shotgun metagenomics

genomics more details view paper
  • Downloaded 3,000 times
  • Download rankings, all-time:
    • Site-wide: 773 out of 48,092
    • In genomics: 204 out of 3,527
  • Year to date:
    • Site-wide: 1,727 out of 48,092
  • Since beginning of last month:
    • Site-wide: 1,943 out of 48,092

American Gut: an Open Platform for Citizen-Science Microbiome Research

microbiology more details view paper
  • Downloaded 2,701 times
  • Download rankings, all-time:
    • Site-wide: 946 out of 48,092
    • In microbiology: 19 out of 3,717
  • Year to date:
    • Site-wide: 5,054 out of 48,092
  • Since beginning of last month:
    • Site-wide: 4,532 out of 48,092

BugBase Predicts Organism Level Microbiome Phenotypes

bioinformatics more details view paper
  • Downloaded 2,050 times
  • Download rankings, all-time:
    • Site-wide: 1,545 out of 48,092
    • In bioinformatics: 317 out of 5,100
  • Year to date:
    • Site-wide: 2,994 out of 48,092
  • Since beginning of last month:
    • Site-wide: 2,779 out of 48,092

Dramatic differences in gut bacterial densities help to explain the relationship between diet and habitat in rainforest ants

ecology more details view paper
  • Downloaded 919 times
  • Download rankings, all-time:
    • Site-wide: 5,692 out of 48,092
    • In ecology: 127 out of 2,002
  • Year to date:
    • Site-wide: 20,769 out of 48,092
  • Since beginning of last month:
    • Site-wide: 25,861 out of 48,092

Metagenomic covariation along densely sampled environmental gradients in the Red Sea

microbiology more details view paper
  • Downloaded 904 times
  • Download rankings, all-time:
    • Site-wide: 5,848 out of 48,092
    • In microbiology: 223 out of 3,717
  • Year to date:
    • Site-wide: 20,291 out of 48,092
  • Since beginning of last month:
    • Site-wide: 13,818 out of 48,092

Links between environment, diet, and the hunter-gatherer microbiome

microbiology more details view paper
  • Downloaded 745 times
  • Download rankings, all-time:
    • Site-wide: 7,865 out of 48,092
    • In microbiology: 330 out of 3,717
  • Year to date:
    • Site-wide: 5,911 out of 48,092
  • Since beginning of last month:
    • Site-wide: 4,458 out of 48,092

Bacterial community composition and dynamics spanning five years in freshwater bog lakes

microbiology more details view paper
  • Downloaded 726 times
  • Download rankings, all-time:
    • Site-wide: 8,121 out of 48,092
    • In microbiology: 343 out of 3,717
  • Year to date:
    • Site-wide: 27,221 out of 48,092
  • Since beginning of last month:
    • Site-wide: 27,222 out of 48,092

The development of gut microbiota in ostriches and its association with juvenile growth

microbiology more details view paper
  • Downloaded 553 times
  • Download rankings, all-time:
    • Site-wide: 11,769 out of 48,092
    • In microbiology: 553 out of 3,717
  • Year to date:
    • Site-wide: 9,353 out of 48,092
  • Since beginning of last month:
    • Site-wide: 9,491 out of 48,092

MetaRiPPquest: A Peptidogenomics Approach for the Discovery of Ribosomally Synthesized and Post-translationally Modified Peptides

bioinformatics more details view paper
  • Downloaded 496 times
  • Download rankings, all-time:
    • Site-wide: 13,554 out of 48,092
    • In bioinformatics: 2,199 out of 5,100
  • Year to date:
    • Site-wide: 14,137 out of 48,092
  • Since beginning of last month:
    • Site-wide: 13,032 out of 48,092

Age and sex-dependent patterns of gut microbial diversity in human adults

microbiology more details view paper
  • Downloaded 485 times
  • Download rankings, all-time:
    • Site-wide: 13,936 out of 48,092
    • In microbiology: 687 out of 3,717
  • Year to date:
    • Site-wide: 942 out of 48,092
  • Since beginning of last month:
    • Site-wide: 2,303 out of 48,092

Species abundance information improves sequence taxonomy classification accuracy

bioinformatics more details view paper
  • Downloaded 434 times
  • Download rankings, all-time:
    • Site-wide: 15,826 out of 48,092
    • In bioinformatics: 2,455 out of 5,100
  • Year to date:
    • Site-wide: 2,945 out of 48,092
  • Since beginning of last month:
    • Site-wide: 2,701 out of 48,092

Quantifying and understanding well-to-well contamination in microbiome research

genomics more details view paper
  • Downloaded 377 times
  • Download rankings, all-time:
    • Site-wide: 18,360 out of 48,092
    • In genomics: 2,148 out of 3,527
  • Year to date:
    • Site-wide: 1,492 out of 48,092
  • Since beginning of last month:
    • Site-wide: 268 out of 48,092

Multiple sclerosis-associated changes in the composition and immune functions of spore-forming bacteria

immunology more details view paper
  • Downloaded 223 times
  • Download rankings, all-time:
    • Site-wide: 28,430 out of 48,092
    • In immunology: 487 out of 1,078
  • Year to date:
    • Site-wide: 38,757 out of 48,092
  • Since beginning of last month:
    • Site-wide: 36,081 out of 48,092

Microbial biogeography and ecology of the mouth and implications for periodontal diseases

ecology more details view paper
  • Downloaded 210 times
  • Download rankings, all-time:
    • Site-wide: 29,602 out of 48,092
    • In ecology: 1,045 out of 2,002
  • Year to date:
    • Site-wide: 3,833 out of 48,092
  • Since beginning of last month:
    • Site-wide: 4,776 out of 48,092

Red Sea SAR11 and Prochlorococcus Single-cell Genomes Reflect Globally Distributed Pangenomes

microbiology more details view paper
  • Downloaded 145 times
  • Download rankings, all-time:
    • Site-wide: 35,937 out of 48,092
    • In microbiology: 2,416 out of 3,717
  • Year to date:
    • Site-wide: 6,681 out of 48,092
  • Since beginning of last month:
    • Site-wide: 13,574 out of 48,092

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