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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 60,239 bioRxiv papers from 267,831 authors.

Author: Rob Knight

Rankings

  • All-time downloads: 23,690 (rank: 854 out of 267,831)
  • Categories:
    • bioinformatics: 9,123 (rank: 326 out of 23,908)
    • ecology: 1,483 (rank: 768 out of 10,576)
    • genomics: 4,386 (rank: 2,832 (tie) out of 31,259)
    • immunology: 265 (rank: 6,445 (tie) out of 11,908)
    • microbiology: 8,433 (rank: 44 out of 27,508)

Downloads per author, site-wide

Preprints

MASST: A Web-based Basic Mass Spectrometry Search Tool for Molecules to Search Public Data.

bioinformatics more details view paper
  • Downloaded 5,272 times
  • Download rankings, all-time:
    • Site-wide: 354 out of 60,239
    • In bioinformatics: 68 out of 6,078
  • Year to date:
    • Site-wide: 54 out of 60,239
  • Since beginning of last month:
    • Site-wide: 2,183 out of 60,239

Evaluating the information content of shallow shotgun metagenomics

genomics more details view paper
  • Downloaded 3,279 times
  • Download rankings, all-time:
    • Site-wide: 880 out of 60,239
    • In genomics: 229 out of 4,181
  • Year to date:
    • Site-wide: 2,993 out of 60,239
  • Since beginning of last month:
    • Site-wide: 9,180 out of 60,239

American Gut: an Open Platform for Citizen-Science Microbiome Research

microbiology more details view paper
  • Downloaded 2,927 times
  • Download rankings, all-time:
    • Site-wide: 1,091 out of 60,239
    • In microbiology: 22 out of 4,826
  • Year to date:
    • Site-wide: 6,238 out of 60,239
  • Since beginning of last month:
    • Site-wide: 8,276 out of 60,239

BugBase Predicts Organism Level Microbiome Phenotypes

bioinformatics more details view paper
  • Downloaded 2,365 times
  • Download rankings, all-time:
    • Site-wide: 1,602 out of 60,239
    • In bioinformatics: 318 out of 6,078
  • Year to date:
    • Site-wide: 3,591 out of 60,239
  • Since beginning of last month:
    • Site-wide: 6,792 out of 60,239

Quantifying and understanding well-to-well contamination in microbiome research

genomics more details view paper
  • Downloaded 1,107 times
  • Download rankings, all-time:
    • Site-wide: 5,804 out of 60,239
    • In genomics: 970 out of 4,181
  • Year to date:
    • Site-wide: 1,108 out of 60,239
  • Since beginning of last month:
    • Site-wide: 4,105 out of 60,239

Dramatic differences in gut bacterial densities help to explain the relationship between diet and habitat in rainforest ants

ecology more details view paper
  • Downloaded 1,004 times
  • Download rankings, all-time:
    • Site-wide: 6,799 out of 60,239
    • In ecology: 148 out of 2,558
  • Year to date:
    • Site-wide: 27,733 out of 60,239
  • Since beginning of last month:
    • Site-wide: 33,553 out of 60,239

Links between environment, diet, and the hunter-gatherer microbiome

microbiology more details view paper
  • Downloaded 962 times
  • Download rankings, all-time:
    • Site-wide: 7,255 out of 60,239
    • In microbiology: 297 out of 4,826
  • Year to date:
    • Site-wide: 7,009 out of 60,239
  • Since beginning of last month:
    • Site-wide: 9,471 out of 60,239

Metagenomic covariation along densely sampled environmental gradients in the Red Sea

microbiology more details view paper
  • Downloaded 957 times
  • Download rankings, all-time:
    • Site-wide: 7,317 out of 60,239
    • In microbiology: 303 out of 4,826
  • Year to date:
    • Site-wide: 35,186 out of 60,239
  • Since beginning of last month:
    • Site-wide: 41,818 out of 60,239

Chemical Impacts of the Microbiome Across Scales Reveal Novel Conjugated Bile Acids

microbiology more details view paper
  • Downloaded 850 times
  • Download rankings, all-time:
    • Site-wide: 8,833 out of 60,239
    • In microbiology: 380 out of 4,826
  • Year to date:
    • Site-wide: 1,742 out of 60,239
  • Since beginning of last month:
    • Site-wide: 4,347 out of 60,239

Bacterial community composition and dynamics spanning five years in freshwater bog lakes

microbiology more details view paper
  • Downloaded 787 times
  • Download rankings, all-time:
    • Site-wide: 9,932 out of 60,239
    • In microbiology: 441 out of 4,826
  • Year to date:
    • Site-wide: 37,777 out of 60,239
  • Since beginning of last month:
    • Site-wide: 41,139 out of 60,239

Age and sex-dependent patterns of gut microbial diversity in human adults

microbiology more details view paper
  • Downloaded 766 times
  • Download rankings, all-time:
    • Site-wide: 10,341 out of 60,239
    • In microbiology: 465 out of 4,826
  • Year to date:
    • Site-wide: 2,085 out of 60,239
  • Since beginning of last month:
    • Site-wide: 14,332 out of 60,239

The development of gut microbiota in ostriches and its association with juvenile growth

microbiology more details view paper
  • Downloaded 706 times
  • Download rankings, all-time:
    • Site-wide: 11,571 out of 60,239
    • In microbiology: 527 out of 4,826
  • Year to date:
    • Site-wide: 12,134 out of 60,239
  • Since beginning of last month:
    • Site-wide: 28,619 out of 60,239

Species abundance information improves sequence taxonomy classification accuracy

bioinformatics more details view paper
  • Downloaded 675 times
  • Download rankings, all-time:
    • Site-wide: 12,384 out of 60,239
    • In bioinformatics: 2,041 out of 6,078
  • Year to date:
    • Site-wide: 4,501 out of 60,239
  • Since beginning of last month:
    • Site-wide: 9,150 out of 60,239

MetaRiPPquest: A Peptidogenomics Approach for the Discovery of Ribosomally Synthesized and Post-translationally Modified Peptides

bioinformatics more details view paper
  • Downloaded 604 times
  • Download rankings, all-time:
    • Site-wide: 14,387 out of 60,239
    • In bioinformatics: 2,299 out of 6,078
  • Year to date:
    • Site-wide: 19,533 out of 60,239
  • Since beginning of last month:
    • Site-wide: 23,522 out of 60,239

Microbial biogeography and ecology of the mouth and implications for periodontal diseases

ecology more details view paper
  • Downloaded 412 times
  • Download rankings, all-time:
    • Site-wide: 23,116 out of 60,239
    • In ecology: 710 out of 2,558
  • Year to date:
    • Site-wide: 5,974 out of 60,239
  • Since beginning of last month:
    • Site-wide: 11,755 out of 60,239

Multiple sclerosis-associated changes in the composition and immune functions of spore-forming bacteria

immunology more details view paper
  • Downloaded 265 times
  • Download rankings, all-time:
    • Site-wide: 35,053 out of 60,239
    • In immunology: 684 out of 1,480
  • Year to date:
    • Site-wide: 50,879 out of 60,239
  • Since beginning of last month:
    • Site-wide: 36,684 out of 60,239

The Molecular and Microbial Microenvironments in Chronically Diseased Lungs

microbiology more details view paper
  • Downloaded 265 times
  • Download rankings, all-time:
    • Site-wide: 35,069 out of 60,239
    • In microbiology: 2,253 out of 4,826
  • Year to date:
    • Site-wide: 12,180 out of 60,239
  • Since beginning of last month:
    • Site-wide: 7,264 out of 60,239

Red Sea SAR11 and Prochlorococcus Single-cell Genomes Reflect Globally Distributed Pangenomes

microbiology more details view paper
  • Downloaded 213 times
  • Download rankings, all-time:
    • Site-wide: 40,798 out of 60,239
    • In microbiology: 2,750 out of 4,826
  • Year to date:
    • Site-wide: 16,453 out of 60,239
  • Since beginning of last month:
    • Site-wide: 40,820 out of 60,239

Repository-scale Co- and Re-analysis of Tandem Mass Spectrometry Data

bioinformatics more details view paper
  • Downloaded 207 times
  • Download rankings, all-time:
    • Site-wide: 41,536 out of 60,239
    • In bioinformatics: 4,856 out of 6,078
  • Year to date:
    • Site-wide: 17,101 out of 60,239
  • Since beginning of last month:
    • Site-wide: 1,209 out of 60,239

Temporal, environmental, and biological drivers of the mucosal microbiome in a wild marine fish, Scomber japonicus

ecology more details view paper
  • Downloaded 67 times
  • Download rankings, all-time:
    • Site-wide: 57,823 out of 60,239
    • In ecology: 2,361 out of 2,558
  • Year to date:
    • Site-wide: 48,120 out of 60,239
  • Since beginning of last month:
    • Site-wide: 7,074 out of 60,239

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