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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 52,976 bioRxiv papers from 245,355 authors.

Author: Ryan R Wick

Rankings

  • All-time downloads: 22,041 (rank: 824 out of 245,355)
  • Categories:
    • bioinformatics: 13,567 (rank: 127 out of 21,701)
    • genomics: 2,563 (rank: 4,712 out of 28,326)
    • microbiology: 5,911 (rank: 71 out of 23,783)

Downloads per author, site-wide

Preprints

Performance of neural network basecalling tools for Oxford Nanopore sequencing

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    • In bioinformatics: 70 out of 5,530
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Completing bacterial genome assemblies with multiplex MinION sequencing

bioinformatics more details view paper
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    • In bioinformatics: 168 out of 5,530
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Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks

bioinformatics more details view paper
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    • Site-wide: 3,799 out of 52,976

Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations

microbiology more details view paper
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    • Site-wide: 14,367 out of 52,976

ISMapper: Identifying insertion sequences in bacterial genomes from short read sequence data

bioinformatics more details view paper
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    • In bioinformatics: 539 out of 5,530
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    • Site-wide: 17,403 out of 52,976

Unicycler: resolving bacterial genome assemblies from short and long sequencing reads

bioinformatics more details view paper
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    • In bioinformatics: 676 out of 5,530
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Inducible colistin resistance via a disrupted plasmid-borne mcr-1 gene in a 2008 Vietnamese Shigella sonnei isolate

microbiology more details view paper
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Bandage: interactive visualisation of de novo genome assemblies

bioinformatics more details view paper
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    • In bioinformatics: 1,515 out of 5,530
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    • Site-wide: 34,433 out of 52,976

Identification of Klebsiella capsule synthesis loci from whole genome data

genomics more details view paper
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    • In genomics: 1,330 out of 3,779
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    • Site-wide: 17,672 out of 52,976

Population genomics of hypervirulent Klebsiella pneumoniae clonal group 23 reveals early emergence and rapid global dissemination

genomics more details view paper
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    • In genomics: 1,547 out of 3,779
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    • Site-wide: 25,090 out of 52,976

Antimicrobial resistant Klebsiella pneumoniae carriage and infection in specialized geriatric care wards linked to acquisition in the referring hospital

microbiology more details view paper
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    • In microbiology: 524 out of 4,153
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Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae

microbiology more details view paper
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    • Site-wide: 20,990 out of 52,976

Gastrointestinal carriage is a major reservoir of K. pneumoniae infection in intensive care patients

microbiology more details view paper
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    • In microbiology: 671 out of 4,153
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    • Site-wide: 29,146 out of 52,976

Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection

genomics more details view paper
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    • In genomics: 2,039 out of 3,779
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    • Site-wide: 30,248 out of 52,976

Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307

microbiology more details view paper
  • Downloaded 378 times
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    • In microbiology: 1,147 out of 4,153
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  • Since beginning of last month:
    • Site-wide: 25,839 out of 52,976

Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae

genomics more details view paper
  • Downloaded 366 times
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    • In genomics: 2,409 out of 3,779
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    • Site-wide: 38,107 out of 52,976

Kaptive Web: user-friendly capsule and lipopolysaccharide serotype prediction for Klebsiella genomes

microbiology more details view paper
  • Downloaded 309 times
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    • In microbiology: 1,489 out of 4,153
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    • Site-wide: 33,232 out of 52,976

Convergence of virulence and multidrug resistance in a single plasmid vector in multidrug-resistant Klebsiella pneumoniae ST15

genomics more details view paper
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    • In genomics: 2,654 out of 3,779
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  • Since beginning of last month:
    • Site-wide: 27,967 out of 52,976

Yersiniabactin, Colibactin and Wider Resistome Contribute to Enhanced Virulence and Persistence of KPC-2-Producing Klebsiella pneumoniae CG258 in South America

microbiology more details view paper
  • Downloaded 291 times
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    • In microbiology: 1,612 out of 4,153
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    • Site-wide: 13,938 out of 52,976
  • Since beginning of last month:
    • Site-wide: 14,947 out of 52,976

Insights from the revised complete genome sequences of Acinetobacter baumannii strains AB307-0294 and ACICU belonging to global clone 1 and 2

microbiology more details view paper
  • Downloaded 104 times
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    • Site-wide: 46,738 out of 52,976
    • In microbiology: 3,418 out of 4,153
  • Year to date:
    • Site-wide: 21,252 out of 52,976
  • Since beginning of last month:
    • Site-wide: 4,086 out of 52,976

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