Rxivist logo

Author: David M. Aanensen

  • ORCiD: http://orcid.org/0000-0001-6688-0854
  • Most recently observed institution: Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Old Road Campus, Oxford, United Kingdom and Wellcome Genome Campus, Hinxton, UK

Rankings

  • All-time downloads: 18,919 (rank: 12,543 (tie) )
  • Categories:
    • bioinformatics: 6,102 (rank: 2,296 (tie) )
    • ecology: 1,023 (rank: 4,832 (tie) )
    • epidemiology: 2,734 (rank: 5,551 )
    • evolutionary biology: 526 (rank: 15,865 (tie) )
    • genomics: 5,068 (rank: 5,410 )
    • infectious diseases: 34 (rank: 58,281 (tie) )
    • microbiology: 3,163 (rank: 5,775 (tie) )
    • public and global health: 269 (rank: 11,931 (tie) )

Downloads per author, site-wide

Preprints

High-resolution sweep metagenomics using fast probabilistic inference

bioinformatics more details view paper
  • Downloaded 2,841 times
  • Download rankings, all-time:
    • Site-wide: 5,912
    • In bioinformatics: 585
  • Year to date:
    • Site-wide: 81,921
  • Since beginning of last month:
    • Site-wide: 39,745

Establishment & lineage dynamics of the SARS-CoV-2 epidemic in the UK

epidemiology more details view paper
  • Downloaded 1,875 times
  • Download rankings, all-time:
    • Site-wide: 10,962
    • In epidemiology: 841
  • Year to date:
    • Site-wide: 9,581
  • Since beginning of last month:
    • Site-wide: 47,808

MAJORA: Continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance

bioinformatics more details view paper
  • Downloaded 1,263 times
  • Download rankings, all-time:
    • Site-wide: 19,976
    • In bioinformatics: 2,258
  • Year to date:
    • Site-wide: 8,352
  • Since beginning of last month:
    • Site-wide: 52,489

Signatures of negative frequency dependent selection in colonisation factors and the evolution of a multi-drug resistant lineage of Escherichia coli

microbiology more details view paper
  • Downloaded 1,259 times
  • Download rankings, all-time:
    • Site-wide: 20,053
    • In microbiology: 1,168
  • Year to date:
    • Site-wide: 133,618
  • Since beginning of last month:
    • Site-wide: 122,797

PANINI: Pangenome Neighbor Identification for Bacterial Populations

microbiology more details view paper
  • Downloaded 1,202 times
  • Download rankings, all-time:
    • Site-wide: 21,530
    • In microbiology: 1,255
  • Year to date:
    • Site-wide: 107,578
  • Since beginning of last month:
    • Site-wide: 37,901

Phandango: an interactive viewer for bacterial population genomics.

bioinformatics more details view paper
  • Downloaded 1,102 times
  • Download rankings, all-time:
    • Site-wide: 24,563
    • In bioinformatics: 2,762
  • Year to date:
    • Site-wide: 104,024
  • Since beginning of last month:
    • Site-wide: 138,580

Development and worldwide use of a non-lethal and minimal population-level impact protocols for the isolation of chytrids from amphibians

ecology more details view paper
  • Downloaded 1,023 times
  • Download rankings, all-time:
    • Site-wide: 27,473
    • In ecology: 500
  • Year to date:
    • Site-wide: 109,678
  • Since beginning of last month:
    • Site-wide: 107,915

See and Sequence: Integrating Whole-Genome Sequencing Within the National Antimicrobial Resistance Surveillance Program in the Philippines

genomics more details view paper
  • Downloaded 907 times
  • Download rankings, all-time:
    • Site-wide: 32,860
    • In genomics: 2,775
  • Year to date:
    • Site-wide: 39,899
  • Since beginning of last month:
    • Site-wide: 40,153

Contrasting approaches to genome-wide association studies impact the detection of resistance mechanisms in Staphylococcus aureus

bioinformatics more details view paper
  • Downloaded 896 times
  • Download rankings, all-time:
    • Site-wide: 33,410
    • In bioinformatics: 3,636
  • Year to date:
    • Site-wide: 37,952
  • Since beginning of last month:
    • Site-wide: 40,140

Rapid genome sequencing for outbreak analysis of the emerging human fungal pathogen Candida auris

epidemiology more details view paper
  • Downloaded 859 times
  • Download rankings, all-time:
    • Site-wide: 35,493
    • In epidemiology: 1,867
  • Year to date:
    • Site-wide: 112,378
  • Since beginning of last month:
    • Site-wide: 126,020

Whole genome sequencing identifies independent outbreaks of Shigellosis in 2010 and 2011 in La Pampa Province, Argentina

genomics more details view paper
  • Downloaded 725 times
  • Download rankings, all-time:
    • Site-wide: 45,276
    • In genomics: 3,521
  • Year to date:
    • Site-wide: 153,177
  • Since beginning of last month:
    • Site-wide: 151,937

Genomic analysis of carbapenemase-encoding plasmids from Klebsiella pneumoniae across Europe highlights three major patterns of dissemination

microbiology more details view paper
  • Downloaded 702 times
  • Download rankings, all-time:
    • Site-wide: 47,326
    • In microbiology: 2,854
  • Year to date:
    • Site-wide: 83,125
  • Since beginning of last month:
    • Site-wide: 57,960

A community-driven resource for genomic epidemiology and antimicrobial resistance prediction of Neisseria gonorrhoeae at Pathogenwatch

genomics more details view paper
  • Downloaded 643 times
  • Download rankings, all-time:
    • Site-wide: 53,408
    • In genomics: 4,008
  • Year to date:
    • Site-wide: 36,597
  • Since beginning of last month:
    • Site-wide: 61,488

Frequent recombination of pneumococcal capsule highlights future risks of emergence of novel serotypes.

evolutionary biology more details view paper
  • Downloaded 526 times
  • Download rankings, all-time:
    • Site-wide: 68,583
    • In evolutionary biology: 3,428
  • Year to date:
    • Site-wide: 122,092
  • Since beginning of last month:
    • Site-wide: 108,189

A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at Pathogenwatch

genomics more details view paper
  • Downloaded 513 times
  • Download rankings, all-time:
    • Site-wide: 70,647
    • In genomics: 4,873
  • Year to date:
    • Site-wide: 49,154
  • Since beginning of last month:
    • Site-wide: 134,524

Genomic Surveillance of Methicillin-Resistant Staphylococcus aureus in the Philippines from 2013-2014

genomics more details view paper
  • Downloaded 397 times
  • Download rankings, all-time:
    • Site-wide: 92,600
    • In genomics: 5,793
  • Year to date:
    • Site-wide: 49,585
  • Since beginning of last month:
    • Site-wide: 84,078

Genomic Surveillance of Pseudomonas aeruginosa in the Philippines from 2013-2014

genomics more details view paper
  • Downloaded 392 times
  • Download rankings, all-time:
    • Site-wide: 93,724
    • In genomics: 5,838
  • Year to date:
    • Site-wide: 66,871
  • Since beginning of last month:
    • Site-wide: 101,244

Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch

genomics more details view paper
  • Downloaded 377 times
  • Download rankings, all-time:
    • Site-wide: 97,116
    • In genomics: 5,957
  • Year to date:
    • Site-wide: 24,249
  • Since beginning of last month:
    • Site-wide: 16,058

Genomic Surveillance of Neisseria gonorrhoeae in the Philippines 2013-2014

genomics more details view paper
  • Downloaded 324 times
  • Download rankings, all-time:
    • Site-wide: 109,814
    • In genomics: 6,402
  • Year to date:
    • Site-wide: 92,505
  • Since beginning of last month:
    • Site-wide: 84,076

Complexity of genomic epidemiology of carbapenem-resistant Klebsiella pneumoniae isolates in Colombia urges the reinforcement of whole genome sequencing based surveillance programs

genomics more details view paper
  • Downloaded 297 times
  • Download rankings, all-time:
    • Site-wide: 116,772
    • In genomics: 6,613
  • Year to date:
    • Site-wide: 34,261
  • Since beginning of last month:
    • Site-wide: 19,175

Protocol for an interdisciplinary cross-sectional study investigating the social, biological and community-level drivers of antimicrobial resistance (AMR): Holistic Approach to Unravelling Antibiotic Resistance in East Africa (HATUA)

public and global health more details view paper
  • Downloaded 269 times
  • Download rankings, all-time:
    • Site-wide: 124,340
    • In public and global health: 1,668
  • Year to date:
    • Site-wide: 54,754
  • Since beginning of last month:
    • Site-wide: 121,073

Clones and Clusters of Antimicrobial-Resistant Klebsiella from Southwestern Nigeria

genomics more details view paper
  • Downloaded 235 times
  • Download rankings, all-time:
    • Site-wide: 133,084
    • In genomics: 7,151
  • Year to date:
    • Site-wide: 46,911
  • Since beginning of last month:
    • Site-wide: 27,569

Genome Sequencing Identifies Previously Unrecognized Klebsiella pneumoniae Outbreaks in Neonatal Intensive Care Units in the Philippines

genomics more details view paper
  • Downloaded 163 times
  • Download rankings, all-time:
    • Site-wide: 150,026
    • In genomics: 7,627
  • Year to date:
    • Site-wide: 72,648
  • Since beginning of last month:
    • Site-wide: 66,004

Circulation of third-generation cephalosporin resistant Salmonella Typhi in Mumbai, India

genomics more details view paper
  • Downloaded 95 times
  • Download rankings, all-time:
    • Site-wide: 160,290
    • In genomics: 7,894
  • Year to date:
    • Site-wide: 117,702
  • Since beginning of last month:
    • Site-wide: 132,808

An ST131 clade and a Phylogroup A clade bearing a novel Escherichia coli O-antigen cluster predominate among bloodstream E. coli isolates from southwest Nigeria hospitals

infectious diseases more details view paper
  • Downloaded 34 times
  • Download rankings, all-time:
    • Site-wide: 164,193
    • In infectious diseases: 6,562
  • Year to date:
    • Site-wide: 162,553
  • Since beginning of last month:
    • Site-wide: 96,550

PanLingua

News