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Author: Pardis C Sabeti

  • ORCiD: http://orcid.org/0000-0002-9843-1890
  • Most recently observed institution: FAS Center for Systems Biology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA.

Rankings

  • All-time downloads: 79,993 (rank: 2,556 )
  • Categories:
    • bioinformatics: 6,476 (rank: 2,119 (tie) )
    • epidemiology: 26,289 (rank: 899 )
    • evolutionary biology: 3,958 (rank: 1,142 )
    • genetic and genomic medicine: 1,496 (rank: 3,586 (tie) )
    • genetics: 2,445 (rank: 9,076 )
    • genomics: 22,219 (rank: 622 )
    • immunology: 3,265 (rank: 4,335 (tie) )
    • infectious diseases: 4,997 (rank: 11,347 (tie) )
    • microbiology: 2,276 (rank: 8,371 (tie) )
    • molecular biology: 3,117 (rank: 1,675 )
    • neurology: 1,986 (rank: 768 (tie) )
    • neuroscience: 232 (rank: 85,235 (tie) )
    • pathology: 1,237 (rank: 1,308 (tie) )

Downloads per author, site-wide

Preprints

In vivo single-cell profiling of lncRNAs during Ebola virus infection

genomics more details view paper

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Phylogenetic analysis of SARS-CoV-2 in the Boston area highlights the role of recurrent importation and superspreading events

epidemiology more details view paper
  • Downloaded 19,010 times
  • Download rankings, all-time:
    • Site-wide: 522
    • In epidemiology: 87
  • Year to date:
    • Site-wide: 4,554
  • Since beginning of last month:
    • Site-wide: 7,876

CRISPR-based surveillance for COVID-19 using genomically-comprehensive machine learning design

genomics more details view paper
  • Downloaded 8,784 times
  • Download rankings, all-time:
    • Site-wide: 1,366
    • In genomics: 95
  • Year to date:
    • Site-wide: 9,362
  • Since beginning of last month:
    • Site-wide: 10,013

A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2

genomics more details view paper
  • Downloaded 5,163 times
  • Download rankings, all-time:
    • Site-wide: 2,734
    • In genomics: 240
  • Year to date:
    • Site-wide: 2,530
  • Since beginning of last month:
    • Site-wide: 3,867

Evidence of transmission from fully vaccinated individuals in a large outbreak of the SARS-CoV-2 Delta variant in Provincetown, Massachusetts

infectious diseases more details view paper
  • Downloaded 4,997 times
  • Download rankings, all-time:
    • Site-wide: 2,859
    • In infectious diseases: 718
  • Year to date:
    • Site-wide: 2,400
  • Since beginning of last month:
    • Site-wide: 227

Analysis of 2.1 million SARS-CoV-2 genomes identifies mutations associated with transmissibility

epidemiology more details view paper
  • Downloaded 4,172 times
  • Download rankings, all-time:
    • Site-wide: 3,635
    • In epidemiology: 389
  • Year to date:
    • Site-wide: 1,838
  • Since beginning of last month:
    • Site-wide: 633

Identifying Gene Expression Programs of Cell-type Identity and Cellular Activity with Single-Cell RNA-Seq

bioinformatics more details view paper
  • Downloaded 3,493 times
  • Download rankings, all-time:
    • Site-wide: 4,668
    • In bioinformatics: 423
  • Year to date:
    • Site-wide: 33,601
  • Since beginning of last month:
    • Site-wide: 70,649

SARS-CoV-2 infected cells present HLA-I peptides from canonical and out-of-frame ORFs

immunology more details view paper
  • Downloaded 3,265 times
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    • Site-wide: 5,133
    • In immunology: 197
  • Year to date:
    • Site-wide: 22,255
  • Since beginning of last month:
    • Site-wide: 15,881

Comparative evidence for the independent evolution of hair and sweat gland traits in primates

evolutionary biology more details view paper
  • Downloaded 2,752 times
  • Download rankings, all-time:
    • Site-wide: 6,565
    • In evolutionary biology: 134
  • Year to date:
    • Site-wide: 73,224
  • Since beginning of last month:
    • Site-wide: 161,267

HCR-FlowFISH: A flexible CRISPR screening method to identify cis-regulatory elements and their target genes

genomics more details view paper
  • Downloaded 2,658 times
  • Download rankings, all-time:
    • Site-wide: 6,903
    • In genomics: 673
  • Year to date:
    • Site-wide: 17,175
  • Since beginning of last month:
    • Site-wide: 18,086

SARS-CoV-2 Infection of Pluripotent Stem Cell-derived Human Lung Alveolar Type 2 Cells Elicits a Rapid Epithelial-Intrinsic Inflammatory Response

molecular biology more details view paper
  • Downloaded 2,427 times
  • Download rankings, all-time:
    • Site-wide: 7,894
    • In molecular biology: 182
  • Year to date:
    • Site-wide: 44,151
  • Since beginning of last month:
    • Site-wide: 27,264

Designing viral diagnostics with model-based optimization

genomics more details view paper
  • Downloaded 2,232 times
  • Download rankings, all-time:
    • Site-wide: 8,936
    • In genomics: 874
  • Year to date:
    • Site-wide: 3,896
  • Since beginning of last month:
    • Site-wide: 5,589

Cerebral Microvascular Injury in Severe COVID-19

neurology more details view paper
  • Downloaded 1,986 times
  • Download rankings, all-time:
    • Site-wide: 10,591
    • In neurology: 24
  • Year to date:
    • Site-wide: 17,007
  • Since beginning of last month:
    • Site-wide: 25,011

Capturing diverse microbial sequence with comprehensive and scalable probe design

genomics more details view paper
  • Downloaded 1,863 times
  • Download rankings, all-time:
    • Site-wide: 11,677
    • In genomics: 1,136
  • Year to date:
    • Site-wide: 47,757
  • Since beginning of last month:
    • Site-wide: 118,404

Genome-wide functional screen of 3'UTR variants uncovers causal variants for human disease and evolution

genetics more details view paper
  • Downloaded 1,785 times
  • Download rankings, all-time:
    • Site-wide: 12,410
    • In genetics: 513
  • Year to date:
    • Site-wide: 18,849
  • Since beginning of last month:
    • Site-wide: 13,649

Genome-wide regulatory model from MPRA data predicts functional regions, eQTLs, and GWAS hits

bioinformatics more details view paper
  • Downloaded 1,766 times
  • Download rankings, all-time:
    • Site-wide: 12,609
    • In bioinformatics: 1,378
  • Year to date:
    • Site-wide: 106,893
  • Since beginning of last month:
    • Site-wide: 100,271

Insights from complex trait fine-mapping across diverse populations

genetic and genomic medicine more details view paper
  • Downloaded 1,496 times
  • Download rankings, all-time:
    • Site-wide: 16,246
    • In genetic and genomic medicine: 83
  • Year to date:
    • Site-wide: 4,527
  • Since beginning of last month:
    • Site-wide: 6,269

Epidemiological and immunological features of obesity and SARS-CoV-2

epidemiology more details view paper
  • Downloaded 1,431 times
  • Download rankings, all-time:
    • Site-wide: 17,345
    • In epidemiology: 1,182
  • Year to date:
    • Site-wide: 15,777
  • Since beginning of last month:
    • Site-wide: 42,950

Single-cell profiling of Ebola virus infection in vivo reveals viral and host transcriptional dynamics

microbiology more details view paper
  • Downloaded 1,296 times
  • Download rankings, all-time:
    • Site-wide: 20,166
    • In microbiology: 1,170
  • Year to date:
    • Site-wide: 131,454
  • Since beginning of last month:
    • Site-wide: 128,370

Development of a qualitative real-time RT-PCR assay for the detection of SARS-CoV-2: A guide and case study in setting up an emergency-use, laboratory-developed molecular assay

pathology more details view paper
  • Downloaded 1,237 times
  • Download rankings, all-time:
    • Site-wide: 21,641
    • In pathology: 98
  • Year to date:
    • Site-wide: 13,535
  • Since beginning of last month:
    • Site-wide: 13,973

Machine-Learning prognostic models from the 2014-16 Ebola outbreak: data-harmonization challenges, validation strategies, and mHealth applications

bioinformatics more details view paper
  • Downloaded 1,217 times
  • Download rankings, all-time:
    • Site-wide: 22,212
    • In bioinformatics: 2,478
  • Year to date:
    • Site-wide: 56,172
  • Since beginning of last month:
    • Site-wide: 143,174

Fine-mapping the Favored Mutation in a Positive Selective Sweep

evolutionary biology more details view paper
  • Downloaded 1,206 times
  • Download rankings, all-time:
    • Site-wide: 22,531
    • In evolutionary biology: 795
  • Year to date:
    • Site-wide: 109,620
  • Since beginning of last month:
    • Site-wide: 81,143

Reporter assays for Ebola virus nucleoprotein oligomerization, virion-like particle budding, and minigenome activity reveal the importance of nucleoprotein amino acid position 111

microbiology more details view paper
  • Downloaded 980 times
  • Download rankings, all-time:
    • Site-wide: 30,772
    • In microbiology: 1,783
  • Year to date:
    • Site-wide: 153,073
  • Since beginning of last month:
    • Site-wide: 95,429

Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA

epidemiology more details view paper
  • Downloaded 951 times
  • Download rankings, all-time:
    • Site-wide: 32,182
    • In epidemiology: 1,774
  • Year to date:
    • Site-wide: 6,006
  • Since beginning of last month:
    • Site-wide: 3,123

Co-circulating mumps lineages at multiple geographic scales

genomics more details view paper
  • Downloaded 856 times
  • Download rankings, all-time:
    • Site-wide: 37,480
    • In genomics: 3,040
  • Year to date:
    • Site-wide: 120,741
  • Since beginning of last month:
    • Site-wide: 99,951

The Case for Altruism in Institutional Diagnostic Testing

epidemiology more details view paper
  • Downloaded 725 times
  • Download rankings, all-time:
    • Site-wide: 47,555
    • In epidemiology: 2,388
  • Year to date:
    • Site-wide: 75,032
  • Since beginning of last month:
    • Site-wide: 20,635

DNA spike-ins enable confident interpretation of SARS-CoV-2 genomic data from amplicon-based sequencing

molecular biology more details view paper
  • Downloaded 690 times
  • Download rankings, all-time:
    • Site-wide: 50,904
    • In molecular biology: 1,436
  • Year to date:
    • Site-wide: 24,309
  • Since beginning of last month:
    • Site-wide: 32,648

Real-time Metagenomic Analysis of Undiagnosed Fever Cases Unveils a Yellow Fever Outbreak in Edo State, Nigeria

genomics more details view paper
  • Downloaded 663 times
  • Download rankings, all-time:
    • Site-wide: 53,755
    • In genomics: 3,992
  • Year to date:
    • Site-wide: 117,612
  • Since beginning of last month:
    • Site-wide: 149,705

Cosi2 : An efficient simulator of exact and approximate coalescent with selection

genetics more details view paper
  • Downloaded 660 times
  • Download rankings, all-time:
    • Site-wide: 54,156
    • In genetics: 2,276
  • Year to date:
    • Site-wide: 115,610
  • Since beginning of last month:
    • Site-wide: 123,790

Enhanced virus detection and metagenomic sequencing in patients with meningitis and encephalitis

neuroscience more details view paper
  • Downloaded 232 times
  • Download rankings, all-time:
    • Site-wide: 139,927
    • In neuroscience: 20,842
  • Year to date:
    • Site-wide: 55,074
  • Since beginning of last month:
    • Site-wide: 78,230

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