Rxivist logo

Author: James Taylor

Rankings

  • All-time downloads: 33,317 (rank: 1,245 out of 381,998)
  • Categories:
    • biochemistry: 427 (rank: 8,060 (tie) out of 17,512)
    • bioinformatics: 16,122 (rank: 200 out of 32,754)
    • biophysics: 228 (rank: 12,322 (tie) out of 15,736)
    • cell biology: 2,290 (rank: 1,445 (tie) out of 28,349)
    • developmental biology: 1,442 (rank: 1,452 (tie) out of 14,787)
    • genomics: 6,643 (rank: 2,424 out of 40,704)
    • microbiology: 4,367 (rank: 1,535 out of 42,876)
    • molecular biology: 986 (rank: 3,571 (tie) out of 19,788)
    • neuroscience: 812 (rank: 19,904 (tie) out of 64,123)

Downloads per author, site-wide

Preprints

Bioconda: A sustainable and comprehensive software distribution for the life sciences

bioinformatics more details view paper
  • Downloaded 5,219 times
  • Download rankings, all-time:
    • Site-wide: 692 out of 89,119
    • In bioinformatics: 116 out of 8,414
  • Year to date:
    • Site-wide: 3,559 out of 89,119
  • Since beginning of last month:
    • Site-wide: 4,546 out of 89,119

Practical computational reproducibility in the life sciences

bioinformatics more details view paper
  • Downloaded 3,077 times
  • Download rankings, all-time:
    • Site-wide: 1,766 out of 89,119
    • In bioinformatics: 316 out of 8,414
  • Year to date:
    • Site-wide: 34,150 out of 89,119
  • Since beginning of last month:
    • Site-wide: 26,842 out of 89,119

Measuring the reproducibility and quality of Hi-C data

genomics more details view paper
  • Downloaded 2,586 times
  • Download rankings, all-time:
    • Site-wide: 2,362 out of 89,119
    • In genomics: 451 out of 5,683
  • Year to date:
    • Site-wide: 45,573 out of 89,119
  • Since beginning of last month:
    • Site-wide: 61,618 out of 89,119

HiFive: a tool suite for easy and efficient HiC and 5C data analysis

bioinformatics more details view paper
  • Downloaded 2,523 times
  • Download rankings, all-time:
    • Site-wide: 2,471 out of 89,119
    • In bioinformatics: 454 out of 8,414
  • Year to date:
    • Site-wide: 68,975 out of 89,119
  • Since beginning of last month:
    • Site-wide: 76,170 out of 89,119

Chromosome Conformation Paints Reveal The Role Of Lamina Association In Genome Organization And Regulation

cell biology more details view paper
  • Downloaded 2,290 times
  • Download rankings, all-time:
    • Site-wide: 2,916 out of 89,119
    • In cell biology: 83 out of 4,564
  • Year to date:
    • Site-wide: 22,154 out of 89,119
  • Since beginning of last month:
    • Site-wide: 47,961 out of 89,119

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

microbiology more details view paper
  • Downloaded 1,913 times
  • Download rankings, all-time:
    • Site-wide: 3,907 out of 89,119
    • In microbiology: 248 out of 7,660
  • Year to date:
    • Site-wide: 28,452 out of 89,119
  • Since beginning of last month:
    • Site-wide: 25,430 out of 89,119

The full-length transcriptome of C. elegans using direct RNA sequencing

genomics more details view paper
  • Downloaded 1,666 times
  • Download rankings, all-time:
    • Site-wide: 4,914 out of 89,119
    • In genomics: 821 out of 5,683
  • Year to date:
    • Site-wide: 16,473 out of 89,119
  • Since beginning of last month:
    • Site-wide: 23,437 out of 89,119

Lamins organize the global three-dimensional genome from the nuclear periphery

genomics more details view paper
  • Downloaded 1,382 times
  • Download rankings, all-time:
    • Site-wide: 6,696 out of 89,119
    • In genomics: 1,058 out of 5,683
  • Year to date:
    • Site-wide: 27,075 out of 89,119
  • Since beginning of last month:
    • Site-wide: 74,479 out of 89,119

Community-driven data analysis training for biology

bioinformatics more details view paper
  • Downloaded 1,377 times
  • Download rankings, all-time:
    • Site-wide: 6,730 out of 89,119
    • In bioinformatics: 1,195 out of 8,414
  • Year to date:
    • Site-wide: 18,220 out of 89,119
  • Since beginning of last month:
    • Site-wide: 18,838 out of 89,119

Enhancing pre-defined workflows with ad hoc analytics using Galaxy, Docker and Jupyter

bioinformatics more details view paper
  • Downloaded 1,254 times
  • Download rankings, all-time:
    • Site-wide: 7,868 out of 89,119
    • In bioinformatics: 1,360 out of 8,414
  • Year to date:
    • Site-wide: 53,326 out of 89,119
  • Since beginning of last month:
    • Site-wide: 56,296 out of 89,119

Understanding trivial challenges of microbial genomics: An assembly example

microbiology more details view paper
  • Downloaded 999 times
  • Download rankings, all-time:
    • Site-wide: 11,465 out of 89,119
    • In microbiology: 678 out of 7,660
  • Year to date:
    • Site-wide: 14,291 out of 89,119
  • Since beginning of last month:
    • Site-wide: 21,950 out of 89,119

TADs pair homologous chromosomes to promote interchromosomal gene regulation

molecular biology more details view paper
  • Downloaded 986 times
  • Download rankings, all-time:
    • Site-wide: 11,691 out of 89,119
    • In molecular biology: 383 out of 3,011
  • Year to date:
    • Site-wide: 32,094 out of 89,119
  • Since beginning of last month:
    • Site-wide: 39,021 out of 89,119

Thyroid hormone signaling specifies cone subtypes in human retinal organoids

developmental biology more details view paper
  • Downloaded 960 times
  • Download rankings, all-time:
    • Site-wide: 12,182 out of 89,119
    • In developmental biology: 255 out of 2,656
  • Year to date:
    • Site-wide: 40,439 out of 89,119
  • Since beginning of last month:
    • Site-wide: 58,559 out of 89,119

Correct CYFIP1 dosage is essential for synaptic inhibition and the excitatory/inhibitory balance.

neuroscience more details view paper
  • Downloaded 812 times
  • Download rankings, all-time:
    • Site-wide: 15,813 out of 89,119
    • In neuroscience: 2,575 out of 15,842
  • Year to date:
    • Site-wide: 40,515 out of 89,119
  • Since beginning of last month:
    • Site-wide: 30,413 out of 89,119

An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis

genomics more details view paper
  • Downloaded 760 times
  • Download rankings, all-time:
    • Site-wide: 17,546 out of 89,119
    • In genomics: 2,159 out of 5,683
  • Year to date:
    • Site-wide: 6,325 out of 89,119
  • Since beginning of last month:
    • Site-wide: 11,517 out of 89,119

QuASAR: Quality Assessment of Spatial Arrangement Reproducibility in Hi-C Data

bioinformatics more details view paper
  • Downloaded 747 times
  • Download rankings, all-time:
    • Site-wide: 18,017 out of 89,119
    • In bioinformatics: 2,707 out of 8,414
  • Year to date:
    • Site-wide: 31,329 out of 89,119
  • Since beginning of last month:
    • Site-wide: 49,171 out of 89,119

Genome-wide comparative analysis reveals human- mouse regulatory landscape and evolution

bioinformatics more details view paper
  • Downloaded 729 times
  • Download rankings, all-time:
    • Site-wide: 18,618 out of 89,119
    • In bioinformatics: 2,771 out of 8,414
  • Year to date:
    • Site-wide: 80,508 out of 89,119
  • Since beginning of last month:
    • Site-wide: 76,641 out of 89,119

Point of care influenza testing using Alere-i Influenza A & B assay: a practical assessment

microbiology more details view paper
  • Downloaded 723 times
  • Download rankings, all-time:
    • Site-wide: 18,866 out of 89,119
    • In microbiology: 1,169 out of 7,660
  • Year to date:
    • Site-wide: 10,963 out of 89,119
  • Since beginning of last month:
    • Site-wide: 17,518 out of 89,119

Cloud Bursting Galaxy: Federated Identity and Access Management

bioinformatics more details view paper
  • Downloaded 552 times
  • Download rankings, all-time:
    • Site-wide: 27,525 out of 89,119
    • In bioinformatics: 3,716 out of 8,414
  • Year to date:
    • Site-wide: 20,777 out of 89,119
  • Since beginning of last month:
    • Site-wide: 29,582 out of 89,119

Halophilic microbial community compositional shift after a rare rainfall in the Atacama Desert

microbiology more details view paper
  • Downloaded 533 times
  • Download rankings, all-time:
    • Site-wide: 28,747 out of 89,119
    • In microbiology: 1,866 out of 7,660
  • Year to date:
    • Site-wide: 42,090 out of 89,119
  • Since beginning of last month:
    • Site-wide: 55,802 out of 89,119

Natural variation in stochastic photoreceptor specification and color preference in Drosophila

developmental biology more details view paper
  • Downloaded 482 times
  • Download rankings, all-time:
    • Site-wide: 32,618 out of 89,119
    • In developmental biology: 913 out of 2,656
  • Year to date:
    • Site-wide: 84,345 out of 89,119
  • Since beginning of last month:
    • Site-wide: 77,654 out of 89,119

Selective Affimers Recognize BCL-2 Family Proteins Through Non-Canonical Structural Motifs

biochemistry more details view paper
  • Downloaded 427 times
  • Download rankings, all-time:
    • Site-wide: 37,625 out of 89,119
    • In biochemistry: 1,084 out of 2,978
  • Year to date:
    • Site-wide: 28,923 out of 89,119
  • Since beginning of last month:
    • Site-wide: 34,906 out of 89,119

DNA shape complements sequence-based representations of transcription factor binding sites

bioinformatics more details view paper
  • Downloaded 361 times
  • Download rankings, all-time:
    • Site-wide: 44,797 out of 89,119
    • In bioinformatics: 5,263 out of 8,414
  • Year to date:
    • Site-wide: 52,355 out of 89,119
  • Since beginning of last month:
    • Site-wide: 84,907 out of 89,119

A Single-cell RNA-seq Training and Analysis Suite using the Galaxy Framework

bioinformatics more details view paper
  • Downloaded 283 times
  • Download rankings, all-time:
    • Site-wide: 55,464 out of 89,119
    • In bioinformatics: 6,093 out of 8,414
  • Year to date:
    • Site-wide: 9,450 out of 89,119
  • Since beginning of last month:
    • Site-wide: 897 out of 89,119

Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of mouse hematopoietic cells

genomics more details view paper
  • Downloaded 249 times
  • Download rankings, all-time:
    • Site-wide: 60,741 out of 89,119
    • In genomics: 4,658 out of 5,683
  • Year to date:
    • Site-wide: 76,959 out of 89,119
  • Since beginning of last month:
    • Site-wide: 66,711 out of 89,119

Hidden dynamic signatures drive substrate selectivity in the disordered phosphoproteome

biophysics more details view paper
  • Downloaded 228 times
  • Download rankings, all-time:
    • Site-wide: 64,275 out of 89,119
    • In biophysics: 2,793 out of 3,884
  • Year to date:
    • Site-wide: 54,453 out of 89,119
  • Since beginning of last month:
    • Site-wide: 68,530 out of 89,119

Cellular life from the three domains and viruses are transcriptionally active in a hypersaline desert community

microbiology more details view paper
  • Downloaded 199 times
  • Download rankings, all-time:
    • Site-wide: 69,141 out of 89,119
    • In microbiology: 5,441 out of 7,660
  • Year to date:
    • Site-wide: 56,563 out of 89,119
  • Since beginning of last month:
    • Site-wide: 86,164 out of 89,119

PanLingua

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News