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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 52,871 bioRxiv papers from 244,990 authors.

Author: Rob Knight

Rankings

  • All-time downloads: 21,111 (rank: 900 out of 244,990)
  • Categories:
    • bioinformatics: 8,259 (rank: 348 out of 21,645)
    • ecology: 1,262 (rank: 697 out of 8,964)
    • genomics: 3,983 (rank: 2,852 out of 28,263)
    • immunology: 239 (rank: 5,456 (tie) out of 9,813)
    • microbiology: 7,368 (rank: 22 out of 23,738)

Downloads per author, site-wide

Preprints

The Molecular and Microbial Microenvironments in Chronically Diseased Lungs

microbiology more details view paper

No bioRxiv download data for this paper yet.

MASST: A Web-based Basic Mass Spectrometry Search Tool for Molecules to Search Public Data.

bioinformatics more details view paper
  • Downloaded 4,980 times
  • Download rankings, all-time:
    • Site-wide: 339 out of 52,871
    • In bioinformatics: 67 out of 5,523
  • Year to date:
    • Site-wide: 33 out of 52,871
  • Since beginning of last month:
    • Site-wide: 130 out of 52,871

Evaluating the information content of shallow shotgun metagenomics

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  • Downloaded 3,131 times
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    • Site-wide: 829 out of 52,871
    • In genomics: 218 out of 3,774
  • Year to date:
    • Site-wide: 2,486 out of 52,871
  • Since beginning of last month:
    • Site-wide: 5,783 out of 52,871

American Gut: an Open Platform for Citizen-Science Microbiome Research

microbiology more details view paper
  • Downloaded 2,804 times
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    • Site-wide: 1,014 out of 52,871
    • In microbiology: 19 out of 4,144
  • Year to date:
    • Site-wide: 5,826 out of 52,871
  • Since beginning of last month:
    • Site-wide: 7,233 out of 52,871

BugBase Predicts Organism Level Microbiome Phenotypes

bioinformatics more details view paper
  • Downloaded 2,203 times
  • Download rankings, all-time:
    • Site-wide: 1,564 out of 52,871
    • In bioinformatics: 320 out of 5,523
  • Year to date:
    • Site-wide: 3,315 out of 52,871
  • Since beginning of last month:
    • Site-wide: 4,362 out of 52,871

Dramatic differences in gut bacterial densities help to explain the relationship between diet and habitat in rainforest ants

ecology more details view paper
  • Downloaded 955 times
  • Download rankings, all-time:
    • Site-wide: 6,192 out of 52,871
    • In ecology: 142 out of 2,192
  • Year to date:
    • Site-wide: 24,850 out of 52,871
  • Since beginning of last month:
    • Site-wide: 27,310 out of 52,871

Metagenomic covariation along densely sampled environmental gradients in the Red Sea

microbiology more details view paper
  • Downloaded 918 times
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    • Site-wide: 6,576 out of 52,871
    • In microbiology: 263 out of 4,144
  • Year to date:
    • Site-wide: 30,581 out of 52,871
  • Since beginning of last month:
    • Site-wide: 47,296 out of 52,871

Quantifying and understanding well-to-well contamination in microbiome research

genomics more details view paper
  • Downloaded 852 times
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    • Site-wide: 7,379 out of 52,871
    • In genomics: 1,167 out of 3,774
  • Year to date:
    • Site-wide: 882 out of 52,871
  • Since beginning of last month:
    • Site-wide: 960 out of 52,871

Links between environment, diet, and the hunter-gatherer microbiome

microbiology more details view paper
  • Downloaded 831 times
  • Download rankings, all-time:
    • Site-wide: 7,689 out of 52,871
    • In microbiology: 320 out of 4,144
  • Year to date:
    • Site-wide: 7,250 out of 52,871
  • Since beginning of last month:
    • Site-wide: 8,248 out of 52,871

Bacterial community composition and dynamics spanning five years in freshwater bog lakes

microbiology more details view paper
  • Downloaded 742 times
  • Download rankings, all-time:
    • Site-wide: 9,133 out of 52,871
    • In microbiology: 398 out of 4,144
  • Year to date:
    • Site-wide: 35,956 out of 52,871
  • Since beginning of last month:
    • Site-wide: 41,533 out of 52,871

Age and sex-dependent patterns of gut microbial diversity in human adults

microbiology more details view paper
  • Downloaded 664 times
  • Download rankings, all-time:
    • Site-wide: 10,636 out of 52,871
    • In microbiology: 481 out of 4,144
  • Year to date:
    • Site-wide: 1,390 out of 52,871
  • Since beginning of last month:
    • Site-wide: 3,477 out of 52,871

The development of gut microbiota in ostriches and its association with juvenile growth

microbiology more details view paper
  • Downloaded 644 times
  • Download rankings, all-time:
    • Site-wide: 11,105 out of 52,871
    • In microbiology: 518 out of 4,144
  • Year to date:
    • Site-wide: 9,427 out of 52,871
  • Since beginning of last month:
    • Site-wide: 10,383 out of 52,871

Chemical Impacts of the Microbiome Across Scales Reveal Novel Conjugated Bile Acids

microbiology more details view paper
  • Downloaded 575 times
  • Download rankings, all-time:
    • Site-wide: 12,874 out of 52,871
    • In microbiology: 613 out of 4,144
  • Year to date:
    • Site-wide: 1,780 out of 52,871
  • Since beginning of last month:
    • Site-wide: 216 out of 52,871

Species abundance information improves sequence taxonomy classification accuracy

bioinformatics more details view paper
  • Downloaded 539 times
  • Download rankings, all-time:
    • Site-wide: 14,024 out of 52,871
    • In bioinformatics: 2,268 out of 5,523
  • Year to date:
    • Site-wide: 4,015 out of 52,871
  • Since beginning of last month:
    • Site-wide: 9,234 out of 52,871

MetaRiPPquest: A Peptidogenomics Approach for the Discovery of Ribosomally Synthesized and Post-translationally Modified Peptides

bioinformatics more details view paper
  • Downloaded 537 times
  • Download rankings, all-time:
    • Site-wide: 14,088 out of 52,871
    • In bioinformatics: 2,286 out of 5,523
  • Year to date:
    • Site-wide: 18,440 out of 52,871
  • Since beginning of last month:
    • Site-wide: 22,477 out of 52,871

Microbial biogeography and ecology of the mouth and implications for periodontal diseases

ecology more details view paper
  • Downloaded 307 times
  • Download rankings, all-time:
    • Site-wide: 25,705 out of 52,871
    • In ecology: 840 out of 2,192
  • Year to date:
    • Site-wide: 5,003 out of 52,871
  • Since beginning of last month:
    • Site-wide: 7,259 out of 52,871

Multiple sclerosis-associated changes in the composition and immune functions of spore-forming bacteria

immunology more details view paper
  • Downloaded 239 times
  • Download rankings, all-time:
    • Site-wide: 31,558 out of 52,871
    • In immunology: 588 out of 1,220
  • Year to date:
    • Site-wide: 43,930 out of 52,871
  • Since beginning of last month:
    • Site-wide: 41,390 out of 52,871

Red Sea SAR11 and Prochlorococcus Single-cell Genomes Reflect Globally Distributed Pangenomes

microbiology more details view paper
  • Downloaded 190 times
  • Download rankings, all-time:
    • Site-wide: 36,466 out of 52,871
    • In microbiology: 2,414 out of 4,144
  • Year to date:
    • Site-wide: 10,440 out of 52,871
  • Since beginning of last month:
    • Site-wide: 23,307 out of 52,871

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