Author: So Nakagawa

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Preprints

SARS-CoV-2 ORF3b is a potent interferon antagonist whose activity is further increased by a naturally occurring elongation variant

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An emerging SARS-CoV-2 mutant evading cellular immunity and increasing viral infectivity

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SARS-CoV-2 spike P681R mutation, a hallmark of the Delta variant, enhances viral fusogenicity and pathogenicity

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A portable system for metagenomic analyses using nanopore-based sequencer and laptop computers can realize rapid on-site determination of bacterial compositions

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Rapid bacterial identification by direct PCR amplification of 16S rRNA genes using the MinION™ nanopore sequencer

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Sequence Compression Benchmark (SCB) database — a comprehensive evaluation of reference-free compressors for FASTA-formatted sequences

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Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution

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Nanopore-based single molecule sequencing of the D4Z4 array responsible for facioscapulohumeral muscular dystrophy

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Genomic diversity of SARS-CoV-2 can be accelerated by a mutation in the nsp14 gene

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Comprehensive genomic analysis reveals dynamic evolution of endogenous retroviruses that code for retroviral-like protein domains

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Alopecia areata susceptibility variant identified by MHC risk haplotype sequencing reproduces symptomatic patched hair loss in mice

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Nucleotide Archival Format (NAF) enables efficient lossless reference-free compression of DNA sequences

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MinION™, a portable long-read sequencer, enables rapid vaginal microbiota analysis in a clinical setting

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Nanopore direct RNA sequencing detects DUX4-activated repeats and isoforms in human muscle cells

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Plasmid analysis of NDM metallo-β-lactamase-producing Enterobacterales isolated in Vietnam

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Efficient differentiation and polarization of primary cultured neurons on poly(lactic acid) scaffolds with microgrooved structures

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Activity-specificity trade-off gives PI5P4Kβ a nucleotide preference to function as a GTP-sensing kinase.

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An ancient retroviral RNA element hidden in mammalian genomes and its involvement in co-opted retroviral gene regulation

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Expression of ERV3-1 in Leukocytes of Acute Myelogenous Leukemia Patients

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Uhrf1 governs the proliferation and differentiation of muscle satellite cells

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Rapid profiling of drug-resistant bacteria using DNA-binding dyes and a nanopore-based DNA sequencer

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