Rxivist logo

Author: Michael I Love

Rankings

  • All-time downloads: 86,627 (rank: 1,735 )
  • Categories:
    • bioinformatics: 74,040 (rank: 14 )
    • cancer biology: 372 (rank: 24,969 (tie) )
    • genetic and genomic medicine: 254 (rank: 9,876 (tie) )
    • genetics: 3,757 (rank: 4,845 )
    • genomics: 8,204 (rank: 2,847 (tie) )

Downloads per author, site-wide

Preprints

Plotgardener: Cultivating precise multi-panel figures in R

bioinformatics more details view paper

No download data for this paper yet.

Salmon provides accurate, fast, and bias-aware transcript expression estimates using dual-phase inference

bioinformatics more details view paper
  • Downloaded 24,430 times
  • Download rankings, all-time:
    • Site-wide: 319
    • In bioinformatics: 5
  • Year to date:
    • Site-wide: 6,582
  • Since beginning of last month:
    • Site-wide: 5,953

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

bioinformatics more details view paper
  • Downloaded 21,591 times
  • Download rankings, all-time:
    • Site-wide: 367
    • In bioinformatics: 8
  • Year to date:
    • Site-wide: 1,851
  • Since beginning of last month:
    • Site-wide: 27,332

Alignment and mapping methodology influence transcript abundance estimation

bioinformatics more details view paper
  • Downloaded 5,609 times
  • Download rankings, all-time:
    • Site-wide: 2,031
    • In bioinformatics: 150
  • Year to date:
    • Site-wide: 5,234
  • Since beginning of last month:
    • Site-wide: 56,376

Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation

bioinformatics more details view paper
  • Downloaded 4,694 times
  • Download rankings, all-time:
    • Site-wide: 2,603
    • In bioinformatics: 208
  • Year to date:
    • Site-wide: 61,386
  • Since beginning of last month:
    • Site-wide: 77,539

SAFE-clustering: Single-cell Aggregated (From Ensemble) Clustering for Single-cell RNA-seq Data

bioinformatics more details view paper
  • Downloaded 2,934 times
  • Download rankings, all-time:
    • Site-wide: 5,021
    • In bioinformatics: 494
  • Year to date:
    • Site-wide: 37,862
  • Since beginning of last month:
    • Site-wide: 13,105

Flexible expressed region analysis for RNA-seq with derfinder

bioinformatics more details view paper
  • Downloaded 2,430 times
  • Download rankings, all-time:
    • Site-wide: 6,637
    • In bioinformatics: 714
  • Year to date:
    • Site-wide: 87,701
  • Since beginning of last month:
    • Site-wide: None

A systematic benchmark of Nanopore long read RNA sequencing for transcript level analysis in human cell lines

genomics more details view paper
  • Downloaded 2,358 times
  • Download rankings, all-time:
    • Site-wide: 6,939
    • In genomics: 734
  • Year to date:
    • Site-wide: 1,045
  • Since beginning of last month:
    • Site-wide: 4,497

zingeR: unlocking RNA-seq tools for zero-inflation and single cell applications

bioinformatics more details view paper
  • Downloaded 2,093 times
  • Download rankings, all-time:
    • Site-wide: 8,231
    • In bioinformatics: 935
  • Year to date:
    • Site-wide: 60,455
  • Since beginning of last month:
    • Site-wide: 56,542

An approach for normalization and quality control for NanoString RNA expression data

genomics more details view paper
  • Downloaded 1,920 times
  • Download rankings, all-time:
    • Site-wide: 9,367
    • In genomics: 950
  • Year to date:
    • Site-wide: 3,293
  • Since beginning of last month:
    • Site-wide: 36,765

Static And Dynamic DNA Loops Form AP-1 Bound Activation Hubs During Macrophage Development

genomics more details view paper
  • Downloaded 1,725 times
  • Download rankings, all-time:
    • Site-wide: 10,983
    • In genomics: 1,131
  • Year to date:
    • Site-wide: 76,502
  • Since beginning of last month:
    • Site-wide: None

Cell-type specific effects of genetic variation on chromatin accessibility during human neuronal differentiation

genetics more details view paper
  • Downloaded 1,690 times
  • Download rankings, all-time:
    • Site-wide: 11,297
    • In genetics: 503
  • Year to date:
    • Site-wide: 12,714
  • Since beginning of last month:
    • Site-wide: 39,755

Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences

bioinformatics more details view paper
  • Downloaded 1,647 times
  • Download rankings, all-time:
    • Site-wide: 11,768
    • In bioinformatics: 1,364
  • Year to date:
    • Site-wide: 67,168
  • Since beginning of last month:
    • Site-wide: 81,811

Nonparametric expression analysis using inferential replicate counts

bioinformatics more details view paper
  • Downloaded 1,645 times
  • Download rankings, all-time:
    • Site-wide: 11,796
    • In bioinformatics: 1,369
  • Year to date:
    • Site-wide: 76,064
  • Since beginning of last month:
    • Site-wide: 78,117

Comparative analysis of neutrophil and monocyte epigenomes

genomics more details view paper
  • Downloaded 1,611 times
  • Download rankings, all-time:
    • Site-wide: 12,125
    • In genomics: 1,248
  • Year to date:
    • Site-wide: 31,216
  • Since beginning of last month:
    • Site-wide: 124,878

MOVIE: Multi-Omics VIsualization of Estimated contributions

bioinformatics more details view paper
  • Downloaded 1,039 times
  • Download rankings, all-time:
    • Site-wide: 23,295
    • In bioinformatics: 2,666
  • Year to date:
    • Site-wide: 126,802
  • Since beginning of last month:
    • Site-wide: 27,617

MOSTWAS: Multi-Omic Strategies for Transcriptome-Wide Association Studies

genetics more details view paper
  • Downloaded 1,018 times
  • Download rankings, all-time:
    • Site-wide: 23,992
    • In genetics: 1,095
  • Year to date:
    • Site-wide: 54,872
  • Since beginning of last month:
    • Site-wide: 93,206

Observation weights to unlock bulk RNA-seq tools for zero inflation and single-cell applications

bioinformatics more details view paper
  • Downloaded 976 times
  • Download rankings, all-time:
    • Site-wide: 25,539
    • In bioinformatics: 2,894
  • Year to date:
    • Site-wide: 108,086
  • Since beginning of last month:
    • Site-wide: 80,549

Genetic influences on cell type specific gene expression and splicing during neurogenesis elucidate regulatory mechanisms of brain traits

genetics more details view paper
  • Downloaded 866 times
  • Download rankings, all-time:
    • Site-wide: 30,299
    • In genetics: 1,388
  • Year to date:
    • Site-wide: 9,040
  • Since beginning of last month:
    • Site-wide: 23,311

MRLocus: identifying causal genes mediating a trait through Bayesian estimation of allelic heterogeneity

bioinformatics more details view paper
  • Downloaded 815 times
  • Download rankings, all-time:
    • Site-wide: 32,914
    • In bioinformatics: 3,630
  • Year to date:
    • Site-wide: 27,215
  • Since beginning of last month:
    • Site-wide: 96,890

Tximeta: reference sequence checksums for provenance identification in RNA-seq

bioinformatics more details view paper
  • Downloaded 734 times
  • Download rankings, all-time:
    • Site-wide: 38,138
    • In bioinformatics: 4,110
  • Year to date:
    • Site-wide: 87,862
  • Since beginning of last month:
    • Site-wide: 125,326

Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data

bioinformatics more details view paper
  • Downloaded 708 times
  • Download rankings, all-time:
    • Site-wide: 40,062
    • In bioinformatics: 4,304
  • Year to date:
    • Site-wide: 122,896
  • Since beginning of last month:
    • Site-wide: 108,881

Compression of quantification uncertainty for scRNA-seq counts

bioinformatics more details view paper
  • Downloaded 698 times
  • Download rankings, all-time:
    • Site-wide: 40,798
    • In bioinformatics: 4,360
  • Year to date:
    • Site-wide: 64,912
  • Since beginning of last month:
    • Site-wide: 95,868

A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs

bioinformatics more details view paper
  • Downloaded 621 times
  • Download rankings, all-time:
    • Site-wide: 47,451
    • In bioinformatics: 4,930
  • Year to date:
    • Site-wide: 110,684
  • Since beginning of last month:
    • Site-wide: 111,095

Assessing exposure effects on gene expression

genomics more details view paper
  • Downloaded 590 times
  • Download rankings, all-time:
    • Site-wide: 50,673
    • In genomics: 3,877
  • Year to date:
    • Site-wide: 64,258
  • Since beginning of last month:
    • Site-wide: None

Silhouette width using generalized mean - a flexible method for assessing clustering efficiency

bioinformatics more details view paper
  • Downloaded 459 times
  • Download rankings, all-time:
    • Site-wide: 67,750
    • In bioinformatics: 6,492
  • Year to date:
    • Site-wide: 104,584
  • Since beginning of last month:
    • Site-wide: 113,680

DeCompress: tissue compartment deconvolution of targeted mRNA expression panels using compressed sensing

bioinformatics more details view paper
  • Downloaded 427 times
  • Download rankings, all-time:
    • Site-wide: 72,973
    • In bioinformatics: 6,834
  • Year to date:
    • Site-wide: 64,202
  • Since beginning of last month:
    • Site-wide: 58,017

ACTOR: a latent Dirichlet model to compare expressed isoform proportions to a reference panel

bioinformatics more details view paper
  • Downloaded 422 times
  • Download rankings, all-time:
    • Site-wide: 73,932
    • In bioinformatics: 6,891
  • Year to date:
    • Site-wide: 103,751
  • Since beginning of last month:
    • Site-wide: 107,068

A framework for transcriptome-wide association studies in breast cancer in diverse study populations

cancer biology more details view paper
  • Downloaded 372 times
  • Download rankings, all-time:
    • Site-wide: 83,100
    • In cancer biology: 2,447
  • Year to date:
    • Site-wide: 151,632
  • Since beginning of last month:
    • Site-wide: 124,787

Gene-level germline contributions to clinical risk of recurrence scores in Black and White breast cancer patients

genetic and genomic medicine more details view paper
  • Downloaded 254 times
  • Download rankings, all-time:
    • Site-wide: 109,548
    • In genetic and genomic medicine: 551
  • Year to date:
    • Site-wide: 23,171
  • Since beginning of last month:
    • Site-wide: 66,210

Evaluating brain structure traits as endophenotypes using polygenicity and discoverability

genetics more details view paper
  • Downloaded 183 times
  • Download rankings, all-time:
    • Site-wide: 127,132
    • In genetics: 5,221
  • Year to date:
    • Site-wide: 139,756
  • Since beginning of last month:
    • Site-wide: None

Distribution-based comprehensive evaluation ofmethods for differential expression analysis inmetatranscriptomics

bioinformatics more details view paper
  • Downloaded 68 times
  • Download rankings, all-time:
    • Site-wide: 149,440
    • In bioinformatics: 11,355
  • Year to date:
    • Site-wide: 90,155
  • Since beginning of last month:
    • Site-wide: 21,130

PanLingua

News