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Author: Yun Li

Rankings

  • All-time downloads: 82,620 (rank: 2,889 )
  • Categories:
    • biochemistry: 295 (rank: 27,761 (tie) )
    • bioinformatics: 18,965 (rank: 459 )
    • cell biology: 860 (rank: 17,917 (tie) )
    • developmental biology: 519 (rank: 15,320 (tie) )
    • epidemiology: 3,632 (rank: 5,328 (tie) )
    • genetic and genomic medicine: 4,411 (rank: 1,182 )
    • genetics: 30,951 (rank: 258 )
    • genomics: 10,547 (rank: 2,414 )
    • health policy: 452 (rank: 1,530 (tie) )
    • hematology: 953 (rank: 650 (tie) )
    • immunology: 1,202 (rank: 15,125 (tie) )
    • microbiology: 1,399 (rank: 16,558 (tie) )
    • neuroscience: 2,524 (rank: 13,789 (tie) )
    • pharmacology and therapeutics: 401 (rank: 1,182 (tie) )
    • psychiatry and clinical psychology: 177 (rank: 9,145 (tie) )
    • scientific communication and education: 1,571 (rank: 697 (tie) )

Downloads per author, site-wide

Preprints

Uncovering Cross-Cohort Molecular Features with Multi-Omics Integration Analysis

genomics more details view paper

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Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression

genetics more details view paper
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    • Site-wide: 1,376
    • In genetics: 27
  • Year to date:
    • Site-wide: 39,698
  • Since beginning of last month:
    • Site-wide: 24,477

Multi-epitope vaccine design using an immunoinformatics approach for 2019 novel coronavirus (SARS-CoV-2)

bioinformatics more details view paper
  • Downloaded 3,355 times
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    • Site-wide: 6,041
    • In bioinformatics: 533
  • Year to date:
    • Site-wide: 58,663
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    • Site-wide: 152,924

An epigenetic biomarker of aging for lifespan and healthspan

epidemiology more details view paper
  • Downloaded 3,267 times
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    • Site-wide: 6,278
    • In epidemiology: 575
  • Year to date:
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    • Site-wide: 36,076

Using three-dimensional regulatory chromatin interactions from adult and fetal cortex to interpret genetic results for psychiatric disorders and cognitive traits

genetics more details view paper
  • Downloaded 3,186 times
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    • Site-wide: 6,530
    • In genetics: 246
  • Year to date:
    • Site-wide: 10,859
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    • Site-wide: 8,451

The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions

bioinformatics more details view paper
  • Downloaded 3,153 times
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    • Site-wide: 6,634
    • In bioinformatics: 592
  • Year to date:
    • Site-wide: 94,972
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    • Site-wide: 100,583

Trans-ethnic and ancestry-specific blood-cell genetics in 746,667 individuals from 5 global populations

genetics more details view paper
  • Downloaded 3,118 times
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    • Site-wide: 6,738
    • In genetics: 237
  • Year to date:
    • Site-wide: 135,094
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    • Site-wide: 152,260

SAFE-clustering: Single-cell Aggregated (From Ensemble) Clustering for Single-cell RNA-seq Data

bioinformatics more details view paper
  • Downloaded 3,086 times
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    • Site-wide: 6,839
    • In bioinformatics: 614
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    • Site-wide: 108,100
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    • Site-wide: 64,798

3D Epigenomic Characterization Reveals Insights Into Gene Regulation and Lineage Specification During Corticogenesis

genomics more details view paper
  • Downloaded 2,414 times
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    • Site-wide: 9,774
    • In genomics: 944
  • Year to date:
    • Site-wide: 19,474
  • Since beginning of last month:
    • Site-wide: 15,466

The Polygenic and Monogenic Basis of Blood Traits and Diseases

genetic and genomic medicine more details view paper
  • Downloaded 2,229 times
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    • Site-wide: 11,042
    • In genetic and genomic medicine: 61
  • Year to date:
    • Site-wide: 133,176
  • Since beginning of last month:
    • Site-wide: 133,021

Common genetic variation influencing human white matter microstructure

genetics more details view paper
  • Downloaded 1,991 times
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    • Site-wide: 13,073
    • In genetics: 514
  • Year to date:
    • Site-wide: 31,091
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    • Site-wide: 31,124

Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n=17,706)

genetics more details view paper
  • Downloaded 1,873 times
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    • Site-wide: 14,356
    • In genetics: 561
  • Year to date:
    • Site-wide: 126,728
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    • Site-wide: 65,250

The Big Five, Self-efficacy, and Self-control in Boxers

scientific communication and education more details view paper
  • Downloaded 1,760 times
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    • Site-wide: 15,812
    • In scientific communication and education: 130
  • Year to date:
    • Site-wide: 16,751
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    • Site-wide: 3,374

Robust Hi-C chromatin loop maps in human neurogenesis and brain tissues at high-resolution

genomics more details view paper
  • Downloaded 1,690 times
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    • Site-wide: 16,781
    • In genomics: 1,513
  • Year to date:
    • Site-wide: 68,379
  • Since beginning of last month:
    • Site-wide: 36,522

SCDC: Bulk Gene Expression Deconvolution by Multiple Single-Cell RNA Sequencing References

bioinformatics more details view paper
  • Downloaded 1,658 times
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    • Site-wide: 17,341
    • In bioinformatics: 1,817
  • Year to date:
    • Site-wide: 55,842
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    • Site-wide: 160,295

Common DNA sequence variation influences 3-dimensional conformation of the human genome

genomics more details view paper
  • Downloaded 1,581 times
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    • Site-wide: 18,654
    • In genomics: 1,633
  • Year to date:
    • Site-wide: 180,462
  • Since beginning of last month:
    • Site-wide: 117,141

SMNN: Batch Effect Correction for Single-cell RNA-seq data via Supervised Mutual Nearest Neighbor Detection

bioinformatics more details view paper
  • Downloaded 1,544 times
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    • Site-wide: 19,382
    • In bioinformatics: 2,081
  • Year to date:
    • Site-wide: 79,919
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    • Site-wide: 58,307

The intestinal microbiota programs diurnal rhythms in host metabolism through histone deacetylase 3

microbiology more details view paper
  • Downloaded 1,424 times
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    • Site-wide: 22,041
    • In microbiology: 1,236
  • Year to date:
    • Site-wide: 106,125
  • Since beginning of last month:
    • Site-wide: 180,187

MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

bioinformatics more details view paper
  • Downloaded 1,405 times
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    • Site-wide: 22,555
    • In bioinformatics: 2,412
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    • Site-wide: 84,433
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    • Site-wide: 65,040

Macrophages regulate gastrointestinal motility through complement component 1q

immunology more details view paper
  • Downloaded 1,349 times
  • Download rankings, all-time:
    • Site-wide: 24,043
    • In immunology: 987
  • Year to date:
    • Site-wide: 2,120
  • Since beginning of last month:
    • Site-wide: 11,151

Neuronal and glial 3D chromatin architecture illustrates cellular etiology of brain disorders

neuroscience more details view paper
  • Downloaded 1,276 times
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    • Site-wide: 26,280
    • In neuroscience: 3,122
  • Year to date:
    • Site-wide: 95,292
  • Since beginning of last month:
    • Site-wide: 189,604

A comprehensive comparison on cell type composition inference for spatial transcriptomics data

genetics more details view paper
  • Downloaded 1,197 times
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    • Site-wide: 29,051
    • In genetics: 1,593
  • Year to date:
    • Site-wide: 2,545
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    • Site-wide: 3,278

MOSTWAS: Multi-Omic Strategies for Transcriptome-Wide Association Studies

genetics more details view paper
  • Downloaded 1,151 times
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    • Site-wide: 30,892
    • In genetics: 1,229
  • Year to date:
    • Site-wide: 123,724
  • Since beginning of last month:
    • Site-wide: 70,315

Parallel Characterization of cis-Regulatory Elements for Multiple Genes Using CRISPRpath

genomics more details view paper
  • Downloaded 1,149 times
  • Download rankings, all-time:
    • Site-wide: 31,014
    • In genomics: 2,544
  • Year to date:
    • Site-wide: 39,066
  • Since beginning of last month:
    • Site-wide: 90,986

A Possible Role Of Microglia In Zika Virus Infection Of The Fetal Human Brain

neuroscience more details view paper
  • Downloaded 1,128 times
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    • Site-wide: 31,904
    • In neuroscience: 3,764
  • Year to date:
    • Site-wide: 188,146
  • Since beginning of last month:
    • Site-wide: 192,005

GWAS of 19,629 individuals identifies novel genetic variants for regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits

genetics more details view paper
  • Downloaded 1,090 times
  • Download rankings, all-time:
    • Site-wide: 33,627
    • In genetics: 1,353
  • Year to date:
    • Site-wide: 111,053
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    • Site-wide: 36,131

Transcriptome-wide association analysis of 211 neuroimaging traits identifies new genes for brain structures and yields insights into the gene-level pleiotropy with other complex traits

genetics more details view paper
  • Downloaded 1,055 times
  • Download rankings, all-time:
    • Site-wide: 35,297
    • In genetics: 1,388
  • Year to date:
    • Site-wide: 119,680
  • Since beginning of last month:
    • Site-wide: 129,078

Whole genome sequencing association analysis of quantitative red blood cell phenotypes: the NHLBI TOPMed program

hematology more details view paper
  • Downloaded 994 times
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    • Site-wide: 38,655
    • In hematology: 40
  • Year to date:
    • Site-wide: 73,829
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    • Site-wide: 106,244

MRLocus: identifying causal genes mediating a trait through Bayesian estimation of allelic heterogeneity

bioinformatics more details view paper
  • Downloaded 952 times
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    • Site-wide: 41,329
    • In bioinformatics: 4,197
  • Year to date:
    • Site-wide: 128,287
  • Since beginning of last month:
    • Site-wide: 71,976

SnapHiC: a computational pipeline to map chromatin contacts from single cell Hi-C data

bioinformatics more details view paper
  • Downloaded 925 times
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    • Site-wide: 43,239
    • In bioinformatics: 4,363
  • Year to date:
    • Site-wide: 107,047
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    • Site-wide: 177,847

Heritability of regional brain volumes in large-scale neuroimaging and genetic studies

genetics more details view paper
  • Downloaded 912 times
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    • Site-wide: 44,141
    • In genetics: 1,706
  • Year to date:
    • Site-wide: 159,582
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    • Site-wide: 120,034

GWAS of epigenetic ageing rates in blood reveals a critical role for TERT

genetics more details view paper
  • Downloaded 900 times
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    • Site-wide: 45,026
    • In genetics: 1,721
  • Year to date:
    • Site-wide: 208,556
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    • Site-wide: 162,445

Genetic control of fetal placental genomics contributes to development of health and disease

genetic and genomic medicine more details view paper
  • Downloaded 897 times
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    • Site-wide: 45,212
    • In genetic and genomic medicine: 262
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    • Site-wide: 22,128
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TWO-SIGMA: a novel TWO-component SInGle cell Model-based Association method for single-cell RNA-seq data

genomics more details view paper
  • Downloaded 891 times
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    • Site-wide: 45,707
    • In genomics: 3,419
  • Year to date:
    • Site-wide: 93,386
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HUGIn: Hi-C Unifying Genomic Interrogator

genetics more details view paper
  • Downloaded 796 times
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    • Site-wide: 54,236
    • In genetics: 2,087
  • Year to date:
    • Site-wide: 194,633
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    • Site-wide: 157,356

Multi-SNP Mediation Intersection-Union Test

genetics more details view paper
  • Downloaded 779 times
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    • Site-wide: 55,935
    • In genetics: 2,104
  • Year to date:
    • Site-wide: 208,223
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    • Site-wide: 205,186

From GWAS Variant to Function: a Study of ~148,000 Variants for Blood Cell Traits.

genetics more details view paper
  • Downloaded 758 times
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    • Site-wide: 58,185
    • In genetics: 2,249
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    • Site-wide: 22,103
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    • Site-wide: 97,869

Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations

genomics more details view paper
  • Downloaded 755 times
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    • Site-wide: 58,556
    • In genomics: 4,067
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    • Site-wide: 177,353
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    • Site-wide: 82,843

Association between ApoE polymorphism and type 2 diabetes: A meta-analysis of 59 studies

genetics more details view paper
  • Downloaded 745 times
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    • Site-wide: 59,712
    • In genetics: 2,303
  • Year to date:
    • Site-wide: 141,804
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Overarching control of autophagy and DNA damage response by CHD6 revealed by modeling a rare human pathology

cell biology more details view paper
  • Downloaded 735 times
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    • Site-wide: 60,937
    • In cell biology: 2,524
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    • Site-wide: 145,945
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    • Site-wide: 127,829

SAME-clustering: Single-cell Aggregated Clustering via Mixture Model Ensemble

bioinformatics more details view paper
  • Downloaded 711 times
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    • Site-wide: 63,780
    • In bioinformatics: 5,908
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    • Site-wide: 187,723
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    • Site-wide: 154,763

TWO-SIGMA-G: A New Competitive Gene Set Testing Framework for scRNA-seq Data Accounting for Inter-Gene and Cell-Cell Correlation

genomics more details view paper
  • Downloaded 657 times
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    • Site-wide: 71,371
    • In genomics: 4,831
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FIREcaller: Detecting Frequently Interacting Regions from Hi-C Data

bioinformatics more details view paper
  • Downloaded 656 times
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    • Site-wide: 71,512
    • In bioinformatics: 6,589
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    • Site-wide: 161,105
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    • Site-wide: 118,146

iSMNN: Batch Effect Correction for Single-cell RNA-seq data via Iterative Supervised Mutual Nearest Neighbor Refinement

bioinformatics more details view paper
  • Downloaded 636 times
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    • Site-wide: 74,593
    • In bioinformatics: 6,718
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    • Site-wide: 55,396
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    • Site-wide: 188,795

Methylome-Wide Association Study Of Central Adiposity Implicates Genes Involved In Immune And Endocrine Systems

genomics more details view paper
  • Downloaded 633 times
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    • Site-wide: 75,044
    • In genomics: 4,881
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    • Site-wide: 177,851
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    • Site-wide: 143,338

A large-scale transcriptome-wide association study (TWAS) of ten blood cell phenotypes reveals complexities of TWAS fine-mapping

genetics more details view paper
  • Downloaded 625 times
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    • Site-wide: 76,246
    • In genetics: 3,509
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    • Site-wide: 31,113
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    • Site-wide: 53,874

Genetic influences on the intrinsic and extrinsic functional organizations of the cerebral cortex

genetic and genomic medicine more details view paper
  • Downloaded 607 times
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    • Site-wide: 79,060
    • In genetic and genomic medicine: 522
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    • Site-wide: 24,466
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    • Site-wide: 35,439

Generation of Cynomolgus Monkeys (Macaca fascicularis) Embryos with ICSI Based on the MII-Stage Oocytes Acquired by Personalized Superovulation Protocol

developmental biology more details view paper
  • Downloaded 546 times
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    • Site-wide: 90,193
    • In developmental biology: 2,278
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    • Site-wide: 127,187
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    • Site-wide: 85,495

Transcriptome-wide association study in UK Biobank Europeans identifies associations with blood cell traits.

genetics more details view paper
  • Downloaded 539 times
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    • Site-wide: 91,582
    • In genetics: 4,110
  • Year to date:
    • Site-wide: 20,987
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    • Site-wide: 17,706

Characterizing sensitivity and coverage of clinical WGS as a diagnostic test for genetic disorders

genomics more details view paper
  • Downloaded 538 times
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    • Site-wide: 91,799
    • In genomics: 5,694
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    • Site-wide: 92,882
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Whole genome sequencing identifies common and rare structural variants contributing to hematologic traits in the NHLBI TOPMed program

genetic and genomic medicine more details view paper
  • Downloaded 501 times
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    • Site-wide: 99,857
    • In genetic and genomic medicine: 696
  • Year to date:
    • Site-wide: 15,711
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    • Site-wide: 24,058

THUNDER: A reference-free deconvolution method to infer cell type proportions from bulk Hi-C data

bioinformatics more details view paper
  • Downloaded 486 times
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    • Site-wide: 103,319
    • In bioinformatics: 8,607
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    • Site-wide: 151,708
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    • Site-wide: 188,643

Phased implementation of COVID-19 vaccination: rapid assessment of policy adoption, reach and effectiveness to protect the most vulnerable in the US

health policy more details view paper
  • Downloaded 471 times
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    • Site-wide: 106,713
    • In health policy: 269
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    • Site-wide: 55,654
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    • Site-wide: 176,483

Integrative methylome and transcriptome analysis of Japanese flounder (Paralichthys olivaceus) skeletal muscle during development

epidemiology more details view paper
  • Downloaded 434 times
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    • Site-wide: 115,798
    • In epidemiology: 4,874
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    • Site-wide: 154,280
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    • Site-wide: 82,897

The efficacy and safety of bamlanivimab treatment against COVID-19: A meta-analysis

pharmacology and therapeutics more details view paper
  • Downloaded 427 times
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    • Site-wide: 117,545
    • In pharmacology and therapeutics: 144
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    • Site-wide: 105,990
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CUE: CpG impUtation Ensemble for DNA Methylation Levels Across the Human Methylation450 (HM450) and EPIC (HM850) BeadChip Platforms

bioinformatics more details view paper
  • Downloaded 421 times
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    • Site-wide: 119,072
    • In bioinformatics: 9,595
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Genetic Examination of Hematological Parameters in SARS-CoV-2 Infection and COVID-19

genetic and genomic medicine more details view paper
  • Downloaded 418 times
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    • Site-wide: 119,966
    • In genetic and genomic medicine: 844
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Cell type-specific Expression Quantitative Trait Loci

genomics more details view paper
  • Downloaded 402 times
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    • Site-wide: 15,398
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HiC-ACT: Improved Detection of Chromatin Interactions from Hi-C Data via Aggregated Cauchy Test

bioinformatics more details view paper
  • Downloaded 376 times
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    • Site-wide: 131,670
    • In bioinformatics: 10,409
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    • Site-wide: 173,302

Generalized Multi-SNP Mediation Intersection-Union Test

genetics more details view paper
  • Downloaded 343 times
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    • Site-wide: 141,222
    • In genetics: 5,250
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    • Site-wide: 197,702
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Super interactive promoters provide insight into cell type-specific regulatory networks in blood lineage cell types

genetics more details view paper
  • Downloaded 338 times
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    • Site-wide: 142,767
    • In genetics: 5,224
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eSCAN: Scan Regulatory Regions for Aggregate Association Testing using Whole Genome Sequencing Data

genetics more details view paper
  • Downloaded 337 times
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    • Site-wide: 143,141
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Improving polygenic risk prediction in admixed populations by explicitly modeling ancestral-specific effects via GAUDI

genetics more details view paper
  • Downloaded 332 times
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    • Site-wide: 144,573
    • In genetics: None
  • Year to date:
    • Site-wide: 21,018
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    • Site-wide: 758

Genome engineering of Nannochloropsis with large deletions for constructing microalgal minigenomes

biochemistry more details view paper
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    • Site-wide: 131,972

MUNIn (Multiple sample UNifying long-range chromatin Interaction detector): a statistical framework for identifying long-range chromatin interactions from multiple samples

genetics more details view paper
  • Downloaded 301 times
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    • Site-wide: 153,855
    • In genetics: 5,697
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    • Site-wide: 175,756
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    • Site-wide: 127,449

HPRep: Quantifying reproducibility in HiChIP and PLAC-seq datasets

genomics more details view paper
  • Downloaded 274 times
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    • Site-wide: 161,874
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    • Site-wide: 200,788
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Brain injury accelerates the onset of a reversible age-related microglial phenotype associated with hyperphagocytosis and inflammatory neurodegeneration

neuroscience more details view paper
  • Downloaded 260 times
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Leveraging TOPMed Imputation Server and Constructing a Cohort-Specific Imputation Reference Panel to Enhance Genotype Imputation among Cystic Fibrosis Patients

genetics more details view paper
  • Downloaded 238 times
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    • Site-wide: 172,210
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    • Site-wide: 148,179

A brain structural connectivity biomarker for diagnosis of autism spectrum disorder in early childhood

psychiatry and clinical psychology more details view paper
  • Downloaded 208 times
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    • In psychiatry and clinical psychology: 1,161
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SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single cell Hi-C data

bioinformatics more details view paper
  • Downloaded 193 times
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    • Site-wide: 183,282
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