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Author: Mikhail Spivakov

Rankings

  • All-time downloads: 11,767 (rank: 6,918 out of 404,161)
  • Categories:
    • bioinformatics: 2,224 (rank: 5,044 (tie) out of 34,272)
    • genetics: 663 (rank: 18,101 (tie) out of 36,792)
    • genomics: 7,578 (rank: 2,201 out of 42,763)
    • molecular biology: 1,302 (rank: 2,815 (tie) out of 21,566)

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Preprints

CHiCAGO: Robust Detection of DNA Looping Interactions in Capture Hi-C data

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Cohesin-dependent and independent mechanisms support chromosomal contacts between promoters and enhancers

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A Comparison of Peak Callers Used for DNase-seq Data

bioinformatics more details view paper
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Chromosome contacts in activated T cells identify autoimmune disease candidate genes

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Gene regulatory network reconstruction incorporating 3D chromosomal architecture reveals key transcription factors and DNA elements driving neural lineage commitment

molecular biology more details view paper
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DNA methylation oscillation defines classes of enhancers

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Functional effects of variation in transcription factor binding highlight long-range gene regulation by epromoters

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Chicdiff: a computational pipeline for detecting differential chromosomal interactions in Capture Hi-C data

bioinformatics more details view paper
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Variation in PU.1 binding and chromatin looping at neutrophil enhancers influences autoimmune disease susceptibility

genetics more details view paper
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