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Author: So Nakagawa

Rankings

  • All-time downloads: 129,933 (rank: 1,264 )
  • Categories:
    • biochemistry: 225 (rank: 27,436 (tie) )
    • bioinformatics: 3,089 (rank: 5,734 (tie) )
    • genomics: 4,632 (rank: 6,352 (tie) )
    • microbiology: 117,722 (rank: 121 )
    • molecular biology: 1,010 (rank: 8,192 (tie) )

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Preprints

SARS-CoV-2 Lambda variant exhibits higher infectivity and immune resistance

microbiology more details view paper
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    • Site-wide: 176
    • In microbiology: 14
  • Year to date:
    • Site-wide: 2,023
  • Since beginning of last month:
    • Site-wide: 8,282

Ineffective neutralization of the SARS-CoV-2 Mu variant by convalescent and vaccine sera

microbiology more details view paper
  • Downloaded 31,423 times
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    • Site-wide: 317
    • In microbiology: 30
  • Year to date:
    • Site-wide: 5,691
  • Since beginning of last month:
    • Site-wide: 19,415

SARS-CoV-2 spike P681R mutation, a hallmark of the Delta variant, enhances viral fusogenicity and pathogenicity

microbiology more details view paper
  • Downloaded 12,229 times
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    • Site-wide: 991
    • In microbiology: 95
  • Year to date:
    • Site-wide: 3,576
  • Since beginning of last month:
    • Site-wide: 14,167

SARS-CoV-2 ORF3b is a potent interferon antagonist whose activity is further increased by a naturally occurring elongation variant

microbiology more details view paper
  • Downloaded 9,438 times
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    • Site-wide: 1,356
    • In microbiology: 124
  • Year to date:
    • Site-wide: 51,661
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    • Site-wide: 68,270

An emerging SARS-CoV-2 mutant evading cellular immunity and increasing viral infectivity

microbiology more details view paper
  • Downloaded 7,376 times
  • Download rankings, all-time:
    • Site-wide: 1,861
    • In microbiology: 158
  • Year to date:
    • Site-wide: 12,734
  • Since beginning of last month:
    • Site-wide: 17,091

A portable system for metagenomic analyses using nanopore-based sequencer and laptop computers can realize rapid on-site determination of bacterial compositions

genomics more details view paper
  • Downloaded 2,862 times
  • Download rankings, all-time:
    • Site-wide: 6,984
    • In genomics: 628
  • Year to date:
    • Site-wide: 114,207
  • Since beginning of last month:
    • Site-wide: 161,008

Rapid bacterial identification by direct PCR amplification of 16S rRNA genes using the MinION™ nanopore sequencer

microbiology more details view paper
  • Downloaded 2,326 times
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    • Site-wide: 9,455
    • In microbiology: 537
  • Year to date:
    • Site-wide: 76,763
  • Since beginning of last month:
    • Site-wide: 72,523

Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution

microbiology more details view paper
  • Downloaded 1,813 times
  • Download rankings, all-time:
    • Site-wide: 13,700
    • In microbiology: 831
  • Year to date:
    • Site-wide: 14,463
  • Since beginning of last month:
    • Site-wide: 13,203

Sequence Compression Benchmark (SCB) database — a comprehensive evaluation of reference-free compressors for FASTA-formatted sequences

bioinformatics more details view paper
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    • Site-wide: 18,613
    • In bioinformatics: 2,008
  • Year to date:
    • Site-wide: 55,493
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    • Site-wide: 67,135

Genomic diversity of SARS-CoV-2 can be accelerated by a mutation in the nsp14 gene

microbiology more details view paper
  • Downloaded 1,359 times
  • Download rankings, all-time:
    • Site-wide: 21,284
    • In microbiology: 1,329
  • Year to date:
    • Site-wide: 18,941
  • Since beginning of last month:
    • Site-wide: 8,706

Nanopore-based single molecule sequencing of the D4Z4 array responsible for facioscapulohumeral muscular dystrophy

bioinformatics more details view paper
  • Downloaded 1,173 times
  • Download rankings, all-time:
    • Site-wide: 26,726
    • In bioinformatics: 2,726
  • Year to date:
    • Site-wide: 153,820
  • Since beginning of last month:
    • Site-wide: 173,525

SARS-CoV-2 spike S375F mutation characterizes the Omicron BA.1 variant

microbiology more details view paper
  • Downloaded 747 times
  • Download rankings, all-time:
    • Site-wide: 52,215
    • In microbiology: None
  • Year to date:
    • Site-wide: 2,715
  • Since beginning of last month:
    • Site-wide: 11,293

Comprehensive genomic analysis reveals dynamic evolution of endogenous retroviruses that code for retroviral-like protein domains

genomics more details view paper
  • Downloaded 727 times
  • Download rankings, all-time:
    • Site-wide: 54,308
    • In genomics: 3,789
  • Year to date:
    • Site-wide: 139,103
  • Since beginning of last month:
    • Site-wide: 113,800

Alopecia areata susceptibility variant identified by MHC risk haplotype sequencing reproduces symptomatic patched hair loss in mice

genomics more details view paper
  • Downloaded 647 times
  • Download rankings, all-time:
    • Site-wide: 63,745
    • In genomics: 4,324
  • Year to date:
    • Site-wide: 114,068
  • Since beginning of last month:
    • Site-wide: 104,119

MinION™, a portable long-read sequencer, enables rapid vaginal microbiota analysis in a clinical setting

microbiology more details view paper
  • Downloaded 623 times
  • Download rankings, all-time:
    • Site-wide: 67,018
    • In microbiology: 5,001
  • Year to date:
    • Site-wide: 25,848
  • Since beginning of last month:
    • Site-wide: 17,178

Nucleotide Archival Format (NAF) enables efficient lossless reference-free compression of DNA sequences

bioinformatics more details view paper
  • Downloaded 525 times
  • Download rankings, all-time:
    • Site-wide: 82,788
    • In bioinformatics: 7,136
  • Year to date:
    • Site-wide: 128,479
  • Since beginning of last month:
    • Site-wide: 86,292

NeoRdRp: A comprehensive dataset for identifying RNA-dependent RNA polymerase of various RNA viruses from metatranscriptomic data

microbiology more details view paper
  • Downloaded 391 times
  • Download rankings, all-time:
    • Site-wide: 112,671
    • In microbiology: 10,257
  • Year to date:
    • Site-wide: 7,230
  • Since beginning of last month:
    • Site-wide: 27,150

Nanopore direct RNA sequencing detects DUX4-activated repeats and isoforms in human muscle cells

genomics more details view paper
  • Downloaded 384 times
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    • Site-wide: 114,370
    • In genomics: 6,315
  • Year to date:
    • Site-wide: 151,036
  • Since beginning of last month:
    • Site-wide: 167,796

Plasmid analysis of NDM metallo-β-lactamase-producing Enterobacterales isolated in Vietnam

microbiology more details view paper
  • Downloaded 359 times
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    • Site-wide: 121,340
    • In microbiology: 8,229
  • Year to date:
    • Site-wide: 106,614
  • Since beginning of last month:
    • Site-wide: 76,624

Efficient differentiation and polarization of primary cultured neurons on poly(lactic acid) scaffolds with microgrooved structures

molecular biology more details view paper
  • Downloaded 318 times
  • Download rankings, all-time:
    • Site-wide: 132,934
    • In molecular biology: 3,727
  • Year to date:
    • Site-wide: 153,831
  • Since beginning of last month:
    • Site-wide: 131,667

An ancient retroviral RNA element hidden in mammalian genomes and its involvement in co-opted retroviral gene regulation

molecular biology more details view paper
  • Downloaded 282 times
  • Download rankings, all-time:
    • Site-wide: 143,804
    • In molecular biology: 4,094
  • Year to date:
    • Site-wide: 105,254
  • Since beginning of last month:
    • Site-wide: 73,687

Uhrf1 governs the proliferation and differentiation of muscle satellite cells

molecular biology more details view paper
  • Downloaded 273 times
  • Download rankings, all-time:
    • Site-wide: 146,486
    • In molecular biology: 4,115
  • Year to date:
    • Site-wide: 118,356
  • Since beginning of last month:
    • Site-wide: 123,242

Monotreme-specific conserved proteins derived from retroviral reverse transcriptase

genomics more details view paper
  • Downloaded 254 times
  • Download rankings, all-time:
    • Site-wide: 151,903
    • In genomics: 8,331
  • Year to date:
    • Site-wide: 13,896
  • Since beginning of last month:
    • Site-wide: 53,675

Activity-specificity trade-off gives PI5P4Kβ a nucleotide preference to function as a GTP-sensing kinase.

biochemistry more details view paper
  • Downloaded 253 times
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    • Site-wide: 152,436
    • In biochemistry: 4,458
  • Year to date:
    • Site-wide: 104,123
  • Since beginning of last month:
    • Site-wide: 103,077

Expression of ERV3-1 in Leukocytes of Acute Myelogenous Leukemia Patients

molecular biology more details view paper
  • Downloaded 217 times
  • Download rankings, all-time:
    • Site-wide: 162,539
    • In molecular biology: 4,570
  • Year to date:
    • Site-wide: 161,657
  • Since beginning of last month:
    • Site-wide: 139,188

Rapid profiling of drug-resistant bacteria using DNA-binding dyes and a nanopore-based DNA sequencer

microbiology more details view paper
  • Downloaded 147 times
  • Download rankings, all-time:
    • Site-wide: 178,765
    • In microbiology: 12,734
  • Year to date:
    • Site-wide: 171,171
  • Since beginning of last month:
    • Site-wide: 137,999

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