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Author: Yin Shen

  • ORCiD: http://orcid.org/0000-0002-4201-3948
  • Most recently observed institution: Institute for Human Genetics, University of California, San Francisco, San Francisco, CA, USA. Department of Neurology, University of California, San Francisco, San Francisco, CA, USA.

Rankings

  • All-time downloads: 16,023 (rank: 12,849 )
  • Categories:
    • bioinformatics: 2,322 (rank: 6,723 (tie) )
    • cardiovascular medicine: 1,411 (rank: 303 (tie) )
    • cell biology: 258 (rank: 32,769 (tie) )
    • genetics: 235 (rank: 37,793 (tie) )
    • genomics: 8,753 (rank: 2,488 )
    • infectious diseases: 880 (rank: 26,798 (tie) )
    • neuroscience: 2,164 (rank: 11,164 )

Downloads per author, site-wide

Preprints

Systematic mapping of chromatin state landscapes during mouse development

genomics more details view paper
  • Downloaded 4,782 times
  • Download rankings, all-time:
    • Site-wide: 2,456
    • In genomics: 244
  • Year to date:
    • Site-wide: 19,327
  • Since beginning of last month:
    • Site-wide: 20,041

3D Epigenomic Characterization Reveals Insights Into Gene Regulation and Lineage Specification During Corticogenesis

genomics more details view paper
  • Downloaded 1,838 times
  • Download rankings, all-time:
    • Site-wide: 9,731
    • In genomics: 1,000
  • Year to date:
    • Site-wide: 13,708
  • Since beginning of last month:
    • Site-wide: 20,767

cis-Regulatory Chromatin Contacts in Neural Cells Reveal Contributions of Genetic Variants to Complex Neurological Disorders

genomics more details view paper
  • Downloaded 1,335 times
  • Download rankings, all-time:
    • Site-wide: 15,635
    • In genomics: 1,574
  • Year to date:
    • Site-wide: 70,727
  • Since beginning of last month:
    • Site-wide: 48,970

SMNN: Batch Effect Correction for Single-cell RNA-seq data via Supervised Mutual Nearest Neighbor Detection

bioinformatics more details view paper
  • Downloaded 1,292 times
  • Download rankings, all-time:
    • Site-wide: 16,440
    • In bioinformatics: 1,926
  • Year to date:
    • Site-wide: 43,875
  • Since beginning of last month:
    • Site-wide: 54,870

Superior Colliculus-Projecting GABAergic Retinal Ganglion Cells Mediate Looming-Evoked Flight Response

neuroscience more details view paper
  • Downloaded 974 times
  • Download rankings, all-time:
    • Site-wide: 24,938
    • In neuroscience: 3,136
  • Year to date:
    • Site-wide: 27,144
  • Since beginning of last month:
    • Site-wide: 52,049

Impact of Chronic Comorbidities on Progression and Prognosis in Patients with COVID-19: A Retrospective Cohort Study in 1031 Hospitalized Cases in Wuhan, China

cardiovascular medicine more details view paper
  • Downloaded 909 times
  • Download rankings, all-time:
    • Site-wide: 27,514
    • In cardiovascular medicine: 44
  • Year to date:
    • Site-wide: 22,379
  • Since beginning of last month:
    • Site-wide: 19,152

Derivation and validation of a prognostic model for predicting in-hospital mortality in patients admitted with COVID-19 in Wuhan, China: the PLANS (Platelet Lymphocyte Age Neutrophil Sex) model

infectious diseases more details view paper
  • Downloaded 880 times
  • Download rankings, all-time:
    • Site-wide: 28,834
    • In infectious diseases: 2,268
  • Year to date:
    • Site-wide: 15,854
  • Since beginning of last month:
    • Site-wide: 12,982

Proximal recolonization by self-renewing microglia re-establishes microglial homeostasis in the adult mouse brain

neuroscience more details view paper
  • Downloaded 741 times
  • Download rankings, all-time:
    • Site-wide: 36,568
    • In neuroscience: 4,972
  • Year to date:
    • Site-wide: 67,737
  • Since beginning of last month:
    • Site-wide: 82,059

Parallel Characterization of cis-Regulatory Elements for Multiple Genes Using CRISPRpath

genomics more details view paper
  • Downloaded 651 times
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    • Site-wide: 43,427
    • In genomics: 3,500
  • Year to date:
    • Site-wide: 5,308
  • Since beginning of last month:
    • Site-wide: 18,400

SAME-clustering: Single-cell Aggregated Clustering via Mixture Model Ensemble

bioinformatics more details view paper
  • Downloaded 631 times
  • Download rankings, all-time:
    • Site-wide: 45,170
    • In bioinformatics: 4,731
  • Year to date:
    • Site-wide: 138,368
  • Since beginning of last month:
    • Site-wide: 137,434

Early Diagnosis and Clinical Significance of Acute Cardiac Injury - Under the Iceberg: A Retrospective Cohort Study of 619 Non-critically Ill Hospitalized COVID-19 Pneumonia Patients

cardiovascular medicine more details view paper
  • Downloaded 502 times
  • Download rankings, all-time:
    • Site-wide: 59,786
    • In cardiovascular medicine: 92
  • Year to date:
    • Site-wide: 55,313
  • Since beginning of last month:
    • Site-wide: 52,010

Transcriptional Network Orchestrating Regional Patterning of Cortical Progenitors

neuroscience more details view paper
  • Downloaded 449 times
  • Download rankings, all-time:
    • Site-wide: 67,384
    • In neuroscience: 9,987
  • Year to date:
    • Site-wide: 42,747
  • Since beginning of last month:
    • Site-wide: 77,945

THUNDER: A reference-free deconvolution method to infer cell type proportions from bulk Hi-C data

bioinformatics more details view paper
  • Downloaded 268 times
  • Download rankings, all-time:
    • Site-wide: 103,363
    • In bioinformatics: 8,812
  • Year to date:
    • Site-wide: 66,510
  • Since beginning of last month:
    • Site-wide: 59,982

SMART-Q:  An Integrative Pipeline Quantifying Cell Type-Specific RNA Transcription

cell biology more details view paper
  • Downloaded 258 times
  • Download rankings, all-time:
    • Site-wide: 105,837
    • In cell biology: 4,901
  • Year to date:
    • Site-wide: 125,545
  • Since beginning of last month:
    • Site-wide: 121,059

The C. elegans homolog of TMEM132D, a human panic-disorder and anxiety risk gene, modulates neuronal morphogenesis through the WAVE-regulatory complex

genetics more details view paper
  • Downloaded 235 times
  • Download rankings, all-time:
    • Site-wide: 111,320
    • In genetics: 4,725
  • Year to date:
    • Site-wide: 56,257
  • Since beginning of last month:
    • Site-wide: 67,323

HPRep: Quantifying reproducibility in HiChIP and PLAC-seq datasets

genomics more details view paper
  • Downloaded 147 times
  • Download rankings, all-time:
    • Site-wide: 132,157
    • In genomics: 7,050
  • Year to date:
    • Site-wide: 69,180
  • Since beginning of last month:
    • Site-wide: 60,075

CharPlant: A De Novo Open Chromatin Region (OCR) Prediction Tool for Plant Genomes

bioinformatics more details view paper
  • Downloaded 131 times
  • Download rankings, all-time:
    • Site-wide: 135,741
    • In bioinformatics: 10,614
  • Year to date:
    • Site-wide: 107,002
  • Since beginning of last month:
    • Site-wide: 121,159

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