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Author: Liam P. Shaw

Rankings

  • All-time downloads: 32,830 (rank: 7,681 )
  • Categories:
    • bioinformatics: 12,230 (rank: 797 )
    • ecology: 1,428 (rank: 3,391 (tie) )
    • evolutionary biology: 672 (rank: 13,533 (tie) )
    • genomics: 11,177 (rank: 2,045 )
    • microbiology: 6,216 (rank: 3,138 )

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Preprints

No evidence for increased transmissibility from recurrent mutations in SARS-CoV-2

genomics more details view paper
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    • Site-wide: 1,417
    • In genomics: 88
  • Year to date:
    • Site-wide: 16,491
  • Since beginning of last month:
    • Site-wide: 22,468

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

bioinformatics more details view paper
  • Downloaded 8,752 times
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    • Site-wide: 1,512
    • In bioinformatics: 75
  • Year to date:
    • Site-wide: 50,071
  • Since beginning of last month:
    • Site-wide: 118,954

Genomic diversity affects the accuracy of bacterial SNP calling pipelines

bioinformatics more details view paper
  • Downloaded 2,423 times
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    • Site-wide: 8,903
    • In bioinformatics: 892
  • Year to date:
    • Site-wide: 58,762
  • Since beginning of last month:
    • Site-wide: 66,452

Modelling microbiome recovery after antibiotics using a stability landscape framework

microbiology more details view paper
  • Downloaded 1,589 times
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    • Site-wide: 16,728
    • In microbiology: 902
  • Year to date:
    • Site-wide: 107,998
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    • Site-wide: 116,556

Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: An inter-laboratory study

microbiology more details view paper
  • Downloaded 1,544 times
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    • Site-wide: 17,494
    • In microbiology: 974
  • Year to date:
    • Site-wide: 115,679
  • Since beginning of last month:
    • Site-wide: 170,275

A phylogeny-based metric for estimating changes in transmissibility from recurrent mutations in SARS-CoV-2

genomics more details view paper
  • Downloaded 1,538 times
  • Download rankings, all-time:
    • Site-wide: 17,611
    • In genomics: 1,670
  • Year to date:
    • Site-wide: 22,526
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    • Site-wide: 41,371

The phylogenetic range of bacterial and viral pathogens of vertebrates

ecology more details view paper
  • Downloaded 1,475 times
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    • Site-wide: 18,737
    • In ecology: 254
  • Year to date:
    • Site-wide: 73,779
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    • Site-wide: 67,659

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

microbiology more details view paper
  • Downloaded 1,358 times
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    • Site-wide: 21,308
    • In microbiology: 1,149
  • Year to date:
    • Site-wide: 177,817
  • Since beginning of last month:
    • Site-wide: 172,895

Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae

microbiology more details view paper
  • Downloaded 873 times
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    • Site-wide: 41,547
    • In microbiology: 2,410
  • Year to date:
    • Site-wide: 93,292
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    • Site-wide: 98,463

Flanker: a tool for comparative genomics of gene flanking regions

bioinformatics more details view paper
  • Downloaded 865 times
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    • Site-wide: 42,160
    • In bioinformatics: 4,461
  • Year to date:
    • Site-wide: 47,996
  • Since beginning of last month:
    • Site-wide: 32,703

Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture

genomics more details view paper
  • Downloaded 753 times
  • Download rankings, all-time:
    • Site-wide: 51,711
    • In genomics: 3,679
  • Year to date:
    • Site-wide: 137,945
  • Since beginning of last month:
    • Site-wide: 86,198

Role of the mobilome in the global dissemination of the carbapenem resistance gene blaNDM

microbiology more details view paper
  • Downloaded 618 times
  • Download rankings, all-time:
    • Site-wide: 67,719
    • In microbiology: 4,092
  • Year to date:
    • Site-wide: 66,355
  • Since beginning of last month:
    • Site-wide: 88,650

Pre-existing chromosomal polymorphisms in pathogenic E. coli potentiate the evolution of antibiotic resistance by MCR-1 plasmid acquisition

evolutionary biology more details view paper
  • Downloaded 424 times
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    • Site-wide: 104,526
    • In evolutionary biology: 6,259
  • Year to date:
    • Site-wide: 6,389
  • Since beginning of last month:
    • Site-wide: 43,749

Hospital outbreak of carbapenem-resistant Enterobacteriales associated with an OXA-48 plasmid carried mostly by Escherichia coli ST399

evolutionary biology more details view paper
  • Downloaded 421 times
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    • Site-wide: 105,253
    • In evolutionary biology: 4,969
  • Year to date:
    • Site-wide: 79,722
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    • Site-wide: 111,814

Genomic network analysis of an environmental and livestock IncF plasmid population

bioinformatics more details view paper
  • Downloaded 395 times
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    • Site-wide: 111,656
    • In bioinformatics: 9,018
  • Year to date:
    • Site-wide: 127,763
  • Since beginning of last month:
    • Site-wide: 92,304

Children with cystic fibrosis are infected with multiple subpopulations of Mycobacterium abscessus with different antimicrobial resistance profiles

microbiology more details view paper
  • Downloaded 386 times
  • Download rankings, all-time:
    • Site-wide: 113,875
    • In microbiology: 7,150
  • Year to date:
    • Site-wide: 189,722
  • Since beginning of last month:
    • Site-wide: 184,776

Plasmid overlap and evolution between Enterobacterales isolates from bloodstream infections and non-human compartments

genomics more details view paper
  • Downloaded 263 times
  • Download rankings, all-time:
    • Site-wide: 149,259
    • In genomics: None
  • Year to date:
    • Site-wide: 13,227
  • Since beginning of last month:
    • Site-wide: 1,746

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