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Author: Jeffrey T. Leek

Rankings

  • All-time downloads: 65,517 (rank: 2,902 )
  • Categories:
    • bioinformatics: 32,282 (rank: 105 )
    • genomics: 18,508 (rank: 801 )
    • neuroscience: 2,463 (rank: 11,417 (tie) )
    • scientific communication and education: 1,059 (rank: 1,074 (tie) )

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Preprints

Flexible analysis of transcriptome assemblies with Ballgown

bioinformatics more details view paper
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    • Site-wide: 668
    • In bioinformatics: 23
  • Year to date:
    • Site-wide: 19,932
  • Since beginning of last month:
    • Site-wide: 36,371

A statistical definition for reproducibility and replicability

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  • Downloaded 11,205 times
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    • Site-wide: 945
  • Year to date:
    • Site-wide: 5,163
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    • Site-wide: 6,565

recount: A large-scale resource of analysis-ready RNA-seq expression data

genomics more details view paper
  • Downloaded 4,525 times
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    • Site-wide: 3,089
    • In genomics: 298
  • Year to date:
    • Site-wide: 22,482
  • Since beginning of last month:
    • Site-wide: 49,350

svaseq: removing batch effects and other unwanted noise from sequencing data

bioinformatics more details view paper
  • Downloaded 3,656 times
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    • Site-wide: 4,148
    • In bioinformatics: 382
  • Year to date:
    • Site-wide: 56,377
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    • Site-wide: 144,630

Polyester: simulating RNA-seq datasets with differential transcript expression

bioinformatics more details view paper
  • Downloaded 2,668 times
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    • Site-wide: 6,528
    • In bioinformatics: 663
  • Year to date:
    • Site-wide: 37,270
  • Since beginning of last month:
    • Site-wide: 29,005

Human splicing diversity across the Sequence Read Archive

genomics more details view paper
  • Downloaded 2,589 times
  • Download rankings, all-time:
    • Site-wide: 6,838
    • In genomics: 696
  • Year to date:
    • Site-wide: 76,971
  • Since beginning of last month:
    • Site-wide: 49,788

Addressing confounding artifacts in reconstruction of gene co-expression networks

genomics more details view paper
  • Downloaded 2,480 times
  • Download rankings, all-time:
    • Site-wide: 7,286
    • In genomics: 749
  • Year to date:
    • Site-wide: 60,051
  • Since beginning of last month:
    • Site-wide: 133,224

Flexible expressed region analysis for RNA-seq with derfinder

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  • Downloaded 2,473 times
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    • Site-wide: 7,314
    • In bioinformatics: 772
  • Year to date:
    • Site-wide: 104,148
  • Since beginning of last month:
    • Site-wide: 125,362

Developmental And Genetic Regulation Of The Human Cortex Transcriptome In Schizophrenia

neuroscience more details view paper
  • Downloaded 2,463 times
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    • Site-wide: 7,358
    • In neuroscience: 674
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    • Site-wide: 86,902
  • Since beginning of last month:
    • Site-wide: 66,355

A direct approach to estimating false discovery rates conditional on covariates

bioinformatics more details view paper
  • Downloaded 2,096 times
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    • Site-wide: 9,302
    • In bioinformatics: 1,028
  • Year to date:
    • Site-wide: 72,460
  • Since beginning of last month:
    • Site-wide: 104,660

RNA-seq transcript quantification from reduced-representation data in recount2

genomics more details view paper
  • Downloaded 2,000 times
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    • Site-wide: 10,026
    • In genomics: 984
  • Year to date:
    • Site-wide: 69,727
  • Since beginning of last month:
    • Site-wide: 89,119

recount3: summaries and queries for large-scale RNA-seq expression and splicing

genomics more details view paper
  • Downloaded 1,849 times
  • Download rankings, all-time:
    • Site-wide: 11,277
    • In genomics: 1,117
  • Year to date:
    • Site-wide: 2,215
  • Since beginning of last month:
    • Site-wide: 1,070

A framework for RNA quality correction in differential expression analysis

bioinformatics more details view paper
  • Downloaded 1,778 times
  • Download rankings, all-time:
    • Site-wide: 11,936
    • In bioinformatics: 1,326
  • Year to date:
    • Site-wide: 127,978
  • Since beginning of last month:
    • Site-wide: 141,129

Improving the value of public RNA-seq expression data by phenotype prediction

bioinformatics more details view paper
  • Downloaded 1,758 times
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    • Site-wide: 12,129
    • In bioinformatics: 1,350
  • Year to date:
    • Site-wide: 106,414
  • Since beginning of last month:
    • Site-wide: 153,905

Strategies for cellular deconvolution in human brain RNA sequencing data

genomics more details view paper
  • Downloaded 1,444 times
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    • Site-wide: 16,431
    • In genomics: 1,581
  • Year to date:
    • Site-wide: 20,832
  • Since beginning of last month:
    • Site-wide: 37,309

recount-brain: a curated repository of human brain RNA-seq datasets metadata

genomics more details view paper
  • Downloaded 1,351 times
  • Download rankings, all-time:
    • Site-wide: 18,161
    • In genomics: 1,729
  • Year to date:
    • Site-wide: 38,670
  • Since beginning of last month:
    • Site-wide: 57,331

Post-prediction Inference

bioinformatics more details view paper
  • Downloaded 1,329 times
  • Download rankings, all-time:
    • Site-wide: 18,632
    • In bioinformatics: 2,107
  • Year to date:
    • Site-wide: 36,702
  • Since beginning of last month:
    • Site-wide: 62,527

Recounting the FANTOM Cage Associated Transcriptome

genomics more details view paper
  • Downloaded 1,283 times
  • Download rankings, all-time:
    • Site-wide: 19,648
    • In genomics: 1,832
  • Year to date:
    • Site-wide: 50,492
  • Since beginning of last month:
    • Site-wide: 131,520

crsra: A package for Cleaning and Analyzing Coursera Research Export Data

scientific communication and education more details view paper
  • Downloaded 1,059 times
  • Download rankings, all-time:
    • Site-wide: 26,315
    • In scientific communication and education: 197
  • Year to date:
    • Site-wide: 109,945
  • Since beginning of last month:
    • Site-wide: 118,716

Avoiding test set bias with rank-based prediction

genomics more details view paper
  • Downloaded 987 times
  • Download rankings, all-time:
    • Site-wide: 29,190
    • In genomics: 2,541
  • Year to date:
    • Site-wide: 161,380
  • Since beginning of last month:
    • Site-wide: 157,775

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL)

bioinformatics more details view paper
  • Downloaded 772 times
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    • Site-wide: 41,772
    • In bioinformatics: 4,386
  • Year to date:
    • Site-wide: 8,145
  • Since beginning of last month:
    • Site-wide: 12,763

Measuring the Contribution of Genomic Predictors to Improving Estimator Precision in Randomized trials

bioinformatics more details view paper
  • Downloaded 594 times
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    • Site-wide: 59,653
    • In bioinformatics: 5,844
  • Year to date:
    • Site-wide: 132,007
  • Since beginning of last month:
    • Site-wide: 108,481

regionReport: Interactive reports for region-based analyses

bioinformatics more details view paper
  • Downloaded 551 times
  • Download rankings, all-time:
    • Site-wide: 65,497
    • In bioinformatics: 6,275
  • Year to date:
    • Site-wide: 164,134
  • Since beginning of last month:
    • Site-wide: 164,576

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