Author: Rob Knight

ORCiD: http://orcid.org/0000-0002-0975-9019
Most recently observed institution: Center for Microbiome Innovation and Departments of Pediatrics, Bioengineering, and Computer Science & Engineering, University of California San Diego, La Jolla, CA

Rankings

All-time downloads: 38,935 (rank: 654 out of 334,426)
Categories:
- bioinformatics: 14,159 (rank: 198 out of 28,790)
- ecology: 2,066 (rank: 604 (tie) out of 14,035)
- genomics: 4,859 (rank: 3,112 out of 36,847)
- immunology: 305 (rank: 9,403 (tie) out of 16,639)
- microbiology: 10,940 (rank: 218 out of 35,516)
- molecular biology: 6,363 (rank: 132 (tie) out of 16,651)
- systems biology: 243 (rank: 8,190 (tie) out of 10,105)

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Preprints

Enabling high-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing

molecular biology more details view paper

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MASST: A Web-based Basic Mass Spectrometry Search Tool for Molecules to Search Public Data.

bioinformatics more details view paper

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Evaluating the information content of shallow shotgun metagenomics

genomics more details view paper

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American Gut: an Open Platform for Citizen-Science Microbiome Research

microbiology more details view paper

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BugBase Predicts Organism Level Microbiome Phenotypes

bioinformatics more details view paper

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Structure-Based Function Prediction using Graph Convolutional Networks

bioinformatics more details view paper

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Quantifying and understanding well-to-well contamination in microbiome research

genomics more details view paper

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Chemical Impacts of the Microbiome Across Scales Reveal Novel Conjugated Bile Acids

microbiology more details view paper

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Links between environment, diet, and the hunter-gatherer microbiome

microbiology more details view paper

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Dramatic differences in gut bacterial densities help to explain the relationship between diet and habitat in rainforest ants

ecology more details view paper

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Metagenomic covariation along densely sampled environmental gradients in the Red Sea

microbiology more details view paper

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The development of gut microbiota in ostriches and its association with juvenile growth

microbiology more details view paper

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Age and sex-dependent patterns of gut microbial diversity in human adults

microbiology more details view paper

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Species abundance information improves sequence taxonomy classification accuracy

bioinformatics more details view paper

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Bacterial community composition and dynamics spanning five years in freshwater bog lakes

microbiology more details view paper

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Microbial biogeography and ecology of the mouth and implications for periodontal diseases

ecology more details view paper

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MetaRiPPquest: A Peptidogenomics Approach for the Discovery of Ribosomally Synthesized and Post-translationally Modified Peptides

bioinformatics more details view paper

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Algorithmic Learning for Auto-deconvolution of GC-MS Data to Enable Molecular Networking within GNPS.

bioinformatics more details view paper

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Repository-scale Co- and Re-analysis of Tandem Mass Spectrometry Data

bioinformatics more details view paper

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Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules

microbiology more details view paper

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Revisiting microbe-metabolite interactions: doing better than random

bioinformatics more details view paper

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Visualizing 'omic feature rankings and log-ratios using Qurro

bioinformatics more details view paper

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The Molecular and Microbial Microenvironments in Chronically Diseased Lungs

microbiology more details view paper

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Multiple sclerosis-associated changes in the composition and immune functions of spore-forming bacteria

immunology more details view paper

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Microbial ecology of Atlantic salmon, Salmo salar, hatcheries: impacts of the built environment on fish mucosal microbiota

microbiology more details view paper

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Temporal, environmental, and biological drivers of the mucosal microbiome in a wild marine fish, Scomber japonicus

ecology more details view paper

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Metabolome-informed microbiome analysis refines metadata classifications and reveals unexpected medication transfer in captive cheetahs

systems biology more details view paper

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Red Sea SAR11 and Prochlorococcus Single-cell Genomes Reflect Globally Distributed Pangenomes

microbiology more details view paper

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Microbe-metabolite associations linked to the rebounding murine gut microbiome post-colonization with vancomycin resistant Enterococcus faecium

microbiology more details view paper

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