Author: Michael Isaiah Love
- ORCiD: http://orcid.org/0000-0001-8401-0545
- Most recently observed institution: Department of Biostatistics, Department of Genetics, University of North Carolina, Chapel Hill
Rankings
- All-time downloads: 109,275 (rank: 1,889 )
- Categories:
- bioinformatics: 84,992 (rank: 14 )
- cancer biology: 434 (rank: 36,412 (tie) )
- epidemiology: 81 (rank: 43,649 (tie) )
- genetic and genomic medicine: 736 (rank: 9,720 (tie) )
- genetics: 4,641 (rank: 5,286 )
- genomics: 17,489 (rank: 1,199 )
Downloads per author, site-wide
Preprints
Salmon provides accurate, fast, and bias-aware transcript expression estimates using dual-phase inference
bioinformatics more details view paper- Downloaded 25,191 times
- Download rankings, all-time:
- Site-wide: 442
- In bioinformatics: 6
- Year to date:
- Site-wide: 6,946
- Since beginning of last month:
- Site-wide: 18,281
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
bioinformatics more details view paper- Downloaded 23,865 times
- Download rankings, all-time:
- Site-wide: 469
- In bioinformatics: 9
- Year to date:
- Site-wide: 1,942
- Since beginning of last month:
- Site-wide: 1,722
A systematic benchmark of Nanopore long read RNA sequencing for transcript level analysis in human cell lines
genomics more details view paper- Downloaded 7,342 times
- Download rankings, all-time:
- Site-wide: 2,066
- In genomics: 153
- Year to date:
- Site-wide: 4,199
- Since beginning of last month:
- Site-wide: 1,198
Alignment and mapping methodology influence transcript abundance estimation
bioinformatics more details view paper- Downloaded 6,462 times
- Download rankings, all-time:
- Site-wide: 2,464
- In bioinformatics: 160
- Year to date:
- Site-wide: 65,329
- Since beginning of last month:
- Site-wide: 14,925
Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation
bioinformatics more details view paper- Downloaded 4,869 times
- Download rankings, all-time:
- Site-wide: 3,627
- In bioinformatics: 286
- Year to date:
- Site-wide: 41,899
- Since beginning of last month:
- Site-wide: 89,400
An approach for normalization and quality control for NanoString RNA expression data
genomics more details view paper- Downloaded 3,159 times
- Download rankings, all-time:
- Site-wide: 6,801
- In genomics: 643
- Year to date:
- Site-wide: 5,434
- Since beginning of last month:
- Site-wide: 10,405
SAFE-clustering: Single-cell Aggregated (From Ensemble) Clustering for Single-cell RNA-seq Data
bioinformatics more details view paper- Downloaded 3,098 times
- Download rankings, all-time:
- Site-wide: 6,981
- In bioinformatics: 644
- Year to date:
- Site-wide: 74,694
- Since beginning of last month:
- Site-wide: 116,363
Flexible expressed region analysis for RNA-seq with derfinder
bioinformatics more details view paper- Downloaded 2,580 times
- Download rankings, all-time:
- Site-wide: 9,121
- In bioinformatics: 951
- Year to date:
- Site-wide: 42,048
- Since beginning of last month:
- Site-wide: 142,041
zingeR: unlocking RNA-seq tools for zero-inflation and single cell applications
bioinformatics more details view paper- Downloaded 2,390 times
- Download rankings, all-time:
- Site-wide: 10,256
- In bioinformatics: 1,091
- Year to date:
- Site-wide: 64,630
- Since beginning of last month:
- Site-wide: 119,754
Cell-type specific effects of genetic variation on chromatin accessibility during human neuronal differentiation
genetics more details view paper- Downloaded 1,937 times
- Download rankings, all-time:
- Site-wide: 14,116
- In genetics: 559
- Year to date:
- Site-wide: 46,278
- Since beginning of last month:
- Site-wide: 160,776
Plotgardener: Cultivating precise multi-panel figures in R
bioinformatics more details view paper- Downloaded 1,909 times
- Download rankings, all-time:
- Site-wide: 14,418
- In bioinformatics: 1,559
- Year to date:
- Site-wide: 54,395
- Since beginning of last month:
- Site-wide: 17,686
Static And Dynamic DNA Loops Form AP-1 Bound Activation Hubs During Macrophage Development
genomics more details view paper- Downloaded 1,873 times
- Download rankings, all-time:
- Site-wide: 14,861
- In genomics: 1,332
- Year to date:
- Site-wide: 171,246
- Since beginning of last month:
- Site-wide: 148,066
Comparative analysis of neutrophil and monocyte epigenomes
genomics more details view paper- Downloaded 1,827 times
- Download rankings, all-time:
- Site-wide: 15,454
- In genomics: 1,394
- Year to date:
- Site-wide: 122,057
- Since beginning of last month:
- Site-wide: 90,023
Nonparametric expression analysis using inferential replicate counts
bioinformatics more details view paper- Downloaded 1,810 times
- Download rankings, all-time:
- Site-wide: 15,683
- In bioinformatics: 1,699
- Year to date:
- Site-wide: 140,510
- Since beginning of last month:
- Site-wide: 91,008
Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences
bioinformatics more details view paper- Downloaded 1,796 times
- Download rankings, all-time:
- Site-wide: 15,873
- In bioinformatics: 1,746
- Year to date:
- Site-wide: 74,603
- Since beginning of last month:
- Site-wide: 91,256
Temporal analysis suggests a reciprocal relationship between 3D chromatin structure and transcription
genomics more details view paper- Downloaded 1,416 times
- Download rankings, all-time:
- Site-wide: 23,130
- In genomics: 2,031
- Year to date:
- Site-wide: 44,915
- Since beginning of last month:
- Site-wide: 25,732
Genetic influences on cell type specific gene expression and splicing during neurogenesis elucidate regulatory mechanisms of brain traits
genetics more details view paper- Downloaded 1,322 times
- Download rankings, all-time:
- Site-wide: 25,812
- In genetics: 1,042
- Year to date:
- Site-wide: 29,792
- Since beginning of last month:
- Site-wide: 76,949
MOSTWAS: Multi-Omic Strategies for Transcriptome-Wide Association Studies
genetics more details view paper- Downloaded 1,167 times
- Download rankings, all-time:
- Site-wide: 31,429
- In genetics: 1,263
- Year to date:
- Site-wide: 48,353
- Since beginning of last month:
- Site-wide: 78,455
MOVIE: Multi-Omics VIsualization of Estimated contributions
bioinformatics more details view paper- Downloaded 1,130 times
- Download rankings, all-time:
- Site-wide: 33,054
- In bioinformatics: 3,489
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 147,308
Observation weights to unlock bulk RNA-seq tools for zero inflation and single-cell applications
bioinformatics more details view paper- Downloaded 1,115 times
- Download rankings, all-time:
- Site-wide: 33,749
- In bioinformatics: 3,585
- Year to date:
- Site-wide: 99,251
- Since beginning of last month:
- Site-wide: 145,997
MRLocus: identifying causal genes mediating a trait through Bayesian estimation of allelic heterogeneity
bioinformatics more details view paper- Downloaded 965 times
- Download rankings, all-time:
- Site-wide: 42,134
- In bioinformatics: 4,348
- Year to date:
- Site-wide: 164,214
- Since beginning of last month:
- Site-wide: 65,570
matchRanges: Generating null hypothesis genomic ranges via covariate-matched sampling
bioinformatics more details view paper- Downloaded 870 times
- Download rankings, all-time:
- Site-wide: 49,517
- In bioinformatics: 5,096
- Year to date:
- Site-wide: 132,379
- Since beginning of last month:
- Site-wide: 27,920
Tximeta: reference sequence checksums for provenance identification in RNA-seq
bioinformatics more details view paper- Downloaded 851 times
- Download rankings, all-time:
- Site-wide: 51,144
- In bioinformatics: 5,148
- Year to date:
- Site-wide: 117,362
- Since beginning of last month:
- Site-wide: 120,597
Compression of quantification uncertainty for scRNA-seq counts
bioinformatics more details view paper- Downloaded 829 times
- Download rankings, all-time:
- Site-wide: 53,216
- In bioinformatics: 5,363
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 122,997
Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data
bioinformatics more details view paper- Downloaded 781 times
- Download rankings, all-time:
- Site-wide: 58,111
- In bioinformatics: 5,684
- Year to date:
- Site-wide: 87,610
- Since beginning of last month:
- Site-wide: 184,126
Assessing exposure effects on gene expression
genomics more details view paper- Downloaded 780 times
- Download rankings, all-time:
- Site-wide: 58,192
- In genomics: 4,099
- Year to date:
- Site-wide: 116,594
- Since beginning of last month:
- Site-wide: 103,386
Gene-level germline contributions to clinical risk of recurrence scores in Black and White breast cancer patients
genetic and genomic medicine more details view paper- Downloaded 743 times
- Download rankings, all-time:
- Site-wide: 62,580
- In genetic and genomic medicine: 392
- Year to date:
- Site-wide: 102,615
- Since beginning of last month:
- Site-wide: 113,016
A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs
bioinformatics more details view paper- Downloaded 692 times
- Download rankings, all-time:
- Site-wide: 69,383
- In bioinformatics: 6,521
- Year to date:
- Site-wide: 116,254
- Since beginning of last month:
- Site-wide: 200,667
Airpart: Interpretable statistical models for analyzing allelic imbalance in single-cell datasets
bioinformatics more details view paper- Downloaded 621 times
- Download rankings, all-time:
- Site-wide: 79,988
- In bioinformatics: 7,365
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 84,061
Detecting isoform-level allelic imbalance accounting for inferential uncertainty
bioinformatics more details view paper- Downloaded 618 times
- Download rankings, all-time:
- Site-wide: 80,642
- In bioinformatics: 7,563
- Year to date:
- Site-wide: 40,556
- Since beginning of last month:
- Site-wide: 22,698
DeCompress: tissue compartment deconvolution of targeted mRNA expression panels using compressed sensing
bioinformatics more details view paper- Downloaded 577 times
- Download rankings, all-time:
- Site-wide: 87,945
- In bioinformatics: 7,936
- Year to date:
- Site-wide: 67,984
- Since beginning of last month:
- Site-wide: 123,504
Silhouette width using generalized mean - a flexible method for assessing clustering efficiency
bioinformatics more details view paper- Downloaded 558 times
- Download rankings, all-time:
- Site-wide: 91,749
- In bioinformatics: 8,168
- Year to date:
- Site-wide: 73,526
- Since beginning of last month:
- Site-wide: 140,932
Inferring cell-type-specific causal gene regulatory networks during human neurogenesis
genomics more details view paper- Downloaded 544 times
- Download rankings, all-time:
- Site-wide: 94,624
- In genomics: 5,911
- Year to date:
- Site-wide: 81,058
- Since beginning of last month:
- Site-wide: 86,966
Inference of cell-type specific imprinted regulatory elements and genes during human neuronal differentiation
genomics more details view paper- Downloaded 538 times
- Download rankings, all-time:
- Site-wide: 95,897
- In genomics: 5,951
- Year to date:
- Site-wide: 59,322
- Since beginning of last month:
- Site-wide: 63,086
ACTOR: a latent Dirichlet model to compare expressed isoform proportions to a reference panel
bioinformatics more details view paper- Downloaded 533 times
- Download rankings, all-time:
- Site-wide: 96,807
- In bioinformatics: 8,496
- Year to date:
- Site-wide: 144,091
- Since beginning of last month:
- Site-wide: 128,007
Context-Aware Transcript Quantification from Long Read RNA-Seq data with Bambu
bioinformatics more details view paper- Downloaded 447 times
- Download rankings, all-time:
- Site-wide: 117,289
- In bioinformatics: 11,125
- Year to date:
- Site-wide: 2,183
- Since beginning of last month:
- Site-wide: 3,410
A framework for transcriptome-wide association studies in breast cancer in diverse study populations
cancer biology more details view paper- Downloaded 436 times
- Download rankings, all-time:
- Site-wide: 119,985
- In cancer biology: 3,626
- Year to date:
- Site-wide: 166,542
- Since beginning of last month:
- Site-wide: 187,208
bootRanges: Flexible generation of null sets of genomic ranges for hypothesis testing
bioinformatics more details view paper- Downloaded 379 times
- Download rankings, all-time:
- Site-wide: 136,257
- In bioinformatics: 11,245
- Year to date:
- Site-wide: 188,215
- Since beginning of last month:
- Site-wide: 19,359
Comprehensive evaluation of methods for differential expression analysis of metatranscriptomics data
bioinformatics more details view paper- Downloaded 376 times
- Download rankings, all-time:
- Site-wide: 137,185
- In bioinformatics: 12,050
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 7,849
Evaluating brain structure traits as endophenotypes using polygenicity and discoverability
genetics more details view paper- Downloaded 249 times
- Download rankings, all-time:
- Site-wide: 174,942
- In genetics: 6,329
- Year to date:
- Site-wide: 122,744
- Since beginning of last month:
- Site-wide: 162,180
Chromatin loop dynamics during cellular differentiation are associated with changes to both anchor and internal regulatory features
genomics more details view paper- Downloaded 225 times
- Download rankings, all-time:
- Site-wide: 181,414
- In genomics: 9,012
- Year to date:
- Site-wide: 8,224
- Since beginning of last month:
- Site-wide: 18,813
excluderanges: exclusion sets for T2T-CHM13, GRCm39, and other genome assemblies
bioinformatics more details view paper- Downloaded 185 times
- Download rankings, all-time:
- Site-wide: 191,111
- In bioinformatics: 14,456
- Year to date:
- Site-wide: 8,353
- Since beginning of last month:
- Site-wide: 5,792
TreeTerminus - Creating transcript trees using inferential replicate counts
bioinformatics more details view paper- Downloaded 137 times
- Download rankings, all-time:
- Site-wide: 200,707
- In bioinformatics: 14,738
- Year to date:
- Site-wide: 177,444
- Since beginning of last month:
- Site-wide: 41,477
Assessing Etiologic Heterogeneity for Multinomial Outcome with Two-Phase Outcome-Dependent Sampling Design
epidemiology more details view paper- Downloaded 83 times
- Download rankings, all-time:
- Site-wide: 210,714
- In epidemiology: 8,151
- Year to date:
- Site-wide: 176,832
- Since beginning of last month:
- Site-wide: 58,613
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