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Author: Michael C. Schatz

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  • All-time downloads: 127,618 (rank: 222 out of 397,991)
  • Categories:
    • bioinformatics: 97,678 (rank: 1 out of 33,943)
    • genomics: 29,800 (rank: 258 out of 42,257)
    • microbiology: 140 (rank: 40,089 (tie) out of 45,800)

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Preprints

The human Origin Recognition Complex is essential for pre-RC assembly, mitosis and maintenance of nuclear structure.

molecular biology more details view paper

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SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in C. elegans

developmental biology more details view paper

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SVCollector: Optimized sample selection for cost-efficient long-read population sequencing

bioinformatics more details view paper

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Third-generation sequencing and the future of genomics

bioinformatics more details view paper
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Highly-accurate long-read sequencing improves variant detection and assembly of a human genome

genomics more details view paper
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Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome

bioinformatics more details view paper
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Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing

bioinformatics more details view paper
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Accurate detection of complex structural variations using single molecule sequencing

bioinformatics more details view paper
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A robust benchmark for germline structural variant detection

genomics more details view paper
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Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

bioinformatics more details view paper
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Ribbon: Visualizing complex genome alignments and structural variation

bioinformatics more details view paper
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Fast and accurate reference-guided scaffolding of draft genomes

bioinformatics more details view paper
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Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED

genomics more details view paper
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Accurate detection of de novo and transmitted INDELs within exome-capture data using micro-assembly

bioinformatics more details view paper
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The next 20 years of genome research

bioinformatics more details view paper
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SplitMEM: Graphical pan-genome analysis with suffix skips

bioinformatics more details view paper
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Reducing INDEL calling errors in whole-genome and exome sequencing data

bioinformatics more details view paper
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Interactive analysis and quality assessment of single-cell copy-number variations

bioinformatics more details view paper
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Addressing confounding artifacts in reconstruction of gene co-expression networks

genomics more details view paper
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Comprehensive analysis of structural variants in breast cancer genomes using single molecule sequencing

bioinformatics more details view paper
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Indel variant analysis of short-read sequencing data with Scalpel

bioinformatics more details view paper
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Metassembler: Merging and optimizing de novo genome assemblies

bioinformatics more details view paper
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Paragraph: A graph-based structural variant genotyper for short-read sequence data

genomics more details view paper
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GenomeScope: Fast reference-free genome profiling from short reads

bioinformatics more details view paper
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Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

genomics more details view paper
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GenomeScope 2.0 and Smudgeplots: Reference-free profiling of polyploid genomes

bioinformatics more details view paper
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The DOE Systems Biology Knowledgebase (KBase)

bioinformatics more details view paper
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Scikit-ribo: Accurate estimation and robust modeling of translation dynamics at codon resolution

bioinformatics more details view paper
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Assemblytics: a web analytics tool for the detection of assembly-based variants

genomics more details view paper
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LRSim: a Linked Reads Simulator generating insights for better genome partitioning

bioinformatics more details view paper
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Skyhawk: An Artificial Neural Network-based discriminator for reviewing clinically significant genomic variants

bioinformatics more details view paper
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16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model

bioinformatics more details view paper
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Reference Quality Assembly of the 3.5 Gb genome of Capsicum annuum from a Single Linked-Read Library

genomics more details view paper
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SplitThreader: Exploration and analysis of rearrangements in cancer genomes

bioinformatics more details view paper
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Samovar: Single-sample mosaic SNV calling with linked reads

genomics more details view paper
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iGenomics: Comprehensive DNA Sequence Analysis on your Smartphone

bioinformatics more details view paper
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SVCollector: Optimized sample selection for validating and long-read resequencing of structural variants

bioinformatics more details view paper
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First near complete haplotype phased genome assembly of River buffalo (Bubalus bubalis)

genomics more details view paper
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Teaser: Individualized benchmarking and optimization of read mapping results for NGS data

bioinformatics more details view paper
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Sapling: Accelerating Suffix Array Queries with Learned Data Models

bioinformatics more details view paper
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Vargas: heuristic-free alignment for assessing linear and graph read aligners

bioinformatics more details view paper
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Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud

bioinformatics more details view paper
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Recovering rearranged cancer chromosomes from karyotype graphs

bioinformatics more details view paper
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A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor

microbiology more details view paper
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