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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,524 bioRxiv papers from 264,866 authors.

Author: Rhiju Das

Rankings

  • All-time downloads: 17,278 (rank: 1,411 out of 264,866)
  • Categories:
    • biochemistry: 6,097 (rank: 10 out of 9,635)
    • bioengineering: 580 (rank: 1,774 (tie) out of 6,159)
    • bioinformatics: 725 (rank: 9,532 (tie) out of 23,134)
    • biophysics: 9,876 (rank: 16 out of 9,880)

Downloads per author, site-wide

Preprints

The Rosetta all-atom energy function for macromolecular modeling and design

biophysics more details view paper
  • Downloaded 2,668 times
  • Download rankings, all-time:
    • Site-wide: 1,234 out of 57,524
    • In biophysics: 26 out of 2,432
  • Year to date:
    • Site-wide: 14,161 out of 57,524
  • Since beginning of last month:
    • Site-wide: 13,524 out of 57,524

Correcting a SHAPE-directed RNA structure by a mutate-map-rescue approach

biochemistry more details view paper
  • Downloaded 1,570 times
  • Download rankings, all-time:
    • Site-wide: 3,091 out of 57,524
    • In biochemistry: 57 out of 1,646
  • Year to date:
    • Site-wide: 44,204 out of 57,524
  • Since beginning of last month:
    • Site-wide: 51,411 out of 57,524

MOHCA-seq: RNA 3D models from single multiplexed proximity-mapping experiments

biochemistry more details view paper
  • Downloaded 1,370 times
  • Download rankings, all-time:
    • Site-wide: 3,878 out of 57,524
    • In biochemistry: 70 out of 1,646
  • Year to date:
    • Site-wide: 46,051 out of 57,524
  • Since beginning of last month:
    • Site-wide: 46,191 out of 57,524

Prospects for recurrent neural network models to learn RNA biophysics from high-throughput data

biophysics more details view paper
  • Downloaded 1,111 times
  • Download rankings, all-time:
    • Site-wide: 5,444 out of 57,524
    • In biophysics: 144 out of 2,432
  • Year to date:
    • Site-wide: 7,993 out of 57,524
  • Since beginning of last month:
    • Site-wide: 12,698 out of 57,524

RNA Structure Refinement using the ERRASER-Phenix pipeline

biophysics more details view paper
  • Downloaded 1,085 times
  • Download rankings, all-time:
    • Site-wide: 5,670 out of 57,524
    • In biophysics: 152 out of 2,432
  • Year to date:
    • Site-wide: 38,486 out of 57,524
  • Since beginning of last month:
    • Site-wide: 48,093 out of 57,524

Bayesian Energy Landscape Tilting: Towards Concordant Models of Molecular Ensembles

biophysics more details view paper
  • Downloaded 807 times
  • Download rankings, all-time:
    • Site-wide: 9,090 out of 57,524
    • In biophysics: 257 out of 2,432
  • Year to date:
    • Site-wide: 46,394 out of 57,524
  • Since beginning of last month:
    • Site-wide: 42,232 out of 57,524

Spontaneous driving forces give rise to protein-RNA condensates with coexisting phases and complex material properties

biophysics more details view paper
  • Downloaded 803 times
  • Download rankings, all-time:
    • Site-wide: 9,158 out of 57,524
    • In biophysics: 262 out of 2,432
  • Year to date:
    • Site-wide: 4,921 out of 57,524
  • Since beginning of last month:
    • Site-wide: 27,825 out of 57,524

RNA structure through multidimensional chemical mapping

biochemistry more details view paper
  • Downloaded 774 times
  • Download rankings, all-time:
    • Site-wide: 9,669 out of 57,524
    • In biochemistry: 186 out of 1,646
  • Year to date:
    • Site-wide: 49,145 out of 57,524
  • Since beginning of last month:
    • Site-wide: 42,766 out of 57,524

EternaBrain: Automated RNA design through move sets and strategies from an Internet-scale RNA videogame

bioinformatics more details view paper
  • Downloaded 725 times
  • Download rankings, all-time:
    • Site-wide: 10,614 out of 57,524
    • In bioinformatics: 1,811 out of 5,864
  • Year to date:
    • Site-wide: 4,701 out of 57,524
  • Since beginning of last month:
    • Site-wide: 9,467 out of 57,524

De novo computational RNA modeling into cryoEM maps of large ribonucleoprotein complexes

biophysics more details view paper
  • Downloaded 686 times
  • Download rankings, all-time:
    • Site-wide: 11,477 out of 57,524
    • In biophysics: 351 out of 2,432
  • Year to date:
    • Site-wide: 12,204 out of 57,524
  • Since beginning of last month:
    • Site-wide: 9,741 out of 57,524

Blind prediction of noncanonical RNA structure at atomic accuracy

biochemistry more details view paper
  • Downloaded 681 times
  • Download rankings, all-time:
    • Site-wide: 11,596 out of 57,524
    • In biochemistry: 225 out of 1,646
  • Year to date:
    • Site-wide: 32,738 out of 57,524
  • Since beginning of last month:
    • Site-wide: 35,569 out of 57,524

RNA tertiary structure energetics predicted by an ensemble model of the RNA double helix

biophysics more details view paper
  • Downloaded 626 times
  • Download rankings, all-time:
    • Site-wide: 13,044 out of 57,524
    • In biophysics: 398 out of 2,432
  • Year to date:
    • Site-wide: 8,373 out of 57,524
  • Since beginning of last month:
    • Site-wide: 15,600 out of 57,524

Computational Design of Asymmetric Three-dimensional RNA Structures and Machines.

bioengineering more details view paper
  • Downloaded 580 times
  • Download rankings, all-time:
    • Site-wide: 14,463 out of 57,524
    • In bioengineering: 237 out of 1,104
  • Year to date:
    • Site-wide: 14,759 out of 57,524
  • Since beginning of last month:
    • Site-wide: 11,986 out of 57,524

A quantitative and predictive model for RNA binding by human Pumilio proteins

biochemistry more details view paper
  • Downloaded 558 times
  • Download rankings, all-time:
    • Site-wide: 15,276 out of 57,524
    • In biochemistry: 312 out of 1,646
  • Year to date:
    • Site-wide: 14,622 out of 57,524
  • Since beginning of last month:
    • Site-wide: 13,080 out of 57,524

Rich structure landscapes in both natural and artificial RNAs revealed by mutate-and-map analysis

biochemistry more details view paper
  • Downloaded 449 times
  • Download rankings, all-time:
    • Site-wide: 19,861 out of 57,524
    • In biochemistry: 442 out of 1,646
  • Year to date:
    • Site-wide: 51,168 out of 57,524
  • Since beginning of last month:
    • Site-wide: 28,734 out of 57,524

Ribosolve: Rapid determination of three-dimensional RNA-only structures

biophysics more details view paper
  • Downloaded 433 times
  • Download rankings, all-time:
    • Site-wide: 20,734 out of 57,524
    • In biophysics: 748 out of 2,432
  • Year to date:
    • Site-wide: 4,549 out of 57,524
  • Since beginning of last month:
    • Site-wide: 309 out of 57,524

Modeling Small Non-canonical RNA Motifs with the Rosetta FARFAR Server

biophysics more details view paper
  • Downloaded 412 times
  • Download rankings, all-time:
    • Site-wide: 21,909 out of 57,524
    • In biophysics: 800 out of 2,432
  • Year to date:
    • Site-wide: 46,302 out of 57,524
  • Since beginning of last month:
    • Site-wide: 42,303 out of 57,524

Quantitative high-throughput tests of ubiquitous RNA secondary structure prediction algorithms via RNA/protein binding

biophysics more details view paper
  • Downloaded 385 times
  • Download rankings, all-time:
    • Site-wide: 23,553 out of 57,524
    • In biophysics: 871 out of 2,432
  • Year to date:
    • Site-wide: 5,494 out of 57,524
  • Since beginning of last month:
    • Site-wide: 9,960 out of 57,524

Sampling native-like structures of RNA-protein complexes through Rosetta folding and docking

biophysics more details view paper
  • Downloaded 342 times
  • Download rankings, all-time:
    • Site-wide: 26,510 out of 57,524
    • In biophysics: 1,004 out of 2,432
  • Year to date:
    • Site-wide: 23,388 out of 57,524
  • Since beginning of last month:
    • Site-wide: 19,561 out of 57,524

Allosteric Mechanism of the V. vulnificus Adenine Riboswitch Resolved by Four-dimensional Chemical Mapping

biochemistry more details view paper
  • Downloaded 300 times
  • Download rankings, all-time:
    • Site-wide: 29,911 out of 57,524
    • In biochemistry: 748 out of 1,646
  • Year to date:
    • Site-wide: 42,306 out of 57,524
  • Since beginning of last month:
    • Site-wide: 22,293 out of 57,524

Blind tests of RNA nearest neighbor energy prediction

biophysics more details view paper
  • Downloaded 285 times
  • Download rankings, all-time:
    • Site-wide: 31,201 out of 57,524
    • In biophysics: 1,222 out of 2,432
  • Year to date:
    • Site-wide: 53,470 out of 57,524
  • Since beginning of last month:
    • Site-wide: 50,319 out of 57,524

RNA structure inference through chemical mapping after accidental or intentional mutations

biochemistry more details view paper
  • Downloaded 254 times
  • Download rankings, all-time:
    • Site-wide: 34,251 out of 57,524
    • In biochemistry: 905 out of 1,646
  • Year to date:
    • Site-wide: 56,197 out of 57,524
  • Since beginning of last month:
    • Site-wide: 55,520 out of 57,524

Automated design of highly diverse riboswitches

biophysics more details view paper
  • Downloaded 233 times
  • Download rankings, all-time:
    • Site-wide: 36,345 out of 57,524
    • In biophysics: 1,477 out of 2,432
  • Year to date:
    • Site-wide: 12,211 out of 57,524
  • Since beginning of last month:
    • Site-wide: 17,462 out of 57,524

LIkelihood-based Fits of Folding Transitions (LIFFT) for Biomolecule Mapping Data

biochemistry more details view paper
  • Downloaded 141 times
  • Download rankings, all-time:
    • Site-wide: 47,356 out of 57,524
    • In biochemistry: 1,350 out of 1,646
  • Year to date:
    • Site-wide: 50,201 out of 57,524
  • Since beginning of last month:
    • Site-wide: 47,862 out of 57,524

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