Author: Rob Knight
- ORCiD: http://orcid.org/0000-0002-0975-9019
- Most recently observed institution: University of California San Diego
Rankings
- All-time downloads: 82,866 (rank: 1,537 )
- Categories:
- bioinformatics: 17,247 (rank: 318 )
- ecology: 2,183 (rank: 1,026 (tie) )
- epidemiology: 10,048 (rank: 1,184 )
- gastroenterology: 550 (rank: 528 (tie) )
- genetic and genomic medicine: 1,286 (rank: 1,227 (tie) )
- genetics: 1,971 (rank: 8,913 (tie) )
- genomics: 8,390 (rank: 2,271 )
- immunology: 368 (rank: 18,953 (tie) )
- infectious diseases: 10,410 (rank: 3,898 )
- microbiology: 16,952 (rank: 730 )
- molecular biology: 12,325 (rank: 153 (tie) )
- systems biology: 1,136 (rank: 3,571 (tie) )
Downloads per author, site-wide
Preprints
Enabling high-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing
molecular biology more details view paper- Downloaded 12,325 times
- Download rankings, all-time:
- Site-wide: 555
- In molecular biology: 8
- Year to date:
- Site-wide: 678
- Since beginning of last month:
- Site-wide: 678
Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States
infectious diseases more details view paper- Downloaded 7,920 times
- Download rankings, all-time:
- Site-wide: 1,002
- In infectious diseases: 286
- Year to date:
- Site-wide: 47
- Since beginning of last month:
- Site-wide: 47
Emergence of an early SARS-CoV-2 epidemic in the United States
epidemiology more details view paper- Downloaded 5,176 times
- Download rankings, all-time:
- Site-wide: 1,766
- In epidemiology: 207
- Year to date:
- Site-wide: 82
- Since beginning of last month:
- Site-wide: 82
Structure-Based Function Prediction using Graph Convolutional Networks
bioinformatics more details view paper- Downloaded 5,138 times
- Download rankings, all-time:
- Site-wide: 1,785
- In bioinformatics: 151
- Year to date:
- Site-wide: 1,577
- Since beginning of last month:
- Site-wide: 1,577
BugBase Predicts Organism Level Microbiome Phenotypes
bioinformatics more details view paper- Downloaded 3,717 times
- Download rankings, all-time:
- Site-wide: 2,832
- In bioinformatics: 276
- Year to date:
- Site-wide: 12,254
- Since beginning of last month:
- Site-wide: 12,254
Evaluating the information content of shallow shotgun metagenomics
genomics more details view paper- Downloaded 3,648 times
- Download rankings, all-time:
- Site-wide: 2,917
- In genomics: 345
- Year to date:
- Site-wide: 21,971
- Since beginning of last month:
- Site-wide: 21,971
American Gut: an Open Platform for Citizen-Science Microbiome Research
microbiology more details view paper- Downloaded 3,630 times
- Download rankings, all-time:
- Site-wide: 2,937
- In microbiology: 201
- Year to date:
- Site-wide: 17,680
- Since beginning of last month:
- Site-wide: 17,680
Taxonomic Signatures of Long-Term Mortality Risk in Human Gut Microbiota
epidemiology more details view paper- Downloaded 3,370 times
- Download rankings, all-time:
- Site-wide: 3,268
- In epidemiology: 321
- Year to date:
- Site-wide: 17,542
- Since beginning of last month:
- Site-wide: 17,542
Ultra-low input single tube linked-read library method enables short-read NGS systems to generate highly accurate and economical long-range sequencing information for de novo genome assembly and haplotype phasing
genomics more details view paper- Downloaded 2,856 times
- Download rankings, all-time:
- Site-wide: 4,104
- In genomics: 477
- Year to date:
- Site-wide: 9,129
- Since beginning of last month:
- Site-wide: 9,129
Large-scale association analyses identify host factors influencing human gut microbiome composition
genetics more details view paper- Downloaded 1,971 times
- Download rankings, all-time:
- Site-wide: 7,080
- In genetics: 345
- Year to date:
- Site-wide: 2,455
- Since beginning of last month:
- Site-wide: 2,455
Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity
microbiology more details view paper- Downloaded 1,813 times
- Download rankings, all-time:
- Site-wide: 8,034
- In microbiology: 444
- Year to date:
- Site-wide: 5,474
- Since beginning of last month:
- Site-wide: 5,474
Chemically-informed Analyses of Metabolomics Mass Spectrometry Data with Qemistree
bioinformatics more details view paper- Downloaded 1,703 times
- Download rankings, all-time:
- Site-wide: 8,856
- In bioinformatics: 1,086
- Year to date:
- Site-wide: 12,855
- Since beginning of last month:
- Site-wide: 12,855
Algorithmic Learning for Auto-deconvolution of GC-MS Data to Enable Molecular Networking within GNPS.
bioinformatics more details view paper- Downloaded 1,632 times
- Download rankings, all-time:
- Site-wide: 9,466
- In bioinformatics: 1,161
- Year to date:
- Site-wide: 8,681
- Since beginning of last month:
- Site-wide: 8,681
Quantifying and understanding well-to-well contamination in microbiome research
genomics more details view paper- Downloaded 1,574 times
- Download rankings, all-time:
- Site-wide: 9,976
- In genomics: 1,107
- Year to date:
- Site-wide: 53,391
- Since beginning of last month:
- Site-wide: 53,391
Chemical Impacts of the Microbiome Across Scales Reveal Novel Conjugated Bile Acids
microbiology more details view paper- Downloaded 1,373 times
- Download rankings, all-time:
- Site-wide: 12,190
- In microbiology: 679
- Year to date:
- Site-wide: 94,085
- Since beginning of last month:
- Site-wide: 94,085
Links between environment, diet, and the hunter-gatherer microbiome
microbiology more details view paper- Downloaded 1,365 times
- Download rankings, all-time:
- Site-wide: 12,301
- In microbiology: 685
- Year to date:
- Site-wide: 54,620
- Since beginning of last month:
- Site-wide: 54,620
Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules
microbiology more details view paper- Downloaded 1,304 times
- Download rankings, all-time:
- Site-wide: 13,166
- In microbiology: 740
- Year to date:
- Site-wide: 18,173
- Since beginning of last month:
- Site-wide: 18,173
The development of gut microbiota in ostriches and its association with juvenile growth
microbiology more details view paper- Downloaded 1,288 times
- Download rankings, all-time:
- Site-wide: 13,418
- In microbiology: 763
- Year to date:
- Site-wide: 34,409
- Since beginning of last month:
- Site-wide: 34,409
Metagenomic covariation along densely sampled environmental gradients in the Red Sea
microbiology more details view paper- Downloaded 1,213 times
- Download rankings, all-time:
- Site-wide: 14,690
- In microbiology: 826
- Year to date:
- Site-wide: 37,431
- Since beginning of last month:
- Site-wide: 37,431
Dramatic differences in gut bacterial densities help to explain the relationship between diet and habitat in rainforest ants
ecology more details view paper- Downloaded 1,200 times
- Download rankings, all-time:
- Site-wide: 14,932
- In ecology: 253
- Year to date:
- Site-wide: 68,592
- Since beginning of last month:
- Site-wide: 68,592
Species abundance information improves sequence taxonomy classification accuracy
bioinformatics more details view paper- Downloaded 1,033 times
- Download rankings, all-time:
- Site-wide: 18,766
- In bioinformatics: 2,263
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: None
Age and sex-dependent patterns of gut microbial diversity in human adults
microbiology more details view paper- Downloaded 1,012 times
- Download rankings, all-time:
- Site-wide: 19,319
- In microbiology: 1,082
- Year to date:
- Site-wide: 109,371
- Since beginning of last month:
- Site-wide: 109,371
Repository-scale Co- and Re-analysis of Tandem Mass Spectrometry Data
bioinformatics more details view paper- Downloaded 983 times
- Download rankings, all-time:
- Site-wide: 20,100
- In bioinformatics: 2,424
- Year to date:
- Site-wide: 52,784
- Since beginning of last month:
- Site-wide: 52,784
Bacterial community composition and dynamics spanning five years in freshwater bog lakes
microbiology more details view paper- Downloaded 979 times
- Download rankings, all-time:
- Site-wide: 20,237
- In microbiology: 1,136
- Year to date:
- Site-wide: 47,334
- Since beginning of last month:
- Site-wide: 47,334
A Sensitive, Rapid, and Portable CasRx-based Diagnostic Assay for SARS-CoV2
infectious diseases more details view paper- Downloaded 941 times
- Download rankings, all-time:
- Site-wide: 21,414
- In infectious diseases: 1,628
- Year to date:
- Site-wide: 6,333
- Since beginning of last month:
- Site-wide: 6,333
SARS-CoV-2 Infection Among Symptom-Free Healthcare Workers
epidemiology more details view paper- Downloaded 928 times
- Download rankings, all-time:
- Site-wide: 21,842
- In epidemiology: 1,223
- Year to date:
- Site-wide: 18,856
- Since beginning of last month:
- Site-wide: 18,856
MetaRiPPquest: A Peptidogenomics Approach for the Discovery of Ribosomally Synthesized and Post-translationally Modified Peptides
bioinformatics more details view paper- Downloaded 834 times
- Download rankings, all-time:
- Site-wide: 25,438
- In bioinformatics: 3,012
- Year to date:
- Site-wide: 70,249
- Since beginning of last month:
- Site-wide: 70,249
Feasibility of SARS-CoV-2 virus detection from consumer-grade cotton swabs
infectious diseases more details view paper- Downloaded 831 times
- Download rankings, all-time:
- Site-wide: 25,555
- In infectious diseases: 1,789
- Year to date:
- Site-wide: 23,884
- Since beginning of last month:
- Site-wide: 23,884
Reference data based insights expand understanding of human metabolomes
systems biology more details view paper- Downloaded 791 times
- Download rankings, all-time:
- Site-wide: 27,341
- In systems biology: 597
- Year to date:
- Site-wide: 40,249
- Since beginning of last month:
- Site-wide: 40,249
Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort
genetic and genomic medicine more details view paper- Downloaded 786 times
- Download rankings, all-time:
- Site-wide: 27,627
- In genetic and genomic medicine: 81
- Year to date:
- Site-wide: 14,407
- Since beginning of last month:
- Site-wide: 14,407
Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment
infectious diseases more details view paper- Downloaded 718 times
- Download rankings, all-time:
- Site-wide: 31,343
- In infectious diseases: 1,995
- Year to date:
- Site-wide: 4,432
- Since beginning of last month:
- Site-wide: 4,432
Challenges in Benchmarking Metagenomic Profilers
bioinformatics more details view paper- Downloaded 654 times
- Download rankings, all-time:
- Site-wide: 35,492
- In bioinformatics: 3,965
- Year to date:
- Site-wide: 10,547
- Since beginning of last month:
- Site-wide: 10,547
Microbial ecology of Atlantic salmon, Salmo salar, hatcheries: impacts of the built environment on fish mucosal microbiota
microbiology more details view paper- Downloaded 641 times
- Download rankings, all-time:
- Site-wide: 36,501
- In microbiology: 2,175
- Year to date:
- Site-wide: 46,698
- Since beginning of last month:
- Site-wide: 46,698
Revisiting microbe-metabolite interactions: doing better than random
bioinformatics more details view paper- Downloaded 597 times
- Download rankings, all-time:
- Site-wide: 39,945
- In bioinformatics: 4,366
- Year to date:
- Site-wide: 41,596
- Since beginning of last month:
- Site-wide: 41,596
High throughput wastewater SARS-CoV-2 detection enables forecasting of community infection dynamics in San Diego county
epidemiology more details view paper- Downloaded 574 times
- Download rankings, all-time:
- Site-wide: 41,904
- In epidemiology: 1,957
- Year to date:
- Site-wide: 2,804
- Since beginning of last month:
- Site-wide: 2,804
Microbe-metabolite associations linked to the rebounding murine gut microbiome post-colonization with vancomycin resistant Enterococcus faecium
microbiology more details view paper- Downloaded 557 times
- Download rankings, all-time:
- Site-wide: 43,517
- In microbiology: 2,696
- Year to date:
- Site-wide: 40,253
- Since beginning of last month:
- Site-wide: 40,253
A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities
ecology more details view paper- Downloaded 551 times
- Download rankings, all-time:
- Site-wide: 44,123
- In ecology: 1,113
- Year to date:
- Site-wide: 9,901
- Since beginning of last month:
- Site-wide: 9,901
Links between gut microbiome composition and fatty liver disease in a large population sample
gastroenterology more details view paper- Downloaded 550 times
- Download rankings, all-time:
- Site-wide: 44,260
- In gastroenterology: 35
- Year to date:
- Site-wide: 9,878
- Since beginning of last month:
- Site-wide: 9,878
Early prediction of liver disease using conventional risk factors and gut microbiome-augmented gradient boosting
genetic and genomic medicine more details view paper- Downloaded 500 times
- Download rankings, all-time:
- Site-wide: 49,511
- In genetic and genomic medicine: 139
- Year to date:
- Site-wide: 29,666
- Since beginning of last month:
- Site-wide: 29,666
Visualizing 'omic feature rankings and log-ratios using Qurro
bioinformatics more details view paper- Downloaded 491 times
- Download rankings, all-time:
- Site-wide: 50,550
- In bioinformatics: 5,255
- Year to date:
- Site-wide: 74,973
- Since beginning of last month:
- Site-wide: 74,973
EMPress enables tree-guided, interactive, and exploratory analyses of multi-omic datasets
bioinformatics more details view paper- Downloaded 465 times
- Download rankings, all-time:
- Site-wide: 53,745
- In bioinformatics: 5,523
- Year to date:
- Site-wide: 10,546
- Since beginning of last month:
- Site-wide: 10,546
Expanding magnetic organelle biogenesis in the domain Bacteria
microbiology more details view paper- Downloaded 452 times
- Download rankings, all-time:
- Site-wide: 55,409
- In microbiology: 3,601
- Year to date:
- Site-wide: 41,580
- Since beginning of last month:
- Site-wide: 41,580
Temporal, environmental, and biological drivers of the mucosal microbiome in a wild marine fish, Scomber japonicus
ecology more details view paper- Downloaded 432 times
- Download rankings, all-time:
- Site-wide: 58,131
- In ecology: 1,606
- Year to date:
- Site-wide: 53,008
- Since beginning of last month:
- Site-wide: 53,008
The Molecular and Microbial Microenvironments in Chronically Diseased Lungs
microbiology more details view paper- Downloaded 397 times
- Download rankings, all-time:
- Site-wide: 63,263
- In microbiology: 4,229
- Year to date:
- Site-wide: 106,936
- Since beginning of last month:
- Site-wide: 106,936
Multiple sclerosis-associated changes in the composition and immune functions of spore-forming bacteria
immunology more details view paper- Downloaded 368 times
- Download rankings, all-time:
- Site-wide: 68,019
- In immunology: 1,839
- Year to date:
- Site-wide: 104,423
- Since beginning of last month:
- Site-wide: 104,423
Metabolome-informed microbiome analysis refines metadata classifications and reveals unexpected medication transfer in captive cheetahs
systems biology more details view paper- Downloaded 345 times
- Download rankings, all-time:
- Site-wide: 71,848
- In systems biology: 1,753
- Year to date:
- Site-wide: 120,819
- Since beginning of last month:
- Site-wide: 120,819
The Southern Bluefin Tuna mucosal microbiome is influenced by husbandry method, net pen location, and anti-parasite treatment
genomics more details view paper- Downloaded 312 times
- Download rankings, all-time:
- Site-wide: 77,927
- In genomics: 5,194
- Year to date:
- Site-wide: 84,123
- Since beginning of last month:
- Site-wide: 84,123
Red Sea SAR11 and Prochlorococcus Single-cell Genomes Reflect Globally Distributed Pangenomes
microbiology more details view paper- Downloaded 295 times
- Download rankings, all-time:
- Site-wide: 81,243
- In microbiology: 5,716
- Year to date:
- Site-wide: 122,187
- Since beginning of last month:
- Site-wide: 122,187
Characterizing the response of Acinetobacter baumannii ATCC 17978 to azithromycin in multiple in vitro growth conditions
microbiology more details view paper- Downloaded 216 times
- Download rankings, all-time:
- Site-wide: 98,126
- In microbiology: 7,198
- Year to date:
- Site-wide: 37,978
- Since beginning of last month:
- Site-wide: 37,978
Identifying the effect of vancomycin on HA-MRSA strains using bacteriological and physiological media
microbiology more details view paper- Downloaded 202 times
- Download rankings, all-time:
- Site-wide: 101,170
- In microbiology: 7,495
- Year to date:
- Site-wide: 12,484
- Since beginning of last month:
- Site-wide: 12,484
Profiling the effect of nafcillin on HA-MRSA D592 using bacteriological and physiological media
microbiology more details view paper- Downloaded 110 times
- Download rankings, all-time:
- Site-wide: 119,264
- In microbiology: 9,129
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: None
A scale-free, fully connected global transition network underlies known microbiome diversity
microbiology more details view paper- Downloaded 105 times
- Download rankings, all-time:
- Site-wide: 120,076
- In microbiology: 9,222
- Year to date:
- Site-wide: 67,373
- Since beginning of last month:
- Site-wide: 67,373
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News
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