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Author: Malachi Griffith

Rankings

  • All-time downloads: 22,954 (rank: 9,945 (tie) )
  • Categories:
    • bioinformatics: 15,175 (rank: 521 )
    • cancer biology: 1,852 (rank: 4,762 (tie) )
    • genetic and genomic medicine: 145 (rank: 14,111 (tie) )
    • genetics: 3,427 (rank: 6,020 (tie) )
    • genomics: 1,177 (rank: 22,866 (tie) )
    • oncology: 1,178 (rank: 628 (tie) )

Downloads per author, site-wide

Preprints

Neoantigen DNA vaccines are safe, feasible, and capable of inducing neoantigen-specific immune responses in patients with triple negative breast cancer

oncology more details view paper

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A harmonized meta-knowledgebase of clinical interpretations of cancer genomic variants

bioinformatics more details view paper
  • Downloaded 3,584 times
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    • Site-wide: 4,236
    • In bioinformatics: 397
  • Year to date:
    • Site-wide: 28,068
  • Since beginning of last month:
    • Site-wide: 12,118

Standard operating procedure for somatic variant refinement of tumor sequencing data

genetics more details view paper
  • Downloaded 3,427 times
  • Download rankings, all-time:
    • Site-wide: 4,520
    • In genetics: 161
  • Year to date:
    • Site-wide: 18,856
  • Since beginning of last month:
    • Site-wide: 51,753

pVACtools: a computational toolkit to identify and visualize cancer neoantigens

bioinformatics more details view paper
  • Downloaded 2,055 times
  • Download rankings, all-time:
    • Site-wide: 9,543
    • In bioinformatics: 1,063
  • Year to date:
    • Site-wide: 60,104
  • Since beginning of last month:
    • Site-wide: 139,386

GenVisR: Genomic Visualizations in R

bioinformatics more details view paper
  • Downloaded 1,976 times
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    • Site-wide: 10,144
    • In bioinformatics: 1,146
  • Year to date:
    • Site-wide: 98,225
  • Since beginning of last month:
    • Site-wide: 86,406

Wikidata as a FAIR knowledge graph for the life sciences

bioinformatics more details view paper
  • Downloaded 1,790 times
  • Download rankings, all-time:
    • Site-wide: 11,771
    • In bioinformatics: 1,305
  • Year to date:
    • Site-wide: 34,859
  • Since beginning of last month:
    • Site-wide: 31,495

RegTools: Integrated analysis of genomic and transcriptomic data for the discovery of splicing variants in cancer

bioinformatics more details view paper
  • Downloaded 1,461 times
  • Download rankings, all-time:
    • Site-wide: 16,058
    • In bioinformatics: 1,815
  • Year to date:
    • Site-wide: 14,810
  • Since beginning of last month:
    • Site-wide: 22,512

CIViC: A knowledgebase for expert-crowdsourcing the clinical interpretation of variants in cancer.

cancer biology more details view paper
  • Downloaded 1,420 times
  • Download rankings, all-time:
    • Site-wide: 16,773
    • In cancer biology: 366
  • Year to date:
    • Site-wide: 113,156
  • Since beginning of last month:
    • Site-wide: 87,636

Neoadjuvant and Adjuvant Pembrolizumab in Resectable Locally Advanced, Human Papillomavirus-Unrelated Head and Neck Cancer: A Multicenter, Phase 2 Trial

oncology more details view paper
  • Downloaded 1,178 times
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    • Site-wide: 22,227
    • In oncology: 31
  • Year to date:
    • Site-wide: 27,194
  • Since beginning of last month:
    • Site-wide: 22,643

The prognostic effects of somatic mutations in ER-positive breast cancer

genomics more details view paper
  • Downloaded 941 times
  • Download rankings, all-time:
    • Site-wide: 31,167
    • In genomics: 2,663
  • Year to date:
    • Site-wide: 97,195
  • Since beginning of last month:
    • Site-wide: 157,821

Text-mining clinically relevant cancer biomarkers for curation into the CIViC database

bioinformatics more details view paper
  • Downloaded 904 times
  • Download rankings, all-time:
    • Site-wide: 33,066
    • In bioinformatics: 3,604
  • Year to date:
    • Site-wide: 87,192
  • Since beginning of last month:
    • Site-wide: 142,967

Identification of community-consensus clinically relevant variants and development of single molecule molecular inversion probes using the CIViC database

bioinformatics more details view paper
  • Downloaded 697 times
  • Download rankings, all-time:
    • Site-wide: 47,929
    • In bioinformatics: 4,913
  • Year to date:
    • Site-wide: 105,111
  • Since beginning of last month:
    • Site-wide: 96,776

Clingen Cancer Somatic Working Group: standardizing and democratizing access to cancer molecular diagnostic data to drive translational research

bioinformatics more details view paper
  • Downloaded 511 times
  • Download rankings, all-time:
    • Site-wide: 71,138
    • In bioinformatics: 6,691
  • Year to date:
    • Site-wide: 99,309
  • Since beginning of last month:
    • Site-wide: 111,489

The GA4GH Variation Representation Specification (VRS): a Computational Framework for the Precise Representation and Federated Identification of Molecular Variation

bioinformatics more details view paper
  • Downloaded 507 times
  • Download rankings, all-time:
    • Site-wide: 71,741
    • In bioinformatics: 6,726
  • Year to date:
    • Site-wide: 15,470
  • Since beginning of last month:
    • Site-wide: 16,525

The CIViC knowledge model and standard operating procedures for curation and clinical interpretation of variants in cancer

bioinformatics more details view paper
  • Downloaded 386 times
  • Download rankings, all-time:
    • Site-wide: 95,325
    • In bioinformatics: 8,280
  • Year to date:
    • Site-wide: 121,484
  • Since beginning of last month:
    • Site-wide: 143,498

CIViCpy: a Python software development and analysis toolkit for the CIViC knowledgebase

bioinformatics more details view paper
  • Downloaded 354 times
  • Download rankings, all-time:
    • Site-wide: 102,816
    • In bioinformatics: 8,737
  • Year to date:
    • Site-wide: 115,127
  • Since beginning of last month:
    • Site-wide: 68,550

DGIdb 3.0: a redesign and expansion of the drug-gene interaction database

bioinformatics more details view paper
  • Downloaded 336 times
  • Download rankings, all-time:
    • Site-wide: 107,083
    • In bioinformatics: 8,984
  • Year to date:
    • Site-wide: 160,172
  • Since beginning of last month:
    • Site-wide: 148,712

Accurate neoantigen prediction depends on mutation position relative to patient allele-specific MHC anchor location

bioinformatics more details view paper
  • Downloaded 320 times
  • Download rankings, all-time:
    • Site-wide: 111,120
    • In bioinformatics: 9,247
  • Year to date:
    • Site-wide: 54,319
  • Since beginning of last month:
    • Site-wide: 54,015

p53 mutations exhibit sex specific gain-of-function activity in gliomagenesis

cancer biology more details view paper
  • Downloaded 297 times
  • Download rankings, all-time:
    • Site-wide: 116,956
    • In cancer biology: 3,562
  • Year to date:
    • Site-wide: 34,518
  • Since beginning of last month:
    • Site-wide: 68,982

Integration of the Drug-Gene Interaction Database (DGIdb) with open crowdsource efforts

bioinformatics more details view paper
  • Downloaded 294 times
  • Download rankings, all-time:
    • Site-wide: 117,869
    • In bioinformatics: 9,655
  • Year to date:
    • Site-wide: 104,508
  • Since beginning of last month:
    • Site-wide: 141,088

Evolution of the open-access CIViC knowledgebase is driven by the needsof the cancer variant interpretation community

genomics more details view paper
  • Downloaded 236 times
  • Download rankings, all-time:
    • Site-wide: 133,143
    • In genomics: 7,144
  • Year to date:
    • Site-wide: 46,929
  • Since beginning of last month:
    • Site-wide: 72,594

Ultra Deep Sequencing Reveals the Mutational Landscape of Classical Hodgkin Lymphoma

genetic and genomic medicine more details view paper
  • Downloaded 145 times
  • Download rankings, all-time:
    • Site-wide: 153,561
    • In genetic and genomic medicine: 964
  • Year to date:
    • Site-wide: 82,616
  • Since beginning of last month:
    • Site-wide: 105,463

Comparative Multiomic Analysis Reveals Low T Cell Infiltration as the Primary Feature of Tobacco Use in HPV(+) Oropharyngeal Cancer

cancer biology more details view paper
  • Downloaded 135 times
  • Download rankings, all-time:
    • Site-wide: 155,266
    • In cancer biology: 4,779
  • Year to date:
    • Site-wide: 88,055
  • Since beginning of last month:
    • Site-wide: 95,308

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