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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,466 bioRxiv papers from 297,533 authors.

Author: Rhiju Das

Rankings

  • All-time downloads: 19,535 (rank: 1,442 out of 297,643)
  • Categories:
    • biochemistry: 6,640 (rank: 11 out of 11,716)
    • bioengineering: 640 (rank: 2,035 (tie) out of 7,542)
    • bioinformatics: 838 (rank: 9,696 (tie) out of 25,899)
    • biophysics: 11,058 (rank: 35 out of 11,764)
    • molecular biology: 359 (rank: 6,786 (tie) out of 14,241)

Downloads per author, site-wide

Preprints

The Rosetta all-atom energy function for macromolecular modeling and design

biophysics more details view paper
  • Downloaded 2,733 times
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    • Site-wide: 1,403 out of 67,466
    • In biophysics: 34 out of 2,861
  • Year to date:
    • Site-wide: 17,039 out of 67,466
  • Since beginning of last month:
    • Site-wide: 23,333 out of 67,466

Correcting a SHAPE-directed RNA structure by a mutate-map-rescue approach

biochemistry more details view paper
  • Downloaded 1,609 times
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    • Site-wide: 3,533 out of 67,466
    • In biochemistry: 70 out of 1,983
  • Year to date:
    • Site-wide: 48,570 out of 67,466
  • Since beginning of last month:
    • Site-wide: 20,024 out of 67,466

MOHCA-seq: RNA 3D models from single multiplexed proximity-mapping experiments

biochemistry more details view paper
  • Downloaded 1,400 times
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    • Site-wide: 4,482 out of 67,466
    • In biochemistry: 87 out of 1,983
  • Year to date:
    • Site-wide: 53,014 out of 67,466
  • Since beginning of last month:
    • Site-wide: 47,223 out of 67,466

Prospects for recurrent neural network models to learn RNA biophysics from high-throughput data

biophysics more details view paper
  • Downloaded 1,209 times
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    • Site-wide: 5,709 out of 67,466
    • In biophysics: 163 out of 2,861
  • Year to date:
    • Site-wide: 9,398 out of 67,466
  • Since beginning of last month:
    • Site-wide: 32,889 out of 67,466

RNA Structure Refinement using the ERRASER-Phenix pipeline

biophysics more details view paper
  • Downloaded 1,103 times
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    • Site-wide: 6,671 out of 67,466
    • In biophysics: 194 out of 2,861
  • Year to date:
    • Site-wide: 50,354 out of 67,466
  • Since beginning of last month:
    • Site-wide: 61,758 out of 67,466

Ribosolve: Rapid determination of three-dimensional RNA-only structures

biophysics more details view paper
  • Downloaded 873 times
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    • Site-wide: 9,678 out of 67,466
    • In biophysics: 284 out of 2,861
  • Year to date:
    • Site-wide: 2,497 out of 67,466
  • Since beginning of last month:
    • Site-wide: 3,283 out of 67,466

Spontaneous driving forces give rise to protein-RNA condensates with coexisting phases and complex material properties

biophysics more details view paper
  • Downloaded 861 times
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    • Site-wide: 9,901 out of 67,466
    • In biophysics: 294 out of 2,861
  • Year to date:
    • Site-wide: 7,271 out of 67,466
  • Since beginning of last month:
    • Site-wide: 16,699 out of 67,466

EternaBrain: Automated RNA design through move sets and strategies from an Internet-scale RNA videogame

bioinformatics more details view paper
  • Downloaded 838 times
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    • Site-wide: 10,311 out of 67,466
    • In bioinformatics: 1,765 out of 6,645
  • Year to date:
    • Site-wide: 5,805 out of 67,466
  • Since beginning of last month:
    • Site-wide: 12,006 out of 67,466

Bayesian Energy Landscape Tilting: Towards Concordant Models of Molecular Ensembles

biophysics more details view paper
  • Downloaded 820 times
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    • Site-wide: 10,682 out of 67,466
    • In biophysics: 326 out of 2,861
  • Year to date:
    • Site-wide: 59,140 out of 67,466
  • Since beginning of last month:
    • Site-wide: 52,266 out of 67,466

RNA structure through multidimensional chemical mapping

biochemistry more details view paper
  • Downloaded 795 times
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    • Site-wide: 11,202 out of 67,466
    • In biochemistry: 219 out of 1,983
  • Year to date:
    • Site-wide: 58,890 out of 67,466
  • Since beginning of last month:
    • Site-wide: 44,446 out of 67,466

De novo computational RNA modeling into cryoEM maps of large ribonucleoprotein complexes

biophysics more details view paper
  • Downloaded 761 times
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    • Site-wide: 11,945 out of 67,466
    • In biophysics: 368 out of 2,861
  • Year to date:
    • Site-wide: 14,413 out of 67,466
  • Since beginning of last month:
    • Site-wide: 27,194 out of 67,466

Blind prediction of noncanonical RNA structure at atomic accuracy

biochemistry more details view paper
  • Downloaded 719 times
  • Download rankings, all-time:
    • Site-wide: 12,985 out of 67,466
    • In biochemistry: 264 out of 1,983
  • Year to date:
    • Site-wide: 38,726 out of 67,466
  • Since beginning of last month:
    • Site-wide: 44,465 out of 67,466

RNA tertiary structure energetics predicted by an ensemble model of the RNA double helix

biophysics more details view paper
  • Downloaded 693 times
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    • Site-wide: 13,665 out of 67,466
    • In biophysics: 433 out of 2,861
  • Year to date:
    • Site-wide: 11,074 out of 67,466
  • Since beginning of last month:
    • Site-wide: 31,519 out of 67,466

A quantitative and predictive model for RNA binding by human Pumilio proteins

biochemistry more details view paper
  • Downloaded 640 times
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    • Site-wide: 15,286 out of 67,466
    • In biochemistry: 320 out of 1,983
  • Year to date:
    • Site-wide: 15,902 out of 67,466
  • Since beginning of last month:
    • Site-wide: 14,110 out of 67,466

Computational Design of Asymmetric Three-dimensional RNA Structures and Machines.

bioengineering more details view paper
  • Downloaded 640 times
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    • Site-wide: 15,266 out of 67,466
    • In bioengineering: 266 out of 1,362
  • Year to date:
    • Site-wide: 18,050 out of 67,466
  • Since beginning of last month:
    • Site-wide: 22,763 out of 67,466

Quantitative high-throughput tests of ubiquitous RNA secondary structure prediction algorithms via RNA/protein binding

biophysics more details view paper
  • Downloaded 527 times
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    • Site-wide: 19,946 out of 67,466
    • In biophysics: 706 out of 2,861
  • Year to date:
    • Site-wide: 6,002 out of 67,466
  • Since beginning of last month:
    • Site-wide: 18,985 out of 67,466

Rich structure landscapes in both natural and artificial RNAs revealed by mutate-and-map analysis

biochemistry more details view paper
  • Downloaded 468 times
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    • Site-wide: 23,115 out of 67,466
    • In biochemistry: 550 out of 1,983
  • Year to date:
    • Site-wide: 61,150 out of 67,466
  • Since beginning of last month:
    • Site-wide: 56,070 out of 67,466

Modeling Small Non-canonical RNA Motifs with the Rosetta FARFAR Server

biophysics more details view paper
  • Downloaded 455 times
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    • Site-wide: 23,848 out of 67,466
    • In biophysics: 890 out of 2,861
  • Year to date:
    • Site-wide: 48,921 out of 67,466
  • Since beginning of last month:
    • Site-wide: 15,738 out of 67,466

Sampling native-like structures of RNA-protein complexes through Rosetta folding and docking

biophysics more details view paper
  • Downloaded 400 times
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    • Site-wide: 27,595 out of 67,466
    • In biophysics: 1,052 out of 2,861
  • Year to date:
    • Site-wide: 26,228 out of 67,466
  • Since beginning of last month:
    • Site-wide: 24,059 out of 67,466

Learning cis-regulatory principles of ADAR-based RNA editing from CRISPR-mediated mutagenesis

molecular biology more details view paper
  • Downloaded 359 times
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    • Site-wide: 30,934 out of 67,466
    • In molecular biology: 907 out of 2,157
  • Year to date:
    • Site-wide: 11,397 out of 67,466
  • Since beginning of last month:
    • Site-wide: 387 out of 67,466

Allosteric Mechanism of the V. vulnificus Adenine Riboswitch Resolved by Four-dimensional Chemical Mapping

biochemistry more details view paper
  • Downloaded 331 times
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    • Site-wide: 33,451 out of 67,466
    • In biochemistry: 886 out of 1,983
  • Year to date:
    • Site-wide: 49,464 out of 67,466
  • Since beginning of last month:
    • Site-wide: 48,814 out of 67,466

Automated design of highly diverse riboswitches

biophysics more details view paper
  • Downloaded 325 times
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    • Site-wide: 33,987 out of 67,466
    • In biophysics: 1,348 out of 2,861
  • Year to date:
    • Site-wide: 13,254 out of 67,466
  • Since beginning of last month:
    • Site-wide: 18,465 out of 67,466

Blind tests of RNA nearest neighbor energy prediction

biophysics more details view paper
  • Downloaded 298 times
  • Download rankings, all-time:
    • Site-wide: 36,681 out of 67,466
    • In biophysics: 1,470 out of 2,861
  • Year to date:
    • Site-wide: 64,411 out of 67,466
  • Since beginning of last month:
    • Site-wide: 63,533 out of 67,466

RNA structure inference through chemical mapping after accidental or intentional mutations

biochemistry more details view paper
  • Downloaded 266 times
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    • Site-wide: 40,253 out of 67,466
    • In biochemistry: 1,116 out of 1,983
  • Year to date:
    • Site-wide: 66,091 out of 67,466
  • Since beginning of last month:
    • Site-wide: 62,726 out of 67,466

FARFAR2: Improved de novo Rosetta prediction of complex global RNA folds

biochemistry more details view paper
  • Downloaded 257 times
  • Download rankings, all-time:
    • Site-wide: 41,329 out of 67,466
    • In biochemistry: 1,143 out of 1,983
  • Year to date:
    • Site-wide: 18,621 out of 67,466
  • Since beginning of last month:
    • Site-wide: 8,445 out of 67,466

LIkelihood-based Fits of Folding Transitions (LIFFT) for Biomolecule Mapping Data

biochemistry more details view paper
  • Downloaded 155 times
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    • Site-wide: 55,064 out of 67,466
    • In biochemistry: 1,602 out of 1,983
  • Year to date:
    • Site-wide: 61,854 out of 67,466
  • Since beginning of last month:
    • Site-wide: 61,996 out of 67,466

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