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Author: Yun Li

Rankings

  • All-time downloads: 54,780 (rank: 2,378 )
  • Categories:
    • biochemistry: 135 (rank: 21,308 (tie) )
    • bioinformatics: 15,186 (rank: 366 )
    • cell biology: 497 (rank: 17,376 (tie) )
    • developmental biology: 341 (rank: 12,054 (tie) )
    • epidemiology: 3,194 (rank: 3,262 )
    • genetic and genomic medicine: 1,949 (rank: 652 (tie) )
    • genetics: 22,718 (rank: 359 )
    • genomics: 6,182 (rank: 3,319 )
    • hematology: 378 (rank: 477 (tie) )
    • microbiology: 1,202 (rank: 10,626 (tie) )
    • neuroscience: 1,915 (rank: 10,635 (tie) )
    • scientific communication and education: 1,083 (rank: 774 (tie) )

Downloads per author, site-wide

Preprints

VAMPIRE: A model blood cell trait focused annotation tool for interpretation and prioritization of complex trait genome-wide association study results

genetics more details view paper

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Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression

genetics more details view paper
  • Downloaded 9,361 times
  • Download rankings, all-time:
    • Site-wide: 812
    • In genetics: 25
  • Year to date:
    • Site-wide: 22,219
  • Since beginning of last month:
    • Site-wide: 22,219

The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions

bioinformatics more details view paper
  • Downloaded 2,908 times
  • Download rankings, all-time:
    • Site-wide: 4,000
    • In bioinformatics: 430
  • Year to date:
    • Site-wide: 66,605
  • Since beginning of last month:
    • Site-wide: 66,605

An epigenetic biomarker of aging for lifespan and healthspan

epidemiology more details view paper
  • Downloaded 2,895 times
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    • Site-wide: 4,023
    • In epidemiology: 371
  • Year to date:
    • Site-wide: 32,245
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    • Site-wide: 32,245

Multi-epitope vaccine design using an immunoinformatics approach for 2019 novel coronavirus (SARS-CoV-2)

bioinformatics more details view paper
  • Downloaded 2,797 times
  • Download rankings, all-time:
    • Site-wide: 4,226
    • In bioinformatics: 459
  • Year to date:
    • Site-wide: 11,449
  • Since beginning of last month:
    • Site-wide: 11,449

SAFE-clustering: Single-cell Aggregated (From Ensemble) Clustering for Single-cell RNA-seq Data

bioinformatics more details view paper
  • Downloaded 2,794 times
  • Download rankings, all-time:
    • Site-wide: 4,237
    • In bioinformatics: 460
  • Year to date:
    • Site-wide: 38,522
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    • Site-wide: 38,522

Trans-ethnic and ancestry-specific blood-cell genetics in 746,667 individuals from 5 global populations

genetics more details view paper
  • Downloaded 2,222 times
  • Download rankings, all-time:
    • Site-wide: 5,940
    • In genetics: 286
  • Year to date:
    • Site-wide: 5,362
  • Since beginning of last month:
    • Site-wide: 5,362

Using three-dimensional regulatory chromatin interactions from adult and fetal cortex to interpret genetic results for psychiatric disorders and cognitive traits

genetics more details view paper
  • Downloaded 2,154 times
  • Download rankings, all-time:
    • Site-wide: 6,210
    • In genetics: 307
  • Year to date:
    • Site-wide: 7,741
  • Since beginning of last month:
    • Site-wide: 7,741

The Polygenic and Monogenic Basis of Blood Traits and Diseases

genetic and genomic medicine more details view paper
  • Downloaded 1,949 times
  • Download rankings, all-time:
    • Site-wide: 7,187
    • In genetic and genomic medicine: 20
  • Year to date:
    • Site-wide: 21,230
  • Since beginning of last month:
    • Site-wide: 21,230

Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n=17,706)

genetics more details view paper
  • Downloaded 1,661 times
  • Download rankings, all-time:
    • Site-wide: 9,194
    • In genetics: 455
  • Year to date:
    • Site-wide: 51,222
  • Since beginning of last month:
    • Site-wide: 51,222

3D Epigenomic Characterization Reveals Insights Into Gene Regulation and Lineage Specification During Corticogenesis

genomics more details view paper
  • Downloaded 1,546 times
  • Download rankings, all-time:
    • Site-wide: 10,189
    • In genomics: 1,131
  • Year to date:
    • Site-wide: 25,495
  • Since beginning of last month:
    • Site-wide: 25,495

Common DNA sequence variation influences 3-dimensional conformation of the human genome

genomics more details view paper
  • Downloaded 1,477 times
  • Download rankings, all-time:
    • Site-wide: 10,889
    • In genomics: 1,207
  • Year to date:
    • Site-wide: 108,830
  • Since beginning of last month:
    • Site-wide: 108,830

SCDC: Bulk Gene Expression Deconvolution by Multiple Single-Cell RNA Sequencing References

bioinformatics more details view paper
  • Downloaded 1,293 times
  • Download rankings, all-time:
    • Site-wide: 13,295
    • In bioinformatics: 1,637
  • Year to date:
    • Site-wide: 51,697
  • Since beginning of last month:
    • Site-wide: 51,697

Robust Hi-C chromatin loop maps in human neurogenesis and brain tissues at high-resolution

genomics more details view paper
  • Downloaded 1,232 times
  • Download rankings, all-time:
    • Site-wide: 14,323
    • In genomics: 1,521
  • Year to date:
    • Site-wide: 10,229
  • Since beginning of last month:
    • Site-wide: 10,229

The intestinal microbiota programs diurnal rhythms in host metabolism through histone deacetylase 3

microbiology more details view paper
  • Downloaded 1,202 times
  • Download rankings, all-time:
    • Site-wide: 14,872
    • In microbiology: 835
  • Year to date:
    • Site-wide: 77,079
  • Since beginning of last month:
    • Site-wide: 77,079

SMNN: Batch Effect Correction for Single-cell RNA-seq data via Supervised Mutual Nearest Neighbor Detection

bioinformatics more details view paper
  • Downloaded 1,194 times
  • Download rankings, all-time:
    • Site-wide: 15,015
    • In bioinformatics: 1,845
  • Year to date:
    • Site-wide: 32,576
  • Since beginning of last month:
    • Site-wide: 32,576

MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

bioinformatics more details view paper
  • Downloaded 1,143 times
  • Download rankings, all-time:
    • Site-wide: 16,047
    • In bioinformatics: 1,971
  • Year to date:
    • Site-wide: 81,670
  • Since beginning of last month:
    • Site-wide: 81,670

The Big Five, Self-efficacy, and Self-control in Boxers

scientific communication and education more details view paper
  • Downloaded 1,083 times
  • Download rankings, all-time:
    • Site-wide: 17,406
    • In scientific communication and education: 142
  • Year to date:
    • Site-wide: 18,197
  • Since beginning of last month:
    • Site-wide: 18,197

A Possible Role Of Microglia In Zika Virus Infection Of The Fetal Human Brain

neuroscience more details view paper
  • Downloaded 1,009 times
  • Download rankings, all-time:
    • Site-wide: 19,374
    • In neuroscience: 2,472
  • Year to date:
    • Site-wide: 78,214
  • Since beginning of last month:
    • Site-wide: 78,214

MOSTWAS: Multi-Omic Strategies for Transcriptome-Wide Association Studies

genetics more details view paper
  • Downloaded 960 times
  • Download rankings, all-time:
    • Site-wide: 20,746
    • In genetics: 1,025
  • Year to date:
    • Site-wide: 17,953
  • Since beginning of last month:
    • Site-wide: 17,953

Neuronal and glial 3D chromatin architecture illustrates cellular etiology of brain disorders

neuroscience more details view paper
  • Downloaded 906 times
  • Download rankings, all-time:
    • Site-wide: 22,529
    • In neuroscience: 2,963
  • Year to date:
    • Site-wide: 13,666
  • Since beginning of last month:
    • Site-wide: 13,666

Common genetic variation influencing human white matter microstructure

genetics more details view paper
  • Downloaded 876 times
  • Download rankings, all-time:
    • Site-wide: 23,672
    • In genetics: 1,177
  • Year to date:
    • Site-wide: 12,832
  • Since beginning of last month:
    • Site-wide: 12,832

GWAS of 19,629 individuals identifies novel genetic variants for regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits

genetics more details view paper
  • Downloaded 874 times
  • Download rankings, all-time:
    • Site-wide: 23,752
    • In genetics: 1,182
  • Year to date:
    • Site-wide: 50,986
  • Since beginning of last month:
    • Site-wide: 50,986

GWAS of epigenetic ageing rates in blood reveals a critical role for TERT

genetics more details view paper
  • Downloaded 815 times
  • Download rankings, all-time:
    • Site-wide: 26,186
    • In genetics: 1,307
  • Year to date:
    • Site-wide: 100,414
  • Since beginning of last month:
    • Site-wide: 100,414

Heritability of regional brain volumes in large-scale neuroimaging and genetic studies

genetics more details view paper
  • Downloaded 808 times
  • Download rankings, all-time:
    • Site-wide: 26,503
    • In genetics: 1,326
  • Year to date:
    • Site-wide: 72,801
  • Since beginning of last month:
    • Site-wide: 72,801

Transcriptome-wide association analysis of 211 neuroimaging traits identifies new genes for brain structures and yields insights into the gene-level pleiotropy with other complex traits

genetics more details view paper
  • Downloaded 789 times
  • Download rankings, all-time:
    • Site-wide: 27,387
    • In genetics: 1,363
  • Year to date:
    • Site-wide: 15,041
  • Since beginning of last month:
    • Site-wide: 15,041

HUGIn: Hi-C Unifying Genomic Interrogator

genetics more details view paper
  • Downloaded 730 times
  • Download rankings, all-time:
    • Site-wide: 30,553
    • In genetics: 1,520
  • Year to date:
    • Site-wide: 84,137
  • Since beginning of last month:
    • Site-wide: 84,137

Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations

genomics more details view paper
  • Downloaded 660 times
  • Download rankings, all-time:
    • Site-wide: 35,014
    • In genomics: 3,063
  • Year to date:
    • Site-wide: 48,623
  • Since beginning of last month:
    • Site-wide: 48,623

MRLocus: identifying causal genes mediating a trait through Bayesian estimation of allelic heterogeneity

bioinformatics more details view paper
  • Downloaded 645 times
  • Download rankings, all-time:
    • Site-wide: 36,139
    • In bioinformatics: 4,021
  • Year to date:
    • Site-wide: 21,315
  • Since beginning of last month:
    • Site-wide: 21,315

Multi-SNP Mediation Intersection-Union Test

genetics more details view paper
  • Downloaded 616 times
  • Download rankings, all-time:
    • Site-wide: 38,332
    • In genetics: 1,876
  • Year to date:
    • Site-wide: 61,296
  • Since beginning of last month:
    • Site-wide: 61,296

SAME-clustering: Single-cell Aggregated Clustering via Mixture Model Ensemble

bioinformatics more details view paper
  • Downloaded 616 times
  • Download rankings, all-time:
    • Site-wide: 38,347
    • In bioinformatics: 4,219
  • Year to date:
    • Site-wide: 105,009
  • Since beginning of last month:
    • Site-wide: 105,009

TWO-SIGMA: a novel TWO-component SInGle cell Model-based Association method for single-cell RNA-seq data

genomics more details view paper
  • Downloaded 554 times
  • Download rankings, all-time:
    • Site-wide: 43,749
    • In genomics: 3,582
  • Year to date:
    • Site-wide: 47,791
  • Since beginning of last month:
    • Site-wide: 47,791

Association between ApoE polymorphism and type 2 diabetes: A meta-analysis of 59 studies

genetics more details view paper
  • Downloaded 524 times
  • Download rankings, all-time:
    • Site-wide: 46,793
    • In genetics: 2,246
  • Year to date:
    • Site-wide: 43,283
  • Since beginning of last month:
    • Site-wide: 43,283

FIREcaller: Detecting Frequently Interacting Regions from Hi-C Data

bioinformatics more details view paper
  • Downloaded 515 times
  • Download rankings, all-time:
    • Site-wide: 47,753
    • In bioinformatics: 5,008
  • Year to date:
    • Site-wide: 47,759
  • Since beginning of last month:
    • Site-wide: 47,759

Overarching control of autophagy and DNA damage response by CHD6 revealed by modeling a rare human pathology

cell biology more details view paper
  • Downloaded 497 times
  • Download rankings, all-time:
    • Site-wide: 49,819
    • In cell biology: 2,172
  • Year to date:
    • Site-wide: 44,919
  • Since beginning of last month:
    • Site-wide: 44,919

SnapHiC: a computational pipeline to map chromatin contacts from single cell Hi-C data

bioinformatics more details view paper
  • Downloaded 426 times
  • Download rankings, all-time:
    • Site-wide: 58,918
    • In bioinformatics: 5,882
  • Year to date:
    • Site-wide: 5,356
  • Since beginning of last month:
    • Site-wide: 5,356

Methylome-Wide Association Study Of Central Adiposity Implicates Genes Involved In Immune And Endocrine Systems

genomics more details view paper
  • Downloaded 391 times
  • Download rankings, all-time:
    • Site-wide: 64,054
    • In genomics: 4,629
  • Year to date:
    • Site-wide: 77,473
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    • Site-wide: 77,473

Whole genome sequencing association analysis of quantitative red blood cell phenotypes: the NHLBI TOPMed program

hematology more details view paper
  • Downloaded 378 times
  • Download rankings, all-time:
    • Site-wide: 66,278
    • In hematology: 40
  • Year to date:
    • Site-wide: 4,303
  • Since beginning of last month:
    • Site-wide: 4,303

Generation of Cynomolgus Monkeys (Macaca fascicularis) Embryos with ICSI Based on the MII-Stage Oocytes Acquired by Personalized Superovulation Protocol

developmental biology more details view paper
  • Downloaded 341 times
  • Download rankings, all-time:
    • Site-wide: 72,402
    • In developmental biology: 1,912
  • Year to date:
    • Site-wide: 68,063
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    • Site-wide: 68,063

Integrative methylome and transcriptome analysis of Japanese flounder (Paralichthys olivaceus) skeletal muscle during development

epidemiology more details view paper
  • Downloaded 299 times
  • Download rankings, all-time:
    • Site-wide: 80,387
    • In epidemiology: 3,294
  • Year to date:
    • Site-wide: 104,750
  • Since beginning of last month:
    • Site-wide: 104,750

Generalized Multi-SNP Mediation Intersection-Union Test

genetics more details view paper
  • Downloaded 239 times
  • Download rankings, all-time:
    • Site-wide: 92,972
    • In genetics: 4,251
  • Year to date:
    • Site-wide: 98,980
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    • Site-wide: 98,980

Characterizing sensitivity and coverage of clinical WGS as a diagnostic test for genetic disorders

genomics more details view paper
  • Downloaded 237 times
  • Download rankings, all-time:
    • Site-wide: 93,491
    • In genomics: 5,750
  • Year to date:
    • Site-wide: 26,436
  • Since beginning of last month:
    • Site-wide: 26,436

iSMNN: Batch Effect Correction for Single-cell RNA-seq data via Iterative Supervised Mutual Nearest Neighbor Refinement

bioinformatics more details view paper
  • Downloaded 235 times
  • Download rankings, all-time:
    • Site-wide: 93,830
    • In bioinformatics: 8,218
  • Year to date:
    • Site-wide: 8,889
  • Since beginning of last month:
    • Site-wide: 8,889

THUNDER: A reference-free deconvolution method to infer cell type proportions from bulk Hi-C data

bioinformatics more details view paper
  • Downloaded 219 times
  • Download rankings, all-time:
    • Site-wide: 97,353
    • In bioinformatics: 8,426
  • Year to date:
    • Site-wide: 31,628
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    • Site-wide: 31,628

CUE: CpG impUtation Ensemble for DNA Methylation Levels Across the Human Methylation450 (HM450) and EPIC (HM850) BeadChip Platforms

bioinformatics more details view paper
  • Downloaded 213 times
  • Download rankings, all-time:
    • Site-wide: 98,578
    • In bioinformatics: 8,510
  • Year to date:
    • Site-wide: 44,856
  • Since beginning of last month:
    • Site-wide: 44,856

HiC-ACT: Improved Detection of Chromatin Interactions from Hi-C Data via Aggregated Cauchy Test

bioinformatics more details view paper
  • Downloaded 188 times
  • Download rankings, all-time:
    • Site-wide: 104,114
    • In bioinformatics: 8,820
  • Year to date:
    • Site-wide: 33,368
  • Since beginning of last month:
    • Site-wide: 33,368

Genome engineering of Nannochloropsis with large deletions for constructing microalgal minigenomes

biochemistry more details view paper
  • Downloaded 135 times
  • Download rankings, all-time:
    • Site-wide: 114,444
    • In biochemistry: 3,428
  • Year to date:
    • Site-wide: 65,433
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    • Site-wide: 65,433

eSCAN: Scan Regulatory Regions for Aggregate Association Testing using Whole Genome Sequencing Data

genetics more details view paper
  • Downloaded 89 times
  • Download rankings, all-time:
    • Site-wide: 122,541
    • In genetics: 5,237
  • Year to date:
    • Site-wide: 46,116
  • Since beginning of last month:
    • Site-wide: 46,116

HPRep: Quantifying reproducibility in HiChIP and PLAC-seq datasets

genomics more details view paper
  • Downloaded 85 times
  • Download rankings, all-time:
    • Site-wide: 122,992
    • In genomics: 6,623
  • Year to date:
    • Site-wide: 57,595
  • Since beginning of last month:
    • Site-wide: 57,595

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