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Author: Joseph DeRisi

Rankings

  • All-time downloads: 45,732 (rank: 932 out of 428,328)
  • Categories:
    • biochemistry: 497 (rank: 8,377 (tie) out of 20,819)
    • bioengineering: 521 (rank: 5,135 (tie) out of 13,286)
    • bioinformatics: 2,136 (rank: 5,694 (tie) out of 36,286)
    • biophysics: 253 (rank: 13,606 (tie) out of 18,229)
    • cell biology: 17,964 (rank: 14 out of 33,012)
    • clinical trials: 1,456 (rank: 188 (tie) out of 1,036)
    • genomics: 3,851 (rank: 5,618 out of 44,710)
    • immunology: 2,209 (rank: 2,275 (tie) out of 26,612)
    • microbiology: 11,974 (rank: 826 out of 50,947)
    • molecular biology: 2,096 (rank: 1,556 (tie) out of 23,555)
    • pharmacology and toxicology: 1,053 (rank: 784 (tie) out of 6,434)
    • scientific communication and education: 646 (rank: 1,214 (tie) out of 3,497)
    • systems biology: 853 (rank: 4,114 (tie) out of 12,504)
    • zoology: 223 (rank: 1,836 (tie) out of 2,577)

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Preprints

Single-cell transcriptomic characterization of 20 organs and tissues from individual mice creates a Tabula Muris

cell biology more details view paper
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    • In cell biology: 2 out of 5,252
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Zika Virus in the Human Placenta and Developing Brain: Cell Tropism and Drug Inhibition

cell biology more details view paper
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    • In cell biology: 25 out of 5,252
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Serological and metagenomic interrogation of cerebrospinal fluid implicates enteroviruses in pediatric acute flaccid myelitis

microbiology more details view paper
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Rapid metagenomic characterization of a case of imported COVID-19 in Cambodia

microbiology more details view paper
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    • In microbiology: 218 out of 9,010
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FLASH: A next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences

microbiology more details view paper
  • Downloaded 2,241 times
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    • In microbiology: 266 out of 9,010
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Etiology of fever in Ugandan children: identification of microbial pathogens using metagenomic next-generation sequencing and IDseq, a platform for unbiased metagenomic analysis

genomics more details view paper
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Topical Silver Diamine Fluoride For Dental Caries Arrest In Preschool Children: A Randomized Controlled Trial

clinical trials more details view paper
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    • In clinical trials: 16 out of 99
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IDseq - An Open Source Cloud-based Pipeline and Analysis Service for Metagenomic Pathogen Detection and Monitoring

bioinformatics more details view paper
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    • In bioinformatics: 1,451 out of 9,295
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    • Site-wide: 1,795 out of 101,401
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    • Site-wide: 2,525 out of 101,401

Exploration of Anti-Yo and Anti-Hu paraneoplastic neurological disorders by PhIP-Seq reveals a highly restricted pattern of antibody epitopes

immunology more details view paper
  • Downloaded 1,139 times
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    • Site-wide: 10,905 out of 101,401
    • In immunology: 326 out of 3,159
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    • Site-wide: 15,006 out of 101,401
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    • Site-wide: 25,059 out of 101,401

Silver microwires from treating tooth decay with silver diamine fluoride

pharmacology and toxicology more details view paper
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    • Site-wide: 12,379 out of 101,401
    • In pharmacology and toxicology: 84 out of 988
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    • Site-wide: 14,167 out of 101,401

Identification of a polymorphism in the N gene of SARS-CoV-2 that adversely impacts detection by a widely-used RT-PCR assay

molecular biology more details view paper
  • Downloaded 968 times
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    • Site-wide: 14,158 out of 101,401
    • In molecular biology: 474 out of 3,517
  • Year to date:
    • Site-wide: 2,770 out of 101,401
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    • Site-wide: 1,054 out of 101,401

Determination of Ubiquitin Fitness Landscapes Under Different Chemical Stresses in a Classroom Setting

systems biology more details view paper
  • Downloaded 853 times
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    • Site-wide: 17,310 out of 101,401
    • In systems biology: 457 out of 2,573
  • Year to date:
    • Site-wide: 99,669 out of 101,401
  • Since beginning of last month:
    • Site-wide: 99,678 out of 101,401

Unbiased metagenomic sequencing for pediatric meningitis in Bangladesh reveals neuroinvasive Chikungunya virus outbreak and other unrealized pathogens

genomics more details view paper
  • Downloaded 848 times
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    • Site-wide: 17,435 out of 101,401
    • In genomics: 2,150 out of 6,281
  • Year to date:
    • Site-wide: 24,529 out of 101,401
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    • Site-wide: 73,558 out of 101,401

Miniaturization and optimization of 384-well compatible metagenomic sequencing library preparation

molecular biology more details view paper
  • Downloaded 685 times
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    • In molecular biology: 801 out of 3,517
  • Year to date:
    • Site-wide: 30,930 out of 101,401
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    • Site-wide: 46,252 out of 101,401

Illuminating Uveitis: Metagenomic Deep Sequencing Identifies Common and Rare Pathogens

scientific communication and education more details view paper
  • Downloaded 646 times
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    • Site-wide: 26,135 out of 101,401
    • In scientific communication and education: 218 out of 674
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    • Site-wide: 93,327 out of 101,401

Metagenomic DNA sequencing for the diagnosis of intraocular infections

genomics more details view paper
  • Downloaded 617 times
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    • Site-wide: 27,881 out of 101,401
    • In genomics: 2,920 out of 6,281
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    • Site-wide: 83,241 out of 101,401

Metagenomics for chronic meningitis: clarifying interpretation and diagnosis

microbiology more details view paper
  • Downloaded 591 times
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    • Site-wide: 29,505 out of 101,401
    • In microbiology: 2,019 out of 9,010
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    • Site-wide: 49,366 out of 101,401

Identification of novel, clinically correlated autoantigens in the monogenic autoimmune syndrome APS1 by PhIP-Seq

immunology more details view paper
  • Downloaded 586 times
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    • In immunology: 859 out of 3,159
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    • Site-wide: 5,973 out of 101,401
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    • Site-wide: 29,352 out of 101,401

Extending Chemical Perturbations Of The Ubiquitin Fitness Landscape In A Classroom Setting

bioinformatics more details view paper
  • Downloaded 554 times
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    • Site-wide: 32,083 out of 101,401
    • In bioinformatics: 4,154 out of 9,295
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    • Site-wide: 99,772 out of 101,401

Investigating Transfusion-Related Sepsis using Culture-Independent Metagenomic Sequencing

microbiology more details view paper
  • Downloaded 523 times
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    • Site-wide: 34,558 out of 101,401
    • In microbiology: 2,395 out of 9,010
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    • Site-wide: 40,302 out of 101,401
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    • Site-wide: 52,212 out of 101,401

Low-Cost Touchscreen Driven Programmable Dual Syringe Pump for Life Science Applications

bioengineering more details view paper
  • Downloaded 521 times
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    • Site-wide: 34,668 out of 101,401
    • In bioengineering: 696 out of 2,366
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    • Site-wide: 75,913 out of 101,401

Metagenomic next-generation sequencing reveals Miamiensis avidus (Ciliophora: Scuticociliatida) in the 2017 epizootic of leopard sharks (Triakis semifasciata) in San Francisco Bay, California

microbiology more details view paper
  • Downloaded 518 times
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    • In microbiology: 2,429 out of 9,010
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    • Site-wide: 54,835 out of 101,401

A Metagenomic Comparison of Tracheal Aspirate and Mini-Bronchial Alveolar Lavage for Assessment of Respiratory Microbiota

microbiology more details view paper
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Deep profiling of protease substrate specificity enabled by dual random and scanned human proteome substrate phage libraries

biochemistry more details view paper
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    • In biochemistry: 1,075 out of 3,457
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    • Site-wide: 11,640 out of 101,401

The Plasmodium falciparum cytoplasmic translation apparatus: a promising therapeutic target not yet exploited by clinically approved antimalarials.

molecular biology more details view paper
  • Downloaded 443 times
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    • Site-wide: 42,263 out of 101,401
    • In molecular biology: 1,383 out of 3,517
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    • Site-wide: 71,575 out of 101,401

Evidence for Alternative Complement Cascade Activation in Primary CNS Vasculitis

immunology more details view paper
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    • In immunology: 1,249 out of 3,159
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    • Site-wide: 56,360 out of 101,401

Integrating Host Response and Unbiased Microbe Detection for Lower Respiratory Tract Infection Diagnosis in Critically Ill Adults

genomics more details view paper
  • Downloaded 403 times
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    • Site-wide: 60,018 out of 101,401

Microbiome and Antimicrobial Resistance Gene Dynamics in International Travelers

microbiology more details view paper
  • Downloaded 335 times
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    • Site-wide: 55,905 out of 101,401
    • In microbiology: 4,255 out of 9,010
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    • Site-wide: 98,319 out of 101,401
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    • Site-wide: 97,970 out of 101,401

Pediatric Brainstem Encephalitis Outbreak Investigation with Metagenomic Next-Generation Sequencing

microbiology more details view paper
  • Downloaded 327 times
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    • Site-wide: 57,226 out of 101,401
    • In microbiology: 4,363 out of 9,010
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    • Site-wide: 94,827 out of 101,401

Designing and implementing programmable depletion in sequencing libraries with DASHit

microbiology more details view paper
  • Downloaded 323 times
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    • Site-wide: 57,692 out of 101,401
    • In microbiology: 4,426 out of 9,010
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    • Site-wide: 34,560 out of 101,401

MinorityReport, software for generalized analysis of causal genetic variants

bioinformatics more details view paper
  • Downloaded 286 times
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    • Site-wide: 63,494 out of 101,401
    • In bioinformatics: 6,773 out of 9,295
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    • Site-wide: 99,129 out of 101,401

An exploration of ambigrammatic sequences in narnaviruses

genomics more details view paper
  • Downloaded 262 times
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    • In genomics: 5,045 out of 6,281
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    • Site-wide: 93,995 out of 101,401

Label-free imaging and classification of live P. falciparum

biophysics more details view paper
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    • In biophysics: 3,038 out of 4,474
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    • Site-wide: 1,757 out of 101,401

A Fixed Moderate-dose Combination of Tiletamine+Zolazepam Outperforms Midazolam in Induction of Short-term Immobilization of Ball Pythons (Python regius)

zoology more details view paper
  • Downloaded 223 times
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    • In zoology: 359 out of 529
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    • Site-wide: 89,971 out of 101,401
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    • Site-wide: 83,971 out of 101,401

Avian keratin disorder of Alaska black-capped chickadees is associated with Poecivirus infection

microbiology more details view paper
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    • Site-wide: 87,059 out of 101,401

Zika virus alters centrosome organization to suppress the innate immune response

cell biology more details view paper
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    • Site-wide: 82,229 out of 101,401
    • In cell biology: 4,274 out of 5,252
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    • Site-wide: 3,053 out of 101,401

Poecivirus is present in individuals with beak deformities in seven species of North American birds

microbiology more details view paper
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    • Site-wide: 83,079 out of 101,401
    • In microbiology: 6,906 out of 9,010
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    • Site-wide: 40,975 out of 101,401

Inoculation by mosquito induces durable differences in serological profile in non-human primates infected with DENV1

immunology more details view paper
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    • Site-wide: 98,787 out of 101,401
    • In immunology: 3,056 out of 3,159
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    • Site-wide: 94,759 out of 101,401
  • Since beginning of last month:
    • Site-wide: 16,389 out of 101,401

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