Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,095 bioRxiv papers from 295,270 authors.

Author: James S. Fraser

Rankings

  • All-time downloads: 18,411 (rank: 1,559 out of 295,231)
  • Categories:
    • biochemistry: 2,575 (rank: 199 out of 11,636)
    • bioinformatics: 481 (rank: 14,634 (tie) out of 25,721)
    • biophysics: 13,744 (rank: 24 out of 11,664)
    • cancer biology: 802 (rank: 4,089 (tie) out of 18,686)
    • systems biology: 809 (rank: 2,518 (tie) out of 8,910)

Downloads per author, site-wide

Preprints

A multi-model approach to assessing local and global cryo-EM map quality

biophysics more details view paper
  • Downloaded 1,680 times
  • Download rankings, all-time:
    • Site-wide: 3,257 out of 67,110
    • In biophysics: 80 out of 2,842
  • Year to date:
    • Site-wide: 8,722 out of 67,110
  • Since beginning of last month:
    • Site-wide: 12,367 out of 67,110

Mapping the Conformational Landscape of a Dynamic Enzyme by XFEL and Multitemperature Crystallography

biophysics more details view paper
  • Downloaded 1,429 times
  • Download rankings, all-time:
    • Site-wide: 4,285 out of 67,110
    • In biophysics: 116 out of 2,842
  • Year to date:
    • Site-wide: 53,616 out of 67,110
  • Since beginning of last month:
    • Site-wide: 56,798 out of 67,110

Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta

biochemistry more details view paper
  • Downloaded 1,053 times
  • Download rankings, all-time:
    • Site-wide: 7,103 out of 67,110
    • In biochemistry: 132 out of 1,974
  • Year to date:
    • Site-wide: 49,139 out of 67,110
  • Since beginning of last month:
    • Site-wide: 47,761 out of 67,110

qFit-ligand reveals widespread conformational heterogeneity of drug-like molecules in X-ray electron density maps

biophysics more details view paper
  • Downloaded 937 times
  • Download rankings, all-time:
    • Site-wide: 8,598 out of 67,110
    • In biophysics: 243 out of 2,842
  • Year to date:
    • Site-wide: 23,999 out of 67,110
  • Since beginning of last month:
    • Site-wide: 36,902 out of 67,110

Effects of α-tubulin acetylation on microtubule structure and stability

biophysics more details view paper
  • Downloaded 928 times
  • Download rankings, all-time:
    • Site-wide: 8,719 out of 67,110
    • In biophysics: 248 out of 2,842
  • Year to date:
    • Site-wide: 2,198 out of 67,110
  • Since beginning of last month:
    • Site-wide: 40,966 out of 67,110

Temperature-Jump Solution X-ray Scattering Reveals Distinct Motions in a Dynamic Enzyme

biophysics more details view paper
  • Downloaded 856 times
  • Download rankings, all-time:
    • Site-wide: 9,873 out of 67,110
    • In biophysics: 290 out of 2,842
  • Year to date:
    • Site-wide: 6,272 out of 67,110
  • Since beginning of last month:
    • Site-wide: 14,666 out of 67,110

Computational design of a modular protein sense/response system

biophysics more details view paper
  • Downloaded 833 times
  • Download rankings, all-time:
    • Site-wide: 10,308 out of 67,110
    • In biophysics: 307 out of 2,842
  • Year to date:
    • Site-wide: 2,646 out of 67,110
  • Since beginning of last month:
    • Site-wide: 3,545 out of 67,110

Side-chain-directed model and map validation for 3D Electron Cryomicroscopy

biophysics more details view paper
  • Downloaded 826 times
  • Download rankings, all-time:
    • Site-wide: 10,445 out of 67,110
    • In biophysics: 313 out of 2,842
  • Year to date:
    • Site-wide: 50,489 out of 67,110
  • Since beginning of last month:
    • Site-wide: 62,156 out of 67,110

Measuring and modeling diffuse scattering in protein X-ray crystallography

biophysics more details view paper
  • Downloaded 825 times
  • Download rankings, all-time:
    • Site-wide: 10,466 out of 67,110
    • In biophysics: 314 out of 2,842
  • Year to date:
    • Site-wide: 53,777 out of 67,110
  • Since beginning of last month:
    • Site-wide: 59,743 out of 67,110

Determination of Ubiquitin Fitness Landscapes Under Different Chemical Stresses in a Classroom Setting

systems biology more details view paper
  • Downloaded 809 times
  • Download rankings, all-time:
    • Site-wide: 10,786 out of 67,110
    • In systems biology: 297 out of 1,863
  • Year to date:
    • Site-wide: 60,274 out of 67,110
  • Since beginning of last month:
    • Site-wide: 50,928 out of 67,110

Co-occurring alterations in the RAS-MAPK pathway limit response to MET inhibitor treatment in MET exon 14 skipping mutation positive lung cancer

cancer biology more details view paper
  • Downloaded 802 times
  • Download rankings, all-time:
    • Site-wide: 10,900 out of 67,110
    • In cancer biology: 317 out of 2,261
  • Year to date:
    • Site-wide: 5,676 out of 67,110
  • Since beginning of last month:
    • Site-wide: 11,558 out of 67,110

Mix-and-inject XFEL crystallography reveals gated conformational dynamics during enzyme catalysis

biochemistry more details view paper
  • Downloaded 724 times
  • Download rankings, all-time:
    • Site-wide: 12,717 out of 67,110
    • In biochemistry: 252 out of 1,974
  • Year to date:
    • Site-wide: 3,416 out of 67,110
  • Since beginning of last month:
    • Site-wide: 7,477 out of 67,110

Comparing serial X-ray crystallography and microcrystal electron diffraction (MicroED) as methods for routine structure determination from small macromolecular crystals

biophysics more details view paper
  • Downloaded 686 times
  • Download rankings, all-time:
    • Site-wide: 13,724 out of 67,110
    • In biophysics: 431 out of 2,842
  • Year to date:
    • Site-wide: 3,728 out of 67,110
  • Since beginning of last month:
    • Site-wide: 5,609 out of 67,110

Exposing hidden alternative backbone conformations in X-ray crystallography using qFit

biophysics more details view paper
  • Downloaded 682 times
  • Download rankings, all-time:
    • Site-wide: 13,832 out of 67,110
    • In biophysics: 439 out of 2,842
  • Year to date:
    • Site-wide: 60,587 out of 67,110
  • Since beginning of last month:
    • Site-wide: 51,164 out of 67,110

Predicting X-ray Diffuse Scattering from Translation Libration Screw Structural Ensembles

biophysics more details view paper
  • Downloaded 672 times
  • Download rankings, all-time:
    • Site-wide: 14,104 out of 67,110
    • In biophysics: 449 out of 2,842
  • Year to date:
    • Site-wide: 61,929 out of 67,110
  • Since beginning of last month:
    • Site-wide: 60,589 out of 67,110

New routes for PTP1B allosteric inhibition by multitemperature crystallography, fragment screening and covalent tethering

biophysics more details view paper
  • Downloaded 625 times
  • Download rankings, all-time:
    • Site-wide: 15,631 out of 67,110
    • In biophysics: 508 out of 2,842
  • Year to date:
    • Site-wide: 42,770 out of 67,110
  • Since beginning of last month:
    • Site-wide: 41,340 out of 67,110

Flexibility and design: conformational heterogeneity along the evolutionary trajectory of a redesigned ubiquitin

biophysics more details view paper
  • Downloaded 584 times
  • Download rankings, all-time:
    • Site-wide: 17,155 out of 67,110
    • In biophysics: 579 out of 2,842
  • Year to date:
    • Site-wide: 57,740 out of 67,110
  • Since beginning of last month:
    • Site-wide: 48,558 out of 67,110

High-resolution cryo-electron microscopy structure of the Escherichia coli 50S subunit and validation of nucleotide modifications

biochemistry more details view paper
  • Downloaded 521 times
  • Download rankings, all-time:
    • Site-wide: 19,970 out of 67,110
    • In biochemistry: 457 out of 1,974
  • Year to date:
    • Site-wide: 5,944 out of 67,110
  • Since beginning of last month:
    • Site-wide: 5,938 out of 67,110

Rescue of Conformational Dynamics in Enzyme Catalysis by Directed Evolution

biophysics more details view paper
  • Downloaded 518 times
  • Download rankings, all-time:
    • Site-wide: 20,115 out of 67,110
    • In biophysics: 712 out of 2,842
  • Year to date:
    • Site-wide: 53,936 out of 67,110
  • Since beginning of last month:
    • Site-wide: 59,317 out of 67,110

Extending Chemical Perturbations Of The Ubiquitin Fitness Landscape In A Classroom Setting

bioinformatics more details view paper
  • Downloaded 481 times
  • Download rankings, all-time:
    • Site-wide: 22,008 out of 67,110
    • In bioinformatics: 3,157 out of 6,614
  • Year to date:
    • Site-wide: 52,169 out of 67,110
  • Since beginning of last month:
    • Site-wide: 47,339 out of 67,110

Bringing Diffuse X-ray Scattering Into Focus

biophysics more details view paper
  • Downloaded 477 times
  • Download rankings, all-time:
    • Site-wide: 22,232 out of 67,110
    • In biophysics: 805 out of 2,842
  • Year to date:
    • Site-wide: 52,856 out of 67,110
  • Since beginning of last month:
    • Site-wide: 56,142 out of 67,110

Model selection for biological crystallography

biophysics more details view paper
  • Downloaded 404 times
  • Download rankings, all-time:
    • Site-wide: 26,964 out of 67,110
    • In biophysics: 1,014 out of 2,842
  • Year to date:
    • Site-wide: 29,844 out of 67,110
  • Since beginning of last month:
    • Site-wide: 30,568 out of 67,110

From deep TLS validation to ensembles of atomic models built from elemental motions

biophysics more details view paper
  • Downloaded 334 times
  • Download rankings, all-time:
    • Site-wide: 32,744 out of 67,110
    • In biophysics: 1,282 out of 2,842
  • Year to date:
    • Site-wide: 62,289 out of 67,110
  • Since beginning of last month:
    • Site-wide: 56,545 out of 67,110

Differences in the chitinolytic activity of mammalian chitinases on soluble and crystalline substrates

biochemistry more details view paper
  • Downloaded 277 times
  • Download rankings, all-time:
    • Site-wide: 38,526 out of 67,110
    • In biochemistry: 1,046 out of 1,974
  • Year to date:
    • Site-wide: 16,258 out of 67,110
  • Since beginning of last month:
    • Site-wide: 12,641 out of 67,110

Assessing positioning in enzymatic catalysis via ketosteroid isomerase conformational ensembles

biophysics more details view paper
  • Downloaded 241 times
  • Download rankings, all-time:
    • Site-wide: 42,804 out of 67,110
    • In biophysics: 1,778 out of 2,842
  • Year to date:
    • Site-wide: 19,860 out of 67,110
  • Since beginning of last month:
    • Site-wide: 8,446 out of 67,110

Liquid-like and rigid-body motions in molecular-dynamics simulations of a crystalline protein

biophysics more details view paper
  • Downloaded 207 times
  • Download rankings, all-time:
    • Site-wide: 47,198 out of 67,110
    • In biophysics: 2,000 out of 2,842
  • Year to date:
    • Site-wide: 24,094 out of 67,110
  • Since beginning of last month:
    • Site-wide: 13,213 out of 67,110

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News