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Author: Gerry Tonkin-Hill

Rankings

  • All-time downloads: 14,457 (rank: 22,540 (tie) )
  • Categories:
    • evolutionary biology: 650 (rank: 15,911 (tie) )
    • genomics: 10,663 (rank: 2,382 )
    • infectious diseases: 1,352 (rank: 30,800 (tie) )
    • microbiology: 247 (rank: 68,770 (tie) )
    • molecular biology: 697 (rank: 15,019 (tie) )

Downloads per author, site-wide

Preprints

Patterns of within-host genetic diversity in SARS-CoV-2

genomics more details view paper
  • Downloaded 2,142 times
  • Download rankings, all-time:
    • Site-wide: 11,777
    • In genomics: 1,057
  • Year to date:
    • Site-wide: 86,505
  • Since beginning of last month:
    • Site-wide: 118,052

Fast and flexible bacterial genomic epidemiology with PopPUNK

genomics more details view paper
  • Downloaded 1,763 times
  • Download rankings, all-time:
    • Site-wide: 15,791
    • In genomics: 1,412
  • Year to date:
    • Site-wide: 96,846
  • Since beginning of last month:
    • Site-wide: 56,119

Producing Polished Prokaryotic Pangenomes with the Panaroo Pipeline

genomics more details view paper
  • Downloaded 1,639 times
  • Download rankings, all-time:
    • Site-wide: 17,675
    • In genomics: 1,597
  • Year to date:
    • Site-wide: 66,537
  • Since beginning of last month:
    • Site-wide: 51,454

Genomic epidemiology of COVID-19 in care homes in the East of England

infectious diseases more details view paper
  • Downloaded 1,393 times
  • Download rankings, all-time:
    • Site-wide: 22,911
    • In infectious diseases: 2,444
  • Year to date:
    • Site-wide: 28,846
  • Since beginning of last month:
    • Site-wide: 43,918

Genome-wide epistasis and co-selection study using mutual information

genomics more details view paper
  • Downloaded 1,153 times
  • Download rankings, all-time:
    • Site-wide: 30,836
    • In genomics: 2,511
  • Year to date:
    • Site-wide: 171,817
  • Since beginning of last month:
    • Site-wide: 144,020

Fast Hierarchical Bayesian Analysis of Population Structure

genomics more details view paper
  • Downloaded 1,140 times
  • Download rankings, all-time:
    • Site-wide: 31,416
    • In genomics: 2,555
  • Year to date:
    • Site-wide: 142,901
  • Since beginning of last month:
    • Site-wide: 105,130

A comprehensive and high-quality collection of E. coli genomes and their genes

genomics more details view paper
  • Downloaded 967 times
  • Download rankings, all-time:
    • Site-wide: 40,446
    • In genomics: 3,078
  • Year to date:
    • Site-wide: 106,762
  • Since beginning of last month:
    • Site-wide: 171,410

Direct ex vivo gene expression profiling of malaria patients reveals common virulence gene expression in first-time infected patients and severe cases

molecular biology more details view paper
  • Downloaded 720 times
  • Download rankings, all-time:
    • Site-wide: 62,836
    • In molecular biology: 1,748
  • Year to date:
    • Site-wide: 48,539
  • Since beginning of last month:
    • Site-wide: 111,927

Pneumococcal within-host diversity during colonisation, transmission and treatment

genomics more details view paper
  • Downloaded 718 times
  • Download rankings, all-time:
    • Site-wide: 63,024
    • In genomics: 5,082
  • Year to date:
    • Site-wide: 5,882
  • Since beginning of last month:
    • Site-wide: 9,646

rPinecone: Define sub-lineages of a clonal expansion via a phylogenetic tree

genomics more details view paper
  • Downloaded 600 times
  • Download rankings, all-time:
    • Site-wide: 80,321
    • In genomics: 5,128
  • Year to date:
    • Site-wide: 180,885
  • Since beginning of last month:
    • Site-wide: 94,656

Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe

evolutionary biology more details view paper
  • Downloaded 518 times
  • Download rankings, all-time:
    • Site-wide: 96,307
    • In evolutionary biology: 5,571
  • Year to date:
    • Site-wide: 10,077
  • Since beginning of last month:
    • Site-wide: 9,042

Genome-wide association, prediction and heritability in bacteria

genomics more details view paper
  • Downloaded 506 times
  • Download rankings, all-time:
    • Site-wide: 98,698
    • In genomics: 6,199
  • Year to date:
    • Site-wide: 44,557
  • Since beginning of last month:
    • Site-wide: 33,044

Mandrake: visualising microbial population structure by embedding millions of genomes into a low-dimensional representation

genomics more details view paper
  • Downloaded 482 times
  • Download rankings, all-time:
    • Site-wide: 104,299
    • In genomics: 6,433
  • Year to date:
    • Site-wide: 48,070
  • Since beginning of last month:
    • Site-wide: 74,599

Mutational spectra analysis reveals bacterial niche and transmission routes

microbiology more details view paper
  • Downloaded 437 times
  • Download rankings, all-time:
    • Site-wide: 115,292
    • In microbiology: 11,716
  • Year to date:
    • Site-wide: 13,501
  • Since beginning of last month:
    • Site-wide: 5,791

A scalable method for identifying recombinants from unaligned sequences

evolutionary biology more details view paper
  • Downloaded 279 times
  • Download rankings, all-time:
    • Site-wide: 160,718
    • In evolutionary biology: 7,204
  • Year to date:
    • Site-wide: 177,336
  • Since beginning of last month:
    • Site-wide: 154,446

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