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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 52,976 bioRxiv papers from 245,355 authors.

Author: Louise M Judd

Rankings

  • All-time downloads: 17,141 (rank: 1,294 out of 245,355)
  • Categories:
    • bioinformatics: 11,167 (rank: 194 (tie) out of 21,701)
    • genetics: 587 (rank: 11,376 (tie) out of 23,731)
    • genomics: 1,327 (rank: 8,725 (tie) out of 28,326)
    • microbiology: 4,060 (rank: 138 out of 23,783)

Downloads per author, site-wide

Preprints

Performance of neural network basecalling tools for Oxford Nanopore sequencing

bioinformatics more details view paper
  • Downloaded 4,892 times
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    • Site-wide: 345 out of 52,976
    • In bioinformatics: 70 out of 5,530
  • Year to date:
    • Site-wide: 34 out of 52,976
  • Since beginning of last month:
    • Site-wide: 24 out of 52,976

Completing bacterial genome assemblies with multiplex MinION sequencing

bioinformatics more details view paper
  • Downloaded 3,135 times
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    • Site-wide: 828 out of 52,976
    • In bioinformatics: 168 out of 5,530
  • Year to date:
    • Site-wide: 8,916 out of 52,976
  • Since beginning of last month:
    • Site-wide: 11,089 out of 52,976

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks

bioinformatics more details view paper
  • Downloaded 1,745 times
  • Download rankings, all-time:
    • Site-wide: 2,319 out of 52,976
    • In bioinformatics: 482 out of 5,530
  • Year to date:
    • Site-wide: 1,944 out of 52,976
  • Since beginning of last month:
    • Site-wide: 3,799 out of 52,976

Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations

microbiology more details view paper
  • Downloaded 1,658 times
  • Download rankings, all-time:
    • Site-wide: 2,544 out of 52,976
    • In microbiology: 61 out of 4,153
  • Year to date:
    • Site-wide: 14,403 out of 52,976
  • Since beginning of last month:
    • Site-wide: 14,367 out of 52,976

Unicycler: resolving bacterial genome assemblies from short and long sequencing reads

bioinformatics more details view paper
  • Downloaded 1,395 times
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    • Site-wide: 3,366 out of 52,976
    • In bioinformatics: 676 out of 5,530
  • Year to date:
    • Site-wide: 18,342 out of 52,976
  • Since beginning of last month:
    • Site-wide: 13,931 out of 52,976

Population genomics of hypervirulent Klebsiella pneumoniae clonal group 23 reveals early emergence and rapid global dissemination

genomics more details view paper
  • Downloaded 656 times
  • Download rankings, all-time:
    • Site-wide: 10,823 out of 52,976
    • In genomics: 1,547 out of 3,779
  • Year to date:
    • Site-wide: 30,995 out of 52,976
  • Since beginning of last month:
    • Site-wide: 25,090 out of 52,976

Antimicrobial resistant Klebsiella pneumoniae carriage and infection in specialized geriatric care wards linked to acquisition in the referring hospital

microbiology more details view paper
  • Downloaded 641 times
  • Download rankings, all-time:
    • Site-wide: 11,203 out of 52,976
    • In microbiology: 524 out of 4,153
  • Year to date:
    • Site-wide: 32,378 out of 52,976
  • Since beginning of last month:
    • Site-wide: 33,643 out of 52,976

Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae

microbiology more details view paper
  • Downloaded 604 times
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    • Site-wide: 12,106 out of 52,976
    • In microbiology: 569 out of 4,153
  • Year to date:
    • Site-wide: 6,359 out of 52,976
  • Since beginning of last month:
    • Site-wide: 20,990 out of 52,976

Dynamics of the upper airway microbiome in the pathogenesis of asthma-associated persistent wheeze in preschool children

genetics more details view paper
  • Downloaded 587 times
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    • Site-wide: 12,562 out of 52,976
    • In genetics: 911 out of 3,086
  • Year to date:
    • Site-wide: 30,895 out of 52,976
  • Since beginning of last month:
    • Site-wide: 39,920 out of 52,976

Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia.

microbiology more details view paper
  • Downloaded 384 times
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    • Site-wide: 20,751 out of 52,976
    • In microbiology: 1,124 out of 4,153
  • Year to date:
    • Site-wide: 3,520 out of 52,976
  • Since beginning of last month:
    • Site-wide: 7,502 out of 52,976

Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307

microbiology more details view paper
  • Downloaded 378 times
  • Download rankings, all-time:
    • Site-wide: 21,068 out of 52,976
    • In microbiology: 1,147 out of 4,153
  • Year to date:
    • Site-wide: 30,203 out of 52,976
  • Since beginning of last month:
    • Site-wide: 25,839 out of 52,976

Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae

genomics more details view paper
  • Downloaded 366 times
  • Download rankings, all-time:
    • Site-wide: 21,798 out of 52,976
    • In genomics: 2,409 out of 3,779
  • Year to date:
    • Site-wide: 28,598 out of 52,976
  • Since beginning of last month:
    • Site-wide: 38,107 out of 52,976

Convergence of virulence and multidrug resistance in a single plasmid vector in multidrug-resistant Klebsiella pneumoniae ST15

genomics more details view paper
  • Downloaded 305 times
  • Download rankings, all-time:
    • Site-wide: 25,879 out of 52,976
    • In genomics: 2,654 out of 3,779
  • Year to date:
    • Site-wide: 17,134 out of 52,976
  • Since beginning of last month:
    • Site-wide: 27,967 out of 52,976

Yersiniabactin, Colibactin and Wider Resistome Contribute to Enhanced Virulence and Persistence of KPC-2-Producing Klebsiella pneumoniae CG258 in South America

microbiology more details view paper
  • Downloaded 291 times
  • Download rankings, all-time:
    • Site-wide: 26,990 out of 52,976
    • In microbiology: 1,612 out of 4,153
  • Year to date:
    • Site-wide: 13,938 out of 52,976
  • Since beginning of last month:
    • Site-wide: 14,947 out of 52,976

Insights from the revised complete genome sequences of Acinetobacter baumannii strains AB307-0294 and ACICU belonging to global clone 1 and 2

microbiology more details view paper
  • Downloaded 104 times
  • Download rankings, all-time:
    • Site-wide: 46,738 out of 52,976
    • In microbiology: 3,418 out of 4,153
  • Year to date:
    • Site-wide: 21,252 out of 52,976
  • Since beginning of last month:
    • Site-wide: 4,086 out of 52,976

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