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Author: Liam P. Shaw

Rankings

  • All-time downloads: 28,989 (rank: 7,026 )
  • Categories:
    • bioinformatics: 11,877 (rank: 727 (tie) )
    • ecology: 1,378 (rank: 3,162 (tie) )
    • evolutionary biology: 313 (rank: 20,890 (tie) )
    • genomics: 9,471 (rank: 2,283 )
    • microbiology: 5,950 (rank: 2,785 )

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Preprints

A phylogeny-based metric for estimating changes in transmissibility from recurrent mutations in SARS-CoV-2

genomics more details view paper

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No evidence for increased transmissibility from recurrent mutations in SARS-CoV-2

genomics more details view paper
  • Downloaded 8,764 times
  • Download rankings, all-time:
    • Site-wide: 1,230
    • In genomics: 89
  • Year to date:
    • Site-wide: 5,731
  • Since beginning of last month:
    • Site-wide: 14,940

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

bioinformatics more details view paper
  • Downloaded 8,558 times
  • Download rankings, all-time:
    • Site-wide: 1,280
    • In bioinformatics: 69
  • Year to date:
    • Site-wide: 25,807
  • Since beginning of last month:
    • Site-wide: 22,932

Genomic diversity affects the accuracy of bacterial SNP calling pipelines

bioinformatics more details view paper
  • Downloaded 2,282 times
  • Download rankings, all-time:
    • Site-wide: 7,859
    • In bioinformatics: 866
  • Year to date:
    • Site-wide: 29,193
  • Since beginning of last month:
    • Site-wide: 62,086

Modelling microbiome recovery after antibiotics using a stability landscape framework

microbiology more details view paper
  • Downloaded 1,526 times
  • Download rankings, all-time:
    • Site-wide: 14,138
    • In microbiology: 820
  • Year to date:
    • Site-wide: 111,589
  • Since beginning of last month:
    • Site-wide: 148,658

Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: An inter-laboratory study

microbiology more details view paper
  • Downloaded 1,422 times
  • Download rankings, all-time:
    • Site-wide: 15,806
    • In microbiology: 927
  • Year to date:
    • Site-wide: 98,469
  • Since beginning of last month:
    • Site-wide: 130,609

The phylogenetic range of bacterial and viral pathogens of vertebrates

ecology more details view paper
  • Downloaded 1,378 times
  • Download rankings, all-time:
    • Site-wide: 16,584
    • In ecology: 243
  • Year to date:
    • Site-wide: 44,977
  • Since beginning of last month:
    • Site-wide: 75,969

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

microbiology more details view paper
  • Downloaded 1,333 times
  • Download rankings, all-time:
    • Site-wide: 17,438
    • In microbiology: 1,016
  • Year to date:
    • Site-wide: 83,632
  • Since beginning of last month:
    • Site-wide: 134,322

Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae

microbiology more details view paper
  • Downloaded 814 times
  • Download rankings, all-time:
    • Site-wide: 35,846
    • In microbiology: 2,143
  • Year to date:
    • Site-wide: 45,200
  • Since beginning of last month:
    • Site-wide: 104,881

Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture

genomics more details view paper
  • Downloaded 707 times
  • Download rankings, all-time:
    • Site-wide: 43,652
    • In genomics: 3,463
  • Year to date:
    • Site-wide: 148,091
  • Since beginning of last month:
    • Site-wide: 127,579

Flanker: a tool for comparative genomics of gene flanking regions

bioinformatics more details view paper
  • Downloaded 696 times
  • Download rankings, all-time:
    • Site-wide: 44,567
    • In bioinformatics: 4,677
  • Year to date:
    • Site-wide: 7,752
  • Since beginning of last month:
    • Site-wide: 12,766

Role of the mobilome in the global dissemination of the carbapenem resistance gene blaNDM

microbiology more details view paper
  • Downloaded 484 times
  • Download rankings, all-time:
    • Site-wide: 69,738
    • In microbiology: 4,581
  • Year to date:
    • Site-wide: 13,411
  • Since beginning of last month:
    • Site-wide: 10,384

Children with cystic fibrosis are infected with multiple subpopulations of Mycobacterium abscessus with different antimicrobial resistance profiles

microbiology more details view paper
  • Downloaded 371 times
  • Download rankings, all-time:
    • Site-wide: 90,873
    • In microbiology: 6,257
  • Year to date:
    • Site-wide: 145,512
  • Since beginning of last month:
    • Site-wide: 148,418

Genomic network analysis of an environmental and livestock IncF plasmid population

bioinformatics more details view paper
  • Downloaded 341 times
  • Download rankings, all-time:
    • Site-wide: 97,678
    • In bioinformatics: 8,471
  • Year to date:
    • Site-wide: 112,005
  • Since beginning of last month:
    • Site-wide: 104,437

Hospital outbreak of carbapenem-resistant Enterobacteriales associated with an OXA-48 plasmid carried mostly by Escherichia coli ST399

evolutionary biology more details view paper
  • Downloaded 313 times
  • Download rankings, all-time:
    • Site-wide: 104,461
    • In evolutionary biology: 5,237
  • Year to date:
    • Site-wide: 83,897
  • Since beginning of last month:
    • Site-wide: 41,828

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