Author: So Nakagawa

Downloads per author, site-wide

Preprints

SARS-CoV-2 Lambda variant exhibits higher infectivity and immune resistance

• Downloaded 52,306 times
• Download rankings, all-time:
  • Site-wide: 176
  • In microbiology: 14
• Year to date:
  • Site-wide: 2,023
• Since beginning of last month:
  • Site-wide: 8,282

Ineffective neutralization of the SARS-CoV-2 Mu variant by convalescent and vaccine sera

• Downloaded 31,423 times
• Download rankings, all-time:
  • Site-wide: 317
  • In microbiology: 30
• Year to date:
  • Site-wide: 5,691
• Since beginning of last month:
  • Site-wide: 19,415

SARS-CoV-2 spike P681R mutation, a hallmark of the Delta variant, enhances viral fusogenicity and pathogenicity

• Downloaded 12,229 times
• Download rankings, all-time:
  • Site-wide: 991
  • In microbiology: 95
• Year to date:
  • Site-wide: 3,576
• Since beginning of last month:
  • Site-wide: 14,167

SARS-CoV-2 ORF3b is a potent interferon antagonist whose activity is further increased by a naturally occurring elongation variant

• Downloaded 9,438 times
• Download rankings, all-time:
  • Site-wide: 1,356
  • In microbiology: 124
• Year to date:
  • Site-wide: 51,661
• Since beginning of last month:
  • Site-wide: 68,270

An emerging SARS-CoV-2 mutant evading cellular immunity and increasing viral infectivity

• Downloaded 7,376 times
• Download rankings, all-time:
  • Site-wide: 1,861
  • In microbiology: 158
• Year to date:
  • Site-wide: 12,734
• Since beginning of last month:
  • Site-wide: 17,091

A portable system for metagenomic analyses using nanopore-based sequencer and laptop computers can realize rapid on-site determination of bacterial compositions

• Downloaded 2,862 times
• Download rankings, all-time:
  • Site-wide: 6,984
  • In genomics: 628
• Year to date:
  • Site-wide: 114,207
• Since beginning of last month:
  • Site-wide: 161,008

Rapid bacterial identification by direct PCR amplification of 16S rRNA genes using the MinION™ nanopore sequencer

• Downloaded 2,326 times
• Download rankings, all-time:
  • Site-wide: 9,455
  • In microbiology: 537
• Year to date:
  • Site-wide: 76,763
• Since beginning of last month:
  • Site-wide: 72,523

Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution

• Downloaded 1,813 times
• Download rankings, all-time:
  • Site-wide: 13,700
  • In microbiology: 831
• Year to date:
  • Site-wide: 14,463
• Since beginning of last month:
  • Site-wide: 13,203

Sequence Compression Benchmark (SCB) database — a comprehensive evaluation of reference-free compressors for FASTA-formatted sequences

• Downloaded 1,481 times
• Download rankings, all-time:
  • Site-wide: 18,613
  • In bioinformatics: 2,008
• Year to date:
  • Site-wide: 55,493
• Since beginning of last month:
  • Site-wide: 67,135

Genomic diversity of SARS-CoV-2 can be accelerated by a mutation in the nsp14 gene

• Downloaded 1,359 times
• Download rankings, all-time:
  • Site-wide: 21,284
  • In microbiology: 1,329
• Year to date:
  • Site-wide: 18,941
• Since beginning of last month:
  • Site-wide: 8,706

Nanopore-based single molecule sequencing of the D4Z4 array responsible for facioscapulohumeral muscular dystrophy

• Downloaded 1,173 times
• Download rankings, all-time:
  • Site-wide: 26,726
  • In bioinformatics: 2,726
• Year to date:
  • Site-wide: 153,820
• Since beginning of last month:
  • Site-wide: 173,525

SARS-CoV-2 spike S375F mutation characterizes the Omicron BA.1 variant

• Downloaded 747 times
• Download rankings, all-time:
  • Site-wide: 52,215
  • In microbiology: None
• Year to date:
  • Site-wide: 2,715
• Since beginning of last month:
  • Site-wide: 11,293

Comprehensive genomic analysis reveals dynamic evolution of endogenous retroviruses that code for retroviral-like protein domains

• Downloaded 727 times
• Download rankings, all-time:
  • Site-wide: 54,308
  • In genomics: 3,789
• Year to date:
  • Site-wide: 139,103
• Since beginning of last month:
  • Site-wide: 113,800

Alopecia areata susceptibility variant identified by MHC risk haplotype sequencing reproduces symptomatic patched hair loss in mice

• Downloaded 647 times
• Download rankings, all-time:
  • Site-wide: 63,745
  • In genomics: 4,324
• Year to date:
  • Site-wide: 114,068
• Since beginning of last month:
  • Site-wide: 104,119

MinION™, a portable long-read sequencer, enables rapid vaginal microbiota analysis in a clinical setting

• Downloaded 623 times
• Download rankings, all-time:
  • Site-wide: 67,018
  • In microbiology: 5,001
• Year to date:
  • Site-wide: 25,848
• Since beginning of last month:
  • Site-wide: 17,178

Nucleotide Archival Format (NAF) enables efficient lossless reference-free compression of DNA sequences

• Downloaded 525 times
• Download rankings, all-time:
  • Site-wide: 82,788
  • In bioinformatics: 7,136
• Year to date:
  • Site-wide: 128,479
• Since beginning of last month:
  • Site-wide: 86,292

NeoRdRp: A comprehensive dataset for identifying RNA-dependent RNA polymerase of various RNA viruses from metatranscriptomic data

• Downloaded 391 times
• Download rankings, all-time:
  • Site-wide: 112,671
  • In microbiology: 10,257
• Year to date:
  • Site-wide: 7,230
• Since beginning of last month:
  • Site-wide: 27,150

Nanopore direct RNA sequencing detects DUX4-activated repeats and isoforms in human muscle cells

• Downloaded 384 times
• Download rankings, all-time:
  • Site-wide: 114,370
  • In genomics: 6,315
• Year to date:
  • Site-wide: 151,036
• Since beginning of last month:
  • Site-wide: 167,796

Plasmid analysis of NDM metallo-β-lactamase-producing Enterobacterales isolated in Vietnam

• Downloaded 359 times
• Download rankings, all-time:
  • Site-wide: 121,340
  • In microbiology: 8,229
• Year to date:
  • Site-wide: 106,614
• Since beginning of last month:
  • Site-wide: 76,624

Efficient differentiation and polarization of primary cultured neurons on poly(lactic acid) scaffolds with microgrooved structures

• Downloaded 318 times
• Download rankings, all-time:
  • Site-wide: 132,934
  • In molecular biology: 3,727
• Year to date:
  • Site-wide: 153,831
• Since beginning of last month:
  • Site-wide: 131,667

An ancient retroviral RNA element hidden in mammalian genomes and its involvement in co-opted retroviral gene regulation

• Downloaded 282 times
• Download rankings, all-time:
  • Site-wide: 143,804
  • In molecular biology: 4,094
• Year to date:
  • Site-wide: 105,254
• Since beginning of last month:
  • Site-wide: 73,687

Uhrf1 governs the proliferation and differentiation of muscle satellite cells

• Downloaded 273 times
• Download rankings, all-time:
  • Site-wide: 146,486
  • In molecular biology: 4,115
• Year to date:
  • Site-wide: 118,356
• Since beginning of last month:
  • Site-wide: 123,242

Monotreme-specific conserved proteins derived from retroviral reverse transcriptase

• Downloaded 254 times
• Download rankings, all-time:
  • Site-wide: 151,903
  • In genomics: 8,331
• Year to date:
  • Site-wide: 13,896
• Since beginning of last month:
  • Site-wide: 53,675

Activity-specificity trade-off gives PI5P4Kβ a nucleotide preference to function as a GTP-sensing kinase.

• Downloaded 253 times
• Download rankings, all-time:
  • Site-wide: 152,436
  • In biochemistry: 4,458
• Year to date:
  • Site-wide: 104,123
• Since beginning of last month:
  • Site-wide: 103,077

Expression of ERV3-1 in Leukocytes of Acute Myelogenous Leukemia Patients

• Downloaded 217 times
• Download rankings, all-time:
  • Site-wide: 162,539
  • In molecular biology: 4,570
• Year to date:
  • Site-wide: 161,657
• Since beginning of last month:
  • Site-wide: 139,188

Rapid profiling of drug-resistant bacteria using DNA-binding dyes and a nanopore-based DNA sequencer

• Downloaded 147 times
• Download rankings, all-time:
  • Site-wide: 178,765
  • In microbiology: 12,734
• Year to date:
  • Site-wide: 171,171
• Since beginning of last month:
  • Site-wide: 137,999