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Author: Liam P. Shaw

Rankings

  • All-time downloads: 28,095 (rank: 6,375 )
  • Categories:
    • bioinformatics: 11,510 (rank: 672 )
    • ecology: 1,328 (rank: 2,961 (tie) )
    • evolutionary biology: 268 (rank: 20,722 (tie) )
    • genomics: 9,284 (rank: 2,222 )
    • microbiology: 5,705 (rank: 2,610 )

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Preprints

No evidence for increased transmissibility from recurrent mutations in SARS-CoV-2

genomics more details view paper
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    • Site-wide: 1,112
    • In genomics: 90
  • Year to date:
    • Site-wide: 4,833
  • Since beginning of last month:
    • Site-wide: 7,348

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

bioinformatics more details view paper
  • Downloaded 8,458 times
  • Download rankings, all-time:
    • Site-wide: 1,139
    • In bioinformatics: 65
  • Year to date:
    • Site-wide: 25,295
  • Since beginning of last month:
    • Site-wide: 27,700

Genomic diversity affects the accuracy of bacterial SNP calling pipelines

bioinformatics more details view paper
  • Downloaded 2,210 times
  • Download rankings, all-time:
    • Site-wide: 7,390
    • In bioinformatics: 844
  • Year to date:
    • Site-wide: 25,289
  • Since beginning of last month:
    • Site-wide: 61,881

Modelling microbiome recovery after antibiotics using a stability landscape framework

microbiology more details view paper
  • Downloaded 1,508 times
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    • Site-wide: 12,892
    • In microbiology: 754
  • Year to date:
    • Site-wide: 90,079
  • Since beginning of last month:
    • Site-wide: 108,746

Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: An inter-laboratory study

microbiology more details view paper
  • Downloaded 1,405 times
  • Download rankings, all-time:
    • Site-wide: 14,407
    • In microbiology: 847
  • Year to date:
    • Site-wide: 75,139
  • Since beginning of last month:
    • Site-wide: 64,680

The phylogenetic range of bacterial and viral pathogens of vertebrates

ecology more details view paper
  • Downloaded 1,328 times
  • Download rankings, all-time:
    • Site-wide: 15,667
    • In ecology: 238
  • Year to date:
    • Site-wide: 37,617
  • Since beginning of last month:
    • Site-wide: 32,909

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

microbiology more details view paper
  • Downloaded 1,314 times
  • Download rankings, all-time:
    • Site-wide: 15,942
    • In microbiology: 928
  • Year to date:
    • Site-wide: 63,024
  • Since beginning of last month:
    • Site-wide: 61,815

Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae

microbiology more details view paper
  • Downloaded 773 times
  • Download rankings, all-time:
    • Site-wide: 34,278
    • In microbiology: 2,054
  • Year to date:
    • Site-wide: 35,490
  • Since beginning of last month:
    • Site-wide: 46,924

Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture

genomics more details view paper
  • Downloaded 689 times
  • Download rankings, all-time:
    • Site-wide: 40,105
    • In genomics: 3,292
  • Year to date:
    • Site-wide: 138,555
  • Since beginning of last month:
    • Site-wide: 138,312

Flanker: a tool for comparative genomics of gene flanking regions

bioinformatics more details view paper
  • Downloaded 524 times
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    • Site-wide: 56,519
    • In bioinformatics: 5,677
  • Year to date:
    • Site-wide: 7,139
  • Since beginning of last month:
    • Site-wide: 19,405

Children with cystic fibrosis are infected with multiple subpopulations of Mycobacterium abscessus with different antimicrobial resistance profiles

microbiology more details view paper
  • Downloaded 360 times
  • Download rankings, all-time:
    • Site-wide: 82,618
    • In microbiology: 5,689
  • Year to date:
    • Site-wide: 122,545
  • Since beginning of last month:
    • Site-wide: 138,168

Role of the mobilome in the global dissemination of the carbapenem resistance gene blaNDM

microbiology more details view paper
  • Downloaded 345 times
  • Download rankings, all-time:
    • Site-wide: 85,554
    • In microbiology: 5,952
  • Year to date:
    • Site-wide: 12,890
  • Since beginning of last month:
    • Site-wide: 25,076

Genomic network analysis of an environmental and livestock IncF plasmid population

bioinformatics more details view paper
  • Downloaded 318 times
  • Download rankings, all-time:
    • Site-wide: 91,290
    • In bioinformatics: 8,051
  • Year to date:
    • Site-wide: 96,310
  • Since beginning of last month:
    • Site-wide: 125,066

Hospital outbreak of carbapenem-resistant Enterobacteriales associated with an OXA-48 plasmid carried mostly by Escherichia coli ST399

evolutionary biology more details view paper
  • Downloaded 268 times
  • Download rankings, all-time:
    • Site-wide: 102,830
    • In evolutionary biology: 5,288
  • Year to date:
    • Site-wide: 83,128
  • Since beginning of last month:
    • Site-wide: 83,832

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