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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 60,239 bioRxiv papers from 267,831 authors.

Author: Ryan R Wick

Rankings

  • All-time downloads: 24,441 (rank: 808 out of 267,831)
  • Categories:
    • bioinformatics: 15,134 (rank: 121 out of 23,908)
    • evolutionary biology: 149 (rank: 13,179 (tie) out of 14,804)
    • genomics: 2,749 (rank: 4,844 (tie) out of 31,259)
    • microbiology: 6,409 (rank: 92 out of 27,508)

Downloads per author, site-wide

Preprints

Performance of neural network basecalling tools for Oxford Nanopore sequencing

bioinformatics more details view paper
  • Downloaded 6,933 times
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    • Site-wide: 205 out of 60,239
    • In bioinformatics: 34 out of 6,078
  • Year to date:
    • Site-wide: 35 out of 60,239
  • Since beginning of last month:
    • Site-wide: 87 out of 60,239

Completing bacterial genome assemblies with multiplex MinION sequencing

bioinformatics more details view paper
  • Downloaded 3,191 times
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    • Site-wide: 926 out of 60,239
    • In bioinformatics: 185 out of 6,078
  • Year to date:
    • Site-wide: 11,998 out of 60,239
  • Since beginning of last month:
    • Site-wide: 32,811 out of 60,239

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks

bioinformatics more details view paper
  • Downloaded 2,017 times
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    • Site-wide: 2,127 out of 60,239
    • In bioinformatics: 444 out of 6,078
  • Year to date:
    • Site-wide: 1,855 out of 60,239
  • Since beginning of last month:
    • Site-wide: 2,744 out of 60,239

Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations

microbiology more details view paper
  • Downloaded 1,719 times
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    • Site-wide: 2,802 out of 60,239
    • In microbiology: 74 out of 4,826
  • Year to date:
    • Site-wide: 16,894 out of 60,239
  • Since beginning of last month:
    • Site-wide: 23,124 out of 60,239

Unicycler: resolving bacterial genome assemblies from short and long sequencing reads

bioinformatics more details view paper
  • Downloaded 1,493 times
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    • Site-wide: 3,540 out of 60,239
    • In bioinformatics: 712 out of 6,078
  • Year to date:
    • Site-wide: 16,037 out of 60,239
  • Since beginning of last month:
    • Site-wide: 9,408 out of 60,239

Inducible colistin resistance via a disrupted plasmid-borne mcr-1 gene in a 2008 Vietnamese Shigella sonnei isolate

microbiology more details view paper
  • Downloaded 1,397 times
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    • Site-wide: 3,944 out of 60,239
    • In microbiology: 119 out of 4,826
  • Year to date:
    • Site-wide: 56,350 out of 60,239
  • Since beginning of last month:
    • Site-wide: 57,880 out of 60,239

Bandage: interactive visualisation of de novo genome assemblies

bioinformatics more details view paper
  • Downloaded 818 times
  • Download rankings, all-time:
    • Site-wide: 9,375 out of 60,239
    • In bioinformatics: 1,645 out of 6,078
  • Year to date:
    • Site-wide: 40,565 out of 60,239
  • Since beginning of last month:
    • Site-wide: 33,009 out of 60,239

Identification of Klebsiella capsule synthesis loci from whole genome data

genomics more details view paper
  • Downloaded 814 times
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    • Site-wide: 9,436 out of 60,239
    • In genomics: 1,424 out of 4,181
  • Year to date:
    • Site-wide: 25,126 out of 60,239
  • Since beginning of last month:
    • Site-wide: 30,194 out of 60,239

Gastrointestinal carriage is a major reservoir of K. pneumoniae infection in intensive care patients

microbiology more details view paper
  • Downloaded 695 times
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    • Site-wide: 11,878 out of 60,239
    • In microbiology: 544 out of 4,826
  • Year to date:
    • Site-wide: 16,301 out of 60,239
  • Since beginning of last month:
    • Site-wide: 4,362 out of 60,239

Correcting index databases improves metagenomic studies

bioinformatics more details view paper
  • Downloaded 682 times
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    • Site-wide: 12,206 out of 60,239
    • In bioinformatics: 2,023 out of 6,078
  • Year to date:
    • Site-wide: 2,532 out of 60,239
  • Since beginning of last month:
    • Site-wide: 622 out of 60,239

Population genomics of hypervirulent Klebsiella pneumoniae clonal group 23 reveals early emergence and rapid global dissemination

genomics more details view paper
  • Downloaded 682 times
  • Download rankings, all-time:
    • Site-wide: 12,203 out of 60,239
    • In genomics: 1,701 out of 4,181
  • Year to date:
    • Site-wide: 39,224 out of 60,239
  • Since beginning of last month:
    • Site-wide: 40,421 out of 60,239

Antimicrobial resistant Klebsiella pneumoniae carriage and infection in specialized geriatric care wards linked to acquisition in the referring hospital

microbiology more details view paper
  • Downloaded 662 times
  • Download rankings, all-time:
    • Site-wide: 12,747 out of 60,239
    • In microbiology: 604 out of 4,826
  • Year to date:
    • Site-wide: 42,396 out of 60,239
  • Since beginning of last month:
    • Site-wide: 55,174 out of 60,239

Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae

microbiology more details view paper
  • Downloaded 637 times
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    • Site-wide: 13,417 out of 60,239
    • In microbiology: 656 out of 4,826
  • Year to date:
    • Site-wide: 10,201 out of 60,239
  • Since beginning of last month:
    • Site-wide: 36,890 out of 60,239

Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection

genomics more details view paper
  • Downloaded 513 times
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    • Site-wide: 17,899 out of 60,239
    • In genomics: 2,171 out of 4,181
  • Year to date:
    • Site-wide: 37,222 out of 60,239
  • Since beginning of last month:
    • Site-wide: 41,731 out of 60,239

Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307

microbiology more details view paper
  • Downloaded 443 times
  • Download rankings, all-time:
    • Site-wide: 21,336 out of 60,239
    • In microbiology: 1,164 out of 4,826
  • Year to date:
    • Site-wide: 28,388 out of 60,239
  • Since beginning of last month:
    • Site-wide: 39,306 out of 60,239

Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae

genomics more details view paper
  • Downloaded 406 times
  • Download rankings, all-time:
    • Site-wide: 23,477 out of 60,239
    • In genomics: 2,557 out of 4,181
  • Year to date:
    • Site-wide: 32,907 out of 60,239
  • Since beginning of last month:
    • Site-wide: 28,569 out of 60,239

Yersiniabactin, Colibactin and Wider Resistome Contribute to Enhanced Virulence and Persistence of KPC-2-Producing Klebsiella pneumoniae CG258 in South America

microbiology more details view paper
  • Downloaded 347 times
  • Download rankings, all-time:
    • Site-wide: 27,604 out of 60,239
    • In microbiology: 1,640 out of 4,826
  • Year to date:
    • Site-wide: 17,043 out of 60,239
  • Since beginning of last month:
    • Site-wide: 17,414 out of 60,239

Kaptive Web: user-friendly capsule and lipopolysaccharide serotype prediction for Klebsiella genomes

microbiology more details view paper
  • Downloaded 341 times
  • Download rankings, all-time:
    • Site-wide: 28,086 out of 60,239
    • In microbiology: 1,685 out of 4,826
  • Year to date:
    • Site-wide: 30,449 out of 60,239
  • Since beginning of last month:
    • Site-wide: 28,096 out of 60,239

Convergence of virulence and multidrug resistance in a single plasmid vector in multidrug-resistant Klebsiella pneumoniae ST15

genomics more details view paper
  • Downloaded 334 times
  • Download rankings, all-time:
    • Site-wide: 28,667 out of 60,239
    • In genomics: 2,867 out of 4,181
  • Year to date:
    • Site-wide: 23,915 out of 60,239
  • Since beginning of last month:
    • Site-wide: 47,454 out of 60,239

Insights from the revised complete genome sequences of Acinetobacter baumannii strains AB307-0294 and ACICU belonging to global clone 1 and 2

microbiology more details view paper
  • Downloaded 168 times
  • Download rankings, all-time:
    • Site-wide: 46,320 out of 60,239
    • In microbiology: 3,296 out of 4,826
  • Year to date:
    • Site-wide: 22,008 out of 60,239
  • Since beginning of last month:
    • Site-wide: 19,328 out of 60,239

Diversity and evolution of surface polysaccharide synthesis loci in Enterobacteriales

evolutionary biology more details view paper
  • Downloaded 149 times
  • Download rankings, all-time:
    • Site-wide: 48,915 out of 60,239
    • In evolutionary biology: 3,522 out of 4,111
  • Year to date:
    • Site-wide: 25,389 out of 60,239
  • Since beginning of last month:
    • Site-wide: 14,389 out of 60,239

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