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Author: Obi L Griffith

Rankings

  • All-time downloads: 22,859 (rank: 8,683 (tie) )
  • Categories:
    • bioinformatics: 12,872 (rank: 582 )
    • cancer biology: 4,451 (rank: 879 (tie) )
    • genetic and genomic medicine: 70 (rank: 12,372 (tie) )
    • genetics: 3,278 (rank: 5,928 (tie) )
    • genomics: 1,132 (rank: 21,521 (tie) )
    • oncology: 1,056 (rank: 574 (tie) )

Downloads per author, site-wide

Preprints

A harmonized meta-knowledgebase of clinical interpretations of cancer genomic variants

bioinformatics more details view paper
  • Downloaded 3,414 times
  • Download rankings, all-time:
    • Site-wide: 4,013
    • In bioinformatics: 388
  • Year to date:
    • Site-wide: 35,639
  • Since beginning of last month:
    • Site-wide: 107,902

Standard operating procedure for somatic variant refinement of tumor sequencing data

genetics more details view paper
  • Downloaded 3,278 times
  • Download rankings, all-time:
    • Site-wide: 4,265
    • In genetics: 161
  • Year to date:
    • Site-wide: 17,992
  • Since beginning of last month:
    • Site-wide: 48,681

Stool-derived eukaryotic RNA biomarkers for detection of high-risk adenomas

cancer biology more details view paper
  • Downloaded 2,663 times
  • Download rankings, all-time:
    • Site-wide: 5,738
    • In cancer biology: 87
  • Year to date:
    • Site-wide: 8,066
  • Since beginning of last month:
    • Site-wide: 112,059

pVACtools: a computational toolkit to identify and visualize cancer neoantigens

bioinformatics more details view paper
  • Downloaded 2,009 times
  • Download rankings, all-time:
    • Site-wide: 8,679
    • In bioinformatics: 999
  • Year to date:
    • Site-wide: 43,171
  • Since beginning of last month:
    • Site-wide: 110,524

Wikidata as a FAIR knowledge graph for the life sciences

bioinformatics more details view paper
  • Downloaded 1,689 times
  • Download rankings, all-time:
    • Site-wide: 11,220
    • In bioinformatics: 1,312
  • Year to date:
    • Site-wide: 31,309
  • Since beginning of last month:
    • Site-wide: 55,873

CIViC: A knowledgebase for expert-crowdsourcing the clinical interpretation of variants in cancer.

cancer biology more details view paper
  • Downloaded 1,355 times
  • Download rankings, all-time:
    • Site-wide: 15,585
    • In cancer biology: 333
  • Year to date:
    • Site-wide: 125,743
  • Since beginning of last month:
    • Site-wide: None

RegTools: Integrated analysis of genomic and transcriptomic data for the discovery of splicing variants in cancer

bioinformatics more details view paper
  • Downloaded 1,316 times
  • Download rankings, all-time:
    • Site-wide: 16,330
    • In bioinformatics: 1,917
  • Year to date:
    • Site-wide: 12,881
  • Since beginning of last month:
    • Site-wide: 32,448

Neoadjuvant and Adjuvant Pembrolizumab in Resectable Locally Advanced, Human Papillomavirus-Unrelated Head and Neck Cancer: A Multicenter, Phase 2 Trial

oncology more details view paper
  • Downloaded 1,056 times
  • Download rankings, all-time:
    • Site-wide: 22,551
    • In oncology: 28
  • Year to date:
    • Site-wide: 25,603
  • Since beginning of last month:
    • Site-wide: 77,375

The prognostic effects of somatic mutations in ER-positive breast cancer

genomics more details view paper
  • Downloaded 914 times
  • Download rankings, all-time:
    • Site-wide: 27,781
    • In genomics: 2,517
  • Year to date:
    • Site-wide: 66,542
  • Since beginning of last month:
    • Site-wide: None

Text-mining clinically relevant cancer biomarkers for curation into the CIViC database

bioinformatics more details view paper
  • Downloaded 876 times
  • Download rankings, all-time:
    • Site-wide: 29,514
    • In bioinformatics: 3,341
  • Year to date:
    • Site-wide: 58,795
  • Since beginning of last month:
    • Site-wide: 110,510

Identification of community-consensus clinically relevant variants and development of single molecule molecular inversion probes using the CIViC database

bioinformatics more details view paper
  • Downloaded 645 times
  • Download rankings, all-time:
    • Site-wide: 44,784
    • In bioinformatics: 4,733
  • Year to date:
    • Site-wide: 96,448
  • Since beginning of last month:
    • Site-wide: 52,361

MyGene.info and MyVariant.info: Gene and Variant Annotation Query Services

bioinformatics more details view paper
  • Downloaded 625 times
  • Download rankings, all-time:
    • Site-wide: 46,636
    • In bioinformatics: 4,900
  • Year to date:
    • Site-wide: 101,551
  • Since beginning of last month:
    • Site-wide: 97,441

Clingen Cancer Somatic Working Group: standardizing and democratizing access to cancer molecular diagnostic data to drive translational research

bioinformatics more details view paper
  • Downloaded 468 times
  • Download rankings, all-time:
    • Site-wide: 65,768
    • In bioinformatics: 6,390
  • Year to date:
    • Site-wide: 80,309
  • Since beginning of last month:
    • Site-wide: None

The GA4GH Variation Representation Specification (VRS): a Computational Framework for the Precise Representation and Federated Identification of Molecular Variation

bioinformatics more details view paper
  • Downloaded 358 times
  • Download rankings, all-time:
    • Site-wide: 85,068
    • In bioinformatics: 7,700
  • Year to date:
    • Site-wide: 13,818
  • Since beginning of last month:
    • Site-wide: 3,561

The CIViC knowledge model and standard operating procedures for curation and clinical interpretation of variants in cancer

bioinformatics more details view paper
  • Downloaded 351 times
  • Download rankings, all-time:
    • Site-wide: 86,545
    • In bioinformatics: 7,796
  • Year to date:
    • Site-wide: 100,081
  • Since beginning of last month:
    • Site-wide: None

DGIdb 3.0: a redesign and expansion of the drug-gene interaction database

bioinformatics more details view paper
  • Downloaded 312 times
  • Download rankings, all-time:
    • Site-wide: 95,042
    • In bioinformatics: 8,339
  • Year to date:
    • Site-wide: 150,803
  • Since beginning of last month:
    • Site-wide: None

CIViCpy: a Python software development and analysis toolkit for the CIViC knowledgebase

bioinformatics more details view paper
  • Downloaded 300 times
  • Download rankings, all-time:
    • Site-wide: 97,590
    • In bioinformatics: 8,500
  • Year to date:
    • Site-wide: 113,985
  • Since beginning of last month:
    • Site-wide: 55,599

Integration of the Drug-Gene Interaction Database (DGIdb) with open crowdsource efforts

bioinformatics more details view paper
  • Downloaded 261 times
  • Download rankings, all-time:
    • Site-wide: 106,731
    • In bioinformatics: 9,089
  • Year to date:
    • Site-wide: 77,318
  • Since beginning of last month:
    • Site-wide: 63,271

Spontaneous aggressive ERα+ mammary tumor model is driven by Kras activation

cancer biology more details view paper
  • Downloaded 250 times
  • Download rankings, all-time:
    • Site-wide: 109,468
    • In cancer biology: 3,300
  • Year to date:
    • Site-wide: 148,673
  • Since beginning of last month:
    • Site-wide: None

Accurate neoantigen prediction depends on mutation position relative to patient allele-specific MHC anchor location

bioinformatics more details view paper
  • Downloaded 248 times
  • Download rankings, all-time:
    • Site-wide: 109,974
    • In bioinformatics: 9,281
  • Year to date:
    • Site-wide: 46,263
  • Since beginning of last month:
    • Site-wide: 7,437

p53 mutations exhibit sex specific gain-of-function activity in gliomagenesis

cancer biology more details view paper
  • Downloaded 183 times
  • Download rankings, all-time:
    • Site-wide: 126,262
    • In cancer biology: 3,823
  • Year to date:
    • Site-wide: 33,647
  • Since beginning of last month:
    • Site-wide: 20,055

Evolution of the open-access CIViC knowledgebase is driven by the needsof the cancer variant interpretation community

genomics more details view paper
  • Downloaded 157 times
  • Download rankings, all-time:
    • Site-wide: 132,046
    • In genomics: 7,047
  • Year to date:
    • Site-wide: 40,097
  • Since beginning of last month:
    • Site-wide: 86,946

Ultra Deep Sequencing Reveals the Mutational Landscape of Classical Hodgkin Lymphoma

genetic and genomic medicine more details view paper
  • Downloaded 70 times
  • Download rankings, all-time:
    • Site-wide: 148,225
    • In genetic and genomic medicine: 856
  • Year to date:
    • Site-wide: 84,794
  • Since beginning of last month:
    • Site-wide: 63,338

Single Cell T Cell Receptor Repertoire Profiling for Dogs

genomics more details view paper
  • Downloaded 61 times
  • Download rankings, all-time:
    • Site-wide: 149,219
    • In genomics: 7,514
  • Year to date:
    • Site-wide: 93,763
  • Since beginning of last month:
    • Site-wide: 24,685

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