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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 60,239 bioRxiv papers from 267,831 authors.

Author: Louise M Judd

Rankings

  • All-time downloads: 20,252 (rank: 1,161 out of 267,831)
  • Categories:
    • bioinformatics: 13,634 (rank: 147 out of 23,908)
    • genetics: 617 (rank: 13,031 (tie) out of 27,094)
    • genomics: 1,422 (rank: 8,871 (tie) out of 31,259)
    • microbiology: 4,579 (rank: 158 out of 27,508)

Downloads per author, site-wide

Preprints

Performance of neural network basecalling tools for Oxford Nanopore sequencing

bioinformatics more details view paper
  • Downloaded 6,933 times
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    • Site-wide: 205 out of 60,239
    • In bioinformatics: 34 out of 6,078
  • Year to date:
    • Site-wide: 35 out of 60,239
  • Since beginning of last month:
    • Site-wide: 87 out of 60,239

Completing bacterial genome assemblies with multiplex MinION sequencing

bioinformatics more details view paper
  • Downloaded 3,191 times
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    • Site-wide: 926 out of 60,239
    • In bioinformatics: 185 out of 6,078
  • Year to date:
    • Site-wide: 11,998 out of 60,239
  • Since beginning of last month:
    • Site-wide: 32,811 out of 60,239

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks

bioinformatics more details view paper
  • Downloaded 2,017 times
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    • Site-wide: 2,127 out of 60,239
    • In bioinformatics: 444 out of 6,078
  • Year to date:
    • Site-wide: 1,855 out of 60,239
  • Since beginning of last month:
    • Site-wide: 2,744 out of 60,239

Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations

microbiology more details view paper
  • Downloaded 1,719 times
  • Download rankings, all-time:
    • Site-wide: 2,802 out of 60,239
    • In microbiology: 74 out of 4,826
  • Year to date:
    • Site-wide: 16,894 out of 60,239
  • Since beginning of last month:
    • Site-wide: 23,124 out of 60,239

Unicycler: resolving bacterial genome assemblies from short and long sequencing reads

bioinformatics more details view paper
  • Downloaded 1,493 times
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    • Site-wide: 3,540 out of 60,239
    • In bioinformatics: 712 out of 6,078
  • Year to date:
    • Site-wide: 16,037 out of 60,239
  • Since beginning of last month:
    • Site-wide: 9,408 out of 60,239

Population genomics of hypervirulent Klebsiella pneumoniae clonal group 23 reveals early emergence and rapid global dissemination

genomics more details view paper
  • Downloaded 682 times
  • Download rankings, all-time:
    • Site-wide: 12,203 out of 60,239
    • In genomics: 1,701 out of 4,181
  • Year to date:
    • Site-wide: 39,224 out of 60,239
  • Since beginning of last month:
    • Site-wide: 40,421 out of 60,239

Antimicrobial resistant Klebsiella pneumoniae carriage and infection in specialized geriatric care wards linked to acquisition in the referring hospital

microbiology more details view paper
  • Downloaded 662 times
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    • Site-wide: 12,747 out of 60,239
    • In microbiology: 604 out of 4,826
  • Year to date:
    • Site-wide: 42,396 out of 60,239
  • Since beginning of last month:
    • Site-wide: 55,174 out of 60,239

Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae

microbiology more details view paper
  • Downloaded 637 times
  • Download rankings, all-time:
    • Site-wide: 13,417 out of 60,239
    • In microbiology: 656 out of 4,826
  • Year to date:
    • Site-wide: 10,201 out of 60,239
  • Since beginning of last month:
    • Site-wide: 36,890 out of 60,239

Dynamics of the upper airway microbiome in the pathogenesis of asthma-associated persistent wheeze in preschool children

genetics more details view paper
  • Downloaded 617 times
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    • Site-wide: 13,979 out of 60,239
    • In genetics: 989 out of 3,435
  • Year to date:
    • Site-wide: 37,768 out of 60,239
  • Since beginning of last month:
    • Site-wide: 53,688 out of 60,239

Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia.

microbiology more details view paper
  • Downloaded 603 times
  • Download rankings, all-time:
    • Site-wide: 14,454 out of 60,239
    • In microbiology: 723 out of 4,826
  • Year to date:
    • Site-wide: 3,166 out of 60,239
  • Since beginning of last month:
    • Site-wide: 3,947 out of 60,239

Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307

microbiology more details view paper
  • Downloaded 443 times
  • Download rankings, all-time:
    • Site-wide: 21,336 out of 60,239
    • In microbiology: 1,164 out of 4,826
  • Year to date:
    • Site-wide: 28,388 out of 60,239
  • Since beginning of last month:
    • Site-wide: 39,306 out of 60,239

Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae

genomics more details view paper
  • Downloaded 406 times
  • Download rankings, all-time:
    • Site-wide: 23,477 out of 60,239
    • In genomics: 2,557 out of 4,181
  • Year to date:
    • Site-wide: 32,907 out of 60,239
  • Since beginning of last month:
    • Site-wide: 28,569 out of 60,239

Yersiniabactin, Colibactin and Wider Resistome Contribute to Enhanced Virulence and Persistence of KPC-2-Producing Klebsiella pneumoniae CG258 in South America

microbiology more details view paper
  • Downloaded 347 times
  • Download rankings, all-time:
    • Site-wide: 27,604 out of 60,239
    • In microbiology: 1,640 out of 4,826
  • Year to date:
    • Site-wide: 17,043 out of 60,239
  • Since beginning of last month:
    • Site-wide: 17,414 out of 60,239

Convergence of virulence and multidrug resistance in a single plasmid vector in multidrug-resistant Klebsiella pneumoniae ST15

genomics more details view paper
  • Downloaded 334 times
  • Download rankings, all-time:
    • Site-wide: 28,667 out of 60,239
    • In genomics: 2,867 out of 4,181
  • Year to date:
    • Site-wide: 23,915 out of 60,239
  • Since beginning of last month:
    • Site-wide: 47,454 out of 60,239

Insights from the revised complete genome sequences of Acinetobacter baumannii strains AB307-0294 and ACICU belonging to global clone 1 and 2

microbiology more details view paper
  • Downloaded 168 times
  • Download rankings, all-time:
    • Site-wide: 46,320 out of 60,239
    • In microbiology: 3,296 out of 4,826
  • Year to date:
    • Site-wide: 22,008 out of 60,239
  • Since beginning of last month:
    • Site-wide: 19,328 out of 60,239

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