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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,545 bioRxiv papers from 297,698 authors.

Author: James Taylor

Rankings

  • All-time downloads: 28,215 (rank: 732 out of 297,698)
  • Categories:
    • biochemistry: 292 (rank: 6,768 (tie) out of 11,711)
    • bioinformatics: 13,688 (rank: 167 out of 25,897)
    • cell biology: 2,124 (rank: 975 (tie) out of 20,209)
    • developmental biology: 1,297 (rank: 1,048 out of 11,226)
    • genomics: 5,752 (rank: 2,214 (tie) out of 33,771)
    • microbiology: 3,491 (rank: 379 out of 30,678)
    • molecular biology: 864 (rank: 2,605 (tie) out of 14,231)
    • neuroscience: 707 (rank: 15,422 (tie) out of 49,729)

Downloads per author, site-wide

Preprints

Hidden dynamic signatures drive substrate selectivity in the disordered phosphoproteome

biophysics more details view paper

No bioRxiv download data for this paper yet.

Bioconda: A sustainable and comprehensive software distribution for the life sciences

bioinformatics more details view paper
  • Downloaded 4,646 times
  • Download rankings, all-time:
    • Site-wide: 503 out of 67,545
    • In bioinformatics: 102 out of 6,650
  • Year to date:
    • Site-wide: 2,940 out of 67,545
  • Since beginning of last month:
    • Site-wide: 12,622 out of 67,545

Practical computational reproducibility in the life sciences

bioinformatics more details view paper
  • Downloaded 2,954 times
  • Download rankings, all-time:
    • Site-wide: 1,227 out of 67,545
    • In bioinformatics: 244 out of 6,650
  • Year to date:
    • Site-wide: 22,437 out of 67,545
  • Since beginning of last month:
    • Site-wide: 49,784 out of 67,545

Measuring the reproducibility and quality of Hi-C data

genomics more details view paper
  • Downloaded 2,496 times
  • Download rankings, all-time:
    • Site-wide: 1,643 out of 67,545
    • In genomics: 362 out of 4,580
  • Year to date:
    • Site-wide: 5,068 out of 67,545
  • Since beginning of last month:
    • Site-wide: 27,986 out of 67,545

HiFive: a tool suite for easy and efficient HiC and 5C data analysis

bioinformatics more details view paper
  • Downloaded 2,457 times
  • Download rankings, all-time:
    • Site-wide: 1,703 out of 67,545
    • In bioinformatics: 340 out of 6,650
  • Year to date:
    • Site-wide: 55,210 out of 67,545
  • Since beginning of last month:
    • Site-wide: 53,113 out of 67,545

Chromosome Conformation Paints Reveal The Role Of Lamina Association In Genome Organization And Regulation

cell biology more details view paper
  • Downloaded 2,124 times
  • Download rankings, all-time:
    • Site-wide: 2,207 out of 67,545
    • In cell biology: 61 out of 3,285
  • Year to date:
    • Site-wide: 10,681 out of 67,545
  • Since beginning of last month:
    • Site-wide: 7,848 out of 67,545

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

microbiology more details view paper
  • Downloaded 1,775 times
  • Download rankings, all-time:
    • Site-wide: 3,007 out of 67,545
    • In microbiology: 81 out of 5,460
  • Year to date:
    • Site-wide: 8,220 out of 67,545
  • Since beginning of last month:
    • Site-wide: 37,469 out of 67,545

The full-length transcriptome of C. elegans using direct RNA sequencing

genomics more details view paper
  • Downloaded 1,454 times
  • Download rankings, all-time:
    • Site-wide: 4,212 out of 67,545
    • In genomics: 765 out of 4,580
  • Year to date:
    • Site-wide: 1,009 out of 67,545
  • Since beginning of last month:
    • Site-wide: 2,304 out of 67,545

Lamins organize the global three-dimensional genome from the nuclear periphery

genomics more details view paper
  • Downloaded 1,242 times
  • Download rankings, all-time:
    • Site-wide: 5,458 out of 67,545
    • In genomics: 931 out of 4,580
  • Year to date:
    • Site-wide: 13,173 out of 67,545
  • Since beginning of last month:
    • Site-wide: 10,170 out of 67,545

Community-driven data analysis training for biology

bioinformatics more details view paper
  • Downloaded 1,186 times
  • Download rankings, all-time:
    • Site-wide: 5,897 out of 67,545
    • In bioinformatics: 1,113 out of 6,650
  • Year to date:
    • Site-wide: 39,291 out of 67,545
  • Since beginning of last month:
    • Site-wide: 46,169 out of 67,545

Enhancing pre-defined workflows with ad hoc analytics using Galaxy, Docker and Jupyter

bioinformatics more details view paper
  • Downloaded 1,178 times
  • Download rankings, all-time:
    • Site-wide: 5,974 out of 67,545
    • In bioinformatics: 1,124 out of 6,650
  • Year to date:
    • Site-wide: 41,921 out of 67,545
  • Since beginning of last month:
    • Site-wide: 51,114 out of 67,545

TADs pair homologous chromosomes to promote interchromosomal gene regulation

molecular biology more details view paper
  • Downloaded 864 times
  • Download rankings, all-time:
    • Site-wide: 9,845 out of 67,545
    • In molecular biology: 294 out of 2,161
  • Year to date:
    • Site-wide: 9,010 out of 67,545
  • Since beginning of last month:
    • Site-wide: 11,787 out of 67,545

Thyroid hormone signaling specifies cone subtypes in human retinal organoids

developmental biology more details view paper
  • Downloaded 856 times
  • Download rankings, all-time:
    • Site-wide: 9,998 out of 67,545
    • In developmental biology: 223 out of 2,010
  • Year to date:
    • Site-wide: 21,369 out of 67,545
  • Since beginning of last month:
    • Site-wide: 37,774 out of 67,545

Understanding trivial challenges of microbial genomics: An assembly example

microbiology more details view paper
  • Downloaded 762 times
  • Download rankings, all-time:
    • Site-wide: 11,915 out of 67,545
    • In microbiology: 547 out of 5,460
  • Year to date:
    • Site-wide: 9,069 out of 67,545
  • Since beginning of last month:
    • Site-wide: 11,835 out of 67,545

Correct CYFIP1 dosage is essential for synaptic inhibition and the excitatory/inhibitory balance.

neuroscience more details view paper
  • Downloaded 707 times
  • Download rankings, all-time:
    • Site-wide: 13,293 out of 67,545
    • In neuroscience: 2,162 out of 12,107
  • Year to date:
    • Site-wide: 15,734 out of 67,545
  • Since beginning of last month:
    • Site-wide: 11,073 out of 67,545

QuASAR: Quality Assessment of Spatial Arrangement Reproducibility in Hi-C Data

bioinformatics more details view paper
  • Downloaded 621 times
  • Download rankings, all-time:
    • Site-wide: 15,982 out of 67,545
    • In bioinformatics: 2,477 out of 6,650
  • Year to date:
    • Site-wide: 24,965 out of 67,545
  • Since beginning of last month:
    • Site-wide: 17,769 out of 67,545

Natural variation in stochastic photoreceptor specification and color preference in Drosophila

developmental biology more details view paper
  • Downloaded 441 times
  • Download rankings, all-time:
    • Site-wide: 24,684 out of 67,545
    • In developmental biology: 663 out of 2,010
  • Year to date:
    • Site-wide: 65,680 out of 67,545
  • Since beginning of last month:
    • Site-wide: 60,893 out of 67,545

Point of care influenza testing using Alere-i Influenza A & B assay: a practical assessment

microbiology more details view paper
  • Downloaded 440 times
  • Download rankings, all-time:
    • Site-wide: 24,787 out of 67,545
    • In microbiology: 1,386 out of 5,460
  • Year to date:
    • Site-wide: 20,303 out of 67,545
  • Since beginning of last month:
    • Site-wide: 19,899 out of 67,545

Halophilic microbial community compositional shift after a rare rainfall in the Atacama Desert

microbiology more details view paper
  • Downloaded 399 times
  • Download rankings, all-time:
    • Site-wide: 27,698 out of 67,545
    • In microbiology: 1,598 out of 5,460
  • Year to date:
    • Site-wide: 17,681 out of 67,545
  • Since beginning of last month:
    • Site-wide: 42,073 out of 67,545

Cloud Bursting Galaxy: Federated Identity and Access Management

bioinformatics more details view paper
  • Downloaded 376 times
  • Download rankings, all-time:
    • Site-wide: 29,411 out of 67,545
    • In bioinformatics: 3,867 out of 6,650
  • Year to date:
    • Site-wide: 13,090 out of 67,545
  • Since beginning of last month:
    • Site-wide: 19,671 out of 67,545

An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis

genomics more details view paper
  • Downloaded 363 times
  • Download rankings, all-time:
    • Site-wide: 30,512 out of 67,545
    • In genomics: 3,035 out of 4,580
  • Year to date:
    • Site-wide: 11,206 out of 67,545
  • Since beginning of last month:
    • Site-wide: 7,449 out of 67,545

Selective Affimers Recognize BCL-2 Family Proteins Through Non-Canonical Structural Motifs

biochemistry more details view paper
  • Downloaded 292 times
  • Download rankings, all-time:
    • Site-wide: 37,360 out of 67,545
    • In biochemistry: 1,020 out of 1,988
  • Year to date:
    • Site-wide: 15,516 out of 67,545
  • Since beginning of last month:
    • Site-wide: 38,727 out of 67,545

DNA shape complements sequence-based representations of transcription factor binding sites

bioinformatics more details view paper
  • Downloaded 270 times
  • Download rankings, all-time:
    • Site-wide: 39,828 out of 67,545
    • In bioinformatics: 4,748 out of 6,650
  • Year to date:
    • Site-wide: 17,396 out of 67,545
  • Since beginning of last month:
    • Site-wide: 41,763 out of 67,545

Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of mouse hematopoietic cells

genomics more details view paper
  • Downloaded 197 times
  • Download rankings, all-time:
    • Site-wide: 49,049 out of 67,545
    • In genomics: 3,927 out of 4,580
  • Year to date:
    • Site-wide: 26,217 out of 67,545
  • Since beginning of last month:
    • Site-wide: 29,398 out of 67,545

Cellular life from the three domains and viruses are transcriptionally active in a hypersaline desert community

microbiology more details view paper
  • Downloaded 115 times
  • Download rankings, all-time:
    • Site-wide: 60,517 out of 67,545
    • In microbiology: 4,629 out of 5,460
  • Year to date:
    • Site-wide: 44,657 out of 67,545
  • Since beginning of last month:
    • Site-wide: 2,557 out of 67,545

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