Rxivist logo

Author: Michael C. Schatz

Rankings

  • All-time downloads: 170,217 (rank: 484 )
  • Categories:
    • bioinformatics: 107,327 (rank: 1 )
    • developmental biology: 516 (rank: 9,388 (tie) )
    • evolutionary biology: 979 (rank: 7,219 (tie) )
    • genomics: 58,530 (rank: 143 )
    • infectious diseases: 2,246 (rank: 14,263 (tie) )
    • microbiology: 231 (rank: 48,119 (tie) )
    • molecular biology: 388 (rank: 16,287 (tie) )

Downloads per author, site-wide

Preprints

The genetic and epigenetic landscape of the Arabidopsis centromeres

genomics more details view paper

No download data for this paper yet.

Third-generation sequencing and the future of genomics

bioinformatics more details view paper
  • Downloaded 35,312 times
  • Download rankings, all-time:
    • Site-wide: 186
    • In bioinformatics: 4
  • Year to date:
    • Site-wide: 891
  • Since beginning of last month:
    • Site-wide: 870

The complete sequence of a human genome

genomics more details view paper
  • Downloaded 23,934 times
  • Download rankings, all-time:
    • Site-wide: 298
    • In genomics: 11
  • Year to date:
    • Site-wide: 43
  • Since beginning of last month:
    • Site-wide: 5

Highly-accurate long-read sequencing improves variant detection and assembly of a human genome

genomics more details view paper
  • Downloaded 13,166 times
  • Download rankings, all-time:
    • Site-wide: 599
    • In genomics: 40
  • Year to date:
    • Site-wide: 4,481
  • Since beginning of last month:
    • Site-wide: 3,898

Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome

bioinformatics more details view paper
  • Downloaded 10,154 times
  • Download rankings, all-time:
    • Site-wide: 863
    • In bioinformatics: 40
  • Year to date:
    • Site-wide: 45,998
  • Since beginning of last month:
    • Site-wide: 43,697

Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing

bioinformatics more details view paper
  • Downloaded 6,870 times
  • Download rankings, all-time:
    • Site-wide: 1,380
    • In bioinformatics: 87
  • Year to date:
    • Site-wide: 39,286
  • Since beginning of last month:
    • Site-wide: 52,800

A robust benchmark for germline structural variant detection

genomics more details view paper
  • Downloaded 5,933 times
  • Download rankings, all-time:
    • Site-wide: 1,719
    • In genomics: 148
  • Year to date:
    • Site-wide: 6,092
  • Since beginning of last month:
    • Site-wide: 4,892

Accurate detection of complex structural variations using single molecule sequencing

bioinformatics more details view paper
  • Downloaded 5,842 times
  • Download rankings, all-time:
    • Site-wide: 1,758
    • In bioinformatics: 127
  • Year to date:
    • Site-wide: 42,019
  • Since beginning of last month:
    • Site-wide: 52,253

Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED

genomics more details view paper
  • Downloaded 5,065 times
  • Download rankings, all-time:
    • Site-wide: 2,112
    • In genomics: 204
  • Year to date:
    • Site-wide: 2,316
  • Since beginning of last month:
    • Site-wide: 3,118

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

bioinformatics more details view paper
  • Downloaded 3,909 times
  • Download rankings, all-time:
    • Site-wide: 3,056
    • In bioinformatics: 275
  • Year to date:
    • Site-wide: 40,308
  • Since beginning of last month:
    • Site-wide: 61,737

Ribbon: Visualizing complex genome alignments and structural variation

bioinformatics more details view paper
  • Downloaded 3,619 times
  • Download rankings, all-time:
    • Site-wide: 3,425
    • In bioinformatics: 332
  • Year to date:
    • Site-wide: 23,156
  • Since beginning of last month:
    • Site-wide: 17,575

Fast and accurate reference-guided scaffolding of draft genomes

bioinformatics more details view paper
  • Downloaded 3,458 times
  • Download rankings, all-time:
    • Site-wide: 3,647
    • In bioinformatics: 361
  • Year to date:
    • Site-wide: 39,227
  • Since beginning of last month:
    • Site-wide: 36,688

Accurate detection of de novo and transmitted INDELs within exome-capture data using micro-assembly

bioinformatics more details view paper
  • Downloaded 3,052 times
  • Download rankings, all-time:
    • Site-wide: 4,360
    • In bioinformatics: 434
  • Year to date:
    • Site-wide: 85,365
  • Since beginning of last month:
    • Site-wide: 52,484

The next 20 years of genome research

bioinformatics more details view paper
  • Downloaded 2,976 times
  • Download rankings, all-time:
    • Site-wide: 4,503
    • In bioinformatics: 453
  • Year to date:
    • Site-wide: 101,471
  • Since beginning of last month:
    • Site-wide: 137,984

Comprehensive analysis of structural variants in breast cancer genomes using single molecule sequencing

bioinformatics more details view paper
  • Downloaded 2,839 times
  • Download rankings, all-time:
    • Site-wide: 4,818
    • In bioinformatics: 498
  • Year to date:
    • Site-wide: 14,220
  • Since beginning of last month:
    • Site-wide: 30,796

SplitMEM: Graphical pan-genome analysis with suffix skips

bioinformatics more details view paper
  • Downloaded 2,494 times
  • Download rankings, all-time:
    • Site-wide: 5,868
    • In bioinformatics: 638
  • Year to date:
    • Site-wide: 101,375
  • Since beginning of last month:
    • Site-wide: 63,628

Reducing INDEL calling errors in whole-genome and exome sequencing data

bioinformatics more details view paper
  • Downloaded 2,484 times
  • Download rankings, all-time:
    • Site-wide: 5,905
    • In bioinformatics: 646
  • Year to date:
    • Site-wide: 90,025
  • Since beginning of last month:
    • Site-wide: 76,591

Addressing confounding artifacts in reconstruction of gene co-expression networks

genomics more details view paper
  • Downloaded 2,405 times
  • Download rankings, all-time:
    • Site-wide: 6,173
    • In genomics: 679
  • Year to date:
    • Site-wide: 35,664
  • Since beginning of last month:
    • Site-wide: 52,306

Interactive analysis and quality assessment of single-cell copy-number variations

bioinformatics more details view paper
  • Downloaded 2,356 times
  • Download rankings, all-time:
    • Site-wide: 6,363
    • In bioinformatics: 710
  • Year to date:
    • Site-wide: 115,616
  • Since beginning of last month:
    • Site-wide: 128,969

Indel variant analysis of short-read sequencing data with Scalpel

bioinformatics more details view paper
  • Downloaded 2,320 times
  • Download rankings, all-time:
    • Site-wide: 6,496
    • In bioinformatics: 729
  • Year to date:
    • Site-wide: 35,269
  • Since beginning of last month:
    • Site-wide: 28,777

Genomic Diversity of SARS-CoV-2 During Early Introduction into the United States National Capital Region

infectious diseases more details view paper
  • Downloaded 2,246 times
  • Download rankings, all-time:
    • Site-wide: 6,801
    • In infectious diseases: 1,027
  • Year to date:
    • Site-wide: 10,331
  • Since beginning of last month:
    • Site-wide: 24,534

GenomeScope 2.0 and Smudgeplots: Reference-free profiling of polyploid genomes

bioinformatics more details view paper
  • Downloaded 1,859 times
  • Download rankings, all-time:
    • Site-wide: 8,997
    • In bioinformatics: 1,074
  • Year to date:
    • Site-wide: 39,729
  • Since beginning of last month:
    • Site-wide: 46,847

Metassembler: Merging and optimizing de novo genome assemblies

bioinformatics more details view paper
  • Downloaded 1,827 times
  • Download rankings, all-time:
    • Site-wide: 9,236
    • In bioinformatics: 1,098
  • Year to date:
    • Site-wide: 112,095
  • Since beginning of last month:
    • Site-wide: 137,885

The DOE Systems Biology Knowledgebase (KBase)

bioinformatics more details view paper
  • Downloaded 1,737 times
  • Download rankings, all-time:
    • Site-wide: 9,977
    • In bioinformatics: 1,175
  • Year to date:
    • Site-wide: 48,146
  • Since beginning of last month:
    • Site-wide: 22,029

GenomeScope: Fast reference-free genome profiling from short reads

bioinformatics more details view paper
  • Downloaded 1,736 times
  • Download rankings, all-time:
    • Site-wide: 9,989
    • In bioinformatics: 1,176
  • Year to date:
    • Site-wide: 84,906
  • Since beginning of last month:
    • Site-wide: 76,102

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

genomics more details view paper
  • Downloaded 1,710 times
  • Download rankings, all-time:
    • Site-wide: 10,196
    • In genomics: 1,081
  • Year to date:
    • Site-wide: 99,370
  • Since beginning of last month:
    • Site-wide: 68,478

Scikit-ribo: Accurate estimation and robust modeling of translation dynamics at codon resolution

bioinformatics more details view paper
  • Downloaded 1,443 times
  • Download rankings, all-time:
    • Site-wide: 13,106
    • In bioinformatics: 1,556
  • Year to date:
    • Site-wide: 77,987
  • Since beginning of last month:
    • Site-wide: 129,838

Assemblytics: a web analytics tool for the detection of assembly-based variants

genomics more details view paper
  • Downloaded 1,368 times
  • Download rankings, all-time:
    • Site-wide: 14,203
    • In genomics: 1,472
  • Year to date:
    • Site-wide: 75,927
  • Since beginning of last month:
    • Site-wide: 63,697

Skyhawk: An Artificial Neural Network-based discriminator for reviewing clinically significant genomic variants

bioinformatics more details view paper
  • Downloaded 1,343 times
  • Download rankings, all-time:
    • Site-wide: 14,613
    • In bioinformatics: 1,741
  • Year to date:
    • Site-wide: 46,018
  • Since beginning of last month:
    • Site-wide: 96,415

LRSim: a Linked Reads Simulator generating insights for better genome partitioning

bioinformatics more details view paper
  • Downloaded 1,252 times
  • Download rankings, all-time:
    • Site-wide: 16,216
    • In bioinformatics: 1,924
  • Year to date:
    • Site-wide: 115,053
  • Since beginning of last month:
    • Site-wide: 86,877

Reference Quality Assembly of the 3.5 Gb genome of Capsicum annuum from a Single Linked-Read Library

genomics more details view paper
  • Downloaded 1,166 times
  • Download rankings, all-time:
    • Site-wide: 18,029
    • In genomics: 1,818
  • Year to date:
    • Site-wide: 98,357
  • Since beginning of last month:
    • Site-wide: 78,643

iGenomics: Comprehensive DNA Sequence Analysis on your Smartphone

bioinformatics more details view paper
  • Downloaded 1,159 times
  • Download rankings, all-time:
    • Site-wide: 18,193
    • In bioinformatics: 2,144
  • Year to date:
    • Site-wide: 73,488
  • Since beginning of last month:
    • Site-wide: 89,948

SplitThreader: Exploration and analysis of rearrangements in cancer genomes

bioinformatics more details view paper
  • Downloaded 1,132 times
  • Download rankings, all-time:
    • Site-wide: 18,836
    • In bioinformatics: 2,223
  • Year to date:
    • Site-wide: 49,782
  • Since beginning of last month:
    • Site-wide: 52,632

16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model

bioinformatics more details view paper
  • Downloaded 1,128 times
  • Download rankings, all-time:
    • Site-wide: 18,922
    • In bioinformatics: 2,232
  • Year to date:
    • Site-wide: 140,184
  • Since beginning of last month:
    • Site-wide: 129,479

Samovar: Single-sample mosaic SNV calling with linked reads

genomics more details view paper
  • Downloaded 1,072 times
  • Download rankings, all-time:
    • Site-wide: 20,394
    • In genomics: 2,002
  • Year to date:
    • Site-wide: 78,066
  • Since beginning of last month:
    • Site-wide: 43,524

SVCollector: Optimized sample selection for validating and long-read resequencing of structural variants

bioinformatics more details view paper
  • Downloaded 1,010 times
  • Download rankings, all-time:
    • Site-wide: 22,239
    • In bioinformatics: 2,601
  • Year to date:
    • Site-wide: 59,943
  • Since beginning of last month:
    • Site-wide: 28,593

Local adaptation and archaic introgression shape global diversity at human structural variant loci

evolutionary biology more details view paper
  • Downloaded 979 times
  • Download rankings, all-time:
    • Site-wide: 23,249
    • In evolutionary biology: 1,004
  • Year to date:
    • Site-wide: 2,084
  • Since beginning of last month:
    • Site-wide: 4,935

First near complete haplotype phased genome assembly of River buffalo (Bubalus bubalis)

genomics more details view paper
  • Downloaded 977 times
  • Download rankings, all-time:
    • Site-wide: 23,331
    • In genomics: 2,240
  • Year to date:
    • Site-wide: 50,455
  • Since beginning of last month:
    • Site-wide: 62,151

Sapling: Accelerating Suffix Array Queries with Learned Data Models

bioinformatics more details view paper
  • Downloaded 749 times
  • Download rankings, all-time:
    • Site-wide: 33,958
    • In bioinformatics: 3,760
  • Year to date:
    • Site-wide: 52,566
  • Since beginning of last month:
    • Site-wide: 40,734

High resolution copy number inference in cancer using short-molecule nanopore sequencing

genomics more details view paper
  • Downloaded 665 times
  • Download rankings, all-time:
    • Site-wide: 39,894
    • In genomics: 3,304
  • Year to date:
    • Site-wide: 6,425
  • Since beginning of last month:
    • Site-wide: 13,351

Teaser: Individualized benchmarking and optimization of read mapping results for NGS data

bioinformatics more details view paper
  • Downloaded 649 times
  • Download rankings, all-time:
    • Site-wide: 41,173
    • In bioinformatics: 4,434
  • Year to date:
    • Site-wide: 103,091
  • Since beginning of last month:
    • Site-wide: 78,531

Vargas: heuristic-free alignment for assessing linear and graph read aligners

bioinformatics more details view paper
  • Downloaded 571 times
  • Download rankings, all-time:
    • Site-wide: 48,380
    • In bioinformatics: 5,003
  • Year to date:
    • Site-wide: 113,281
  • Since beginning of last month:
    • Site-wide: 70,360

SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in C. elegans

developmental biology more details view paper
  • Downloaded 516 times
  • Download rankings, all-time:
    • Site-wide: 54,616
    • In developmental biology: 1,300
  • Year to date:
    • Site-wide: 60,677
  • Since beginning of last month:
    • Site-wide: 131,589

Jasmine: Population-scale structural variant comparison and analysis

genomics more details view paper
  • Downloaded 482 times
  • Download rankings, all-time:
    • Site-wide: 58,957
    • In genomics: 4,352
  • Year to date:
    • Site-wide: 5,756
  • Since beginning of last month:
    • Site-wide: 625

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL)

bioinformatics more details view paper
  • Downloaded 452 times
  • Download rankings, all-time:
    • Site-wide: 63,115
    • In bioinformatics: 6,192
  • Year to date:
    • Site-wide: 6,355
  • Since beginning of last month:
    • Site-wide: 2,515

Unraveling molecular mechanisms of immunity and cancer-resistance using the genomes of the Neotropical bats Artibeus jamaicensis and Pteronotus mesoamericanus

genomics more details view paper
  • Downloaded 399 times
  • Download rankings, all-time:
    • Site-wide: 71,701
    • In genomics: 4,920
  • Year to date:
    • Site-wide: 23,723
  • Since beginning of last month:
    • Site-wide: 9,392

The human Origin Recognition Complex is essential for pre-RC assembly, mitosis and maintenance of nuclear structure.

molecular biology more details view paper
  • Downloaded 388 times
  • Download rankings, all-time:
    • Site-wide: 73,559
    • In molecular biology: 2,152
  • Year to date:
    • Site-wide: 66,461
  • Since beginning of last month:
    • Site-wide: 91,051

LongTron: Automated Analysis of Long Read Spliced Alignment Accuracy

bioinformatics more details view paper
  • Downloaded 385 times
  • Download rankings, all-time:
    • Site-wide: 74,098
    • In bioinformatics: 6,923
  • Year to date:
    • Site-wide: 52,281
  • Since beginning of last month:
    • Site-wide: 93,954

Pan-genomic Matching Statistics for Targeted Nanopore Sequencing

bioinformatics more details view paper
  • Downloaded 346 times
  • Download rankings, all-time:
    • Site-wide: 81,433
    • In bioinformatics: 7,406
  • Year to date:
    • Site-wide: 9,322
  • Since beginning of last month:
    • Site-wide: 20,818

Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud

bioinformatics more details view paper
  • Downloaded 314 times
  • Download rankings, all-time:
    • Site-wide: 87,736
    • In bioinformatics: 7,823
  • Year to date:
    • Site-wide: 90,321
  • Since beginning of last month:
    • Site-wide: 89,559

SVCollector: Optimized sample selection for cost-efficient long-read population sequencing

bioinformatics more details view paper
  • Downloaded 302 times
  • Download rankings, all-time:
    • Site-wide: 90,334
    • In bioinformatics: 7,983
  • Year to date:
    • Site-wide: 58,426
  • Since beginning of last month:
    • Site-wide: 74,239

Recovering rearranged cancer chromosomes from karyotype graphs

bioinformatics more details view paper
  • Downloaded 248 times
  • Download rankings, all-time:
    • Site-wide: 102,548
    • In bioinformatics: 8,747
  • Year to date:
    • Site-wide: 141,326
  • Since beginning of last month:
    • Site-wide: 133,289

A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor

microbiology more details view paper
  • Downloaded 231 times
  • Download rankings, all-time:
    • Site-wide: 106,567
    • In microbiology: 7,788
  • Year to date:
    • Site-wide: 76,311
  • Since beginning of last month:
    • Site-wide: 41,591

Fast and accurate genome-wide predictions and structural modeling of protein-protein interactions using Galaxy

genomics more details view paper
  • Downloaded 188 times
  • Download rankings, all-time:
    • Site-wide: 116,771
    • In genomics: 6,530
  • Year to date:
    • Site-wide: 21,369
  • Since beginning of last month:
    • Site-wide: 36,203

PanLingua

News