Rxivist logo

Author: Nicholas J Croucher

  • ORCiD: http://orcid.org/0000-0001-6303-8768
  • Most recently observed institution: MRC Centre for Global Infectious Disease Analysis, Sir Michael Uren Hub, White City Campus, Imperial College London, London, W12 0BZ, UK

Rankings

  • All-time downloads: 17,137 (rank: 16,602 (tie) )
  • Categories:
    • bioinformatics: 3,197 (rank: 5,510 )
    • evolutionary biology: 3,907 (rank: 1,212 )
    • genetics: 759 (rank: 23,260 (tie) )
    • genomics: 6,722 (rank: 3,855 )
    • microbiology: 1,688 (rank: 11,979 (tie) )

Downloads per author, site-wide

Preprints

Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes

genomics more details view paper
  • Downloaded 2,229 times
  • Download rankings, all-time:
    • Site-wide: 9,761
    • In genomics: 897
  • Year to date:
    • Site-wide: 140,443
  • Since beginning of last month:
    • Site-wide: 178,371

Efficient inference of recent and ancestral recombination within bacterial populations

bioinformatics more details view paper
  • Downloaded 1,983 times
  • Download rankings, all-time:
    • Site-wide: 11,652
    • In bioinformatics: 1,211
  • Year to date:
    • Site-wide: 116,935
  • Since beginning of last month:
    • Site-wide: 159,508

Fast and flexible bacterial genomic epidemiology with PopPUNK

genomics more details view paper
  • Downloaded 1,689 times
  • Download rankings, all-time:
    • Site-wide: 14,746
    • In genomics: 1,340
  • Year to date:
    • Site-wide: 112,249
  • Since beginning of last month:
    • Site-wide: 130,843

Predicting evolution using frequency-dependent selection in bacterial populations

evolutionary biology more details view paper
  • Downloaded 1,388 times
  • Download rankings, all-time:
    • Site-wide: 19,893
    • In evolutionary biology: 646
  • Year to date:
    • Site-wide: 70,752
  • Since beginning of last month:
    • Site-wide: 51,117

Signatures of negative frequency dependent selection in colonisation factors and the evolution of a multi-drug resistant lineage of Escherichia coli

microbiology more details view paper
  • Downloaded 1,280 times
  • Download rankings, all-time:
    • Site-wide: 22,548
    • In microbiology: 1,260
  • Year to date:
    • Site-wide: 147,877
  • Since beginning of last month:
    • Site-wide: 131,430

Easy and Accurate Reconstruction of Whole HIV Genomes from Short-Read Sequence Data

bioinformatics more details view paper
  • Downloaded 1,231 times
  • Download rankings, all-time:
    • Site-wide: 23,988
    • In bioinformatics: 2,527
  • Year to date:
    • Site-wide: 155,222
  • Since beginning of last month:
    • Site-wide: 127,139

Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis

genetics more details view paper
  • Downloaded 766 times
  • Download rankings, all-time:
    • Site-wide: 48,381
    • In genetics: 1,937
  • Year to date:
    • Site-wide: 161,313
  • Since beginning of last month:
    • Site-wide: 113,491

SuperDCA for genome-wide epistasis analysis

genomics more details view paper
  • Downloaded 730 times
  • Download rankings, all-time:
    • Site-wide: 51,794
    • In genomics: 3,717
  • Year to date:
    • Site-wide: 153,155
  • Since beginning of last month:
    • Site-wide: 160,291

Genome-wide identification of lineage and locus specific variation associated with pneumococcal carriage duration

genomics more details view paper
  • Downloaded 667 times
  • Download rankings, all-time:
    • Site-wide: 58,717
    • In genomics: 4,105
  • Year to date:
    • Site-wide: 130,177
  • Since beginning of last month:
    • Site-wide: 146,192

The role of interspecies recombinations in the evolution of antibiotic resistant pneumococci

genomics more details view paper
  • Downloaded 615 times
  • Download rankings, all-time:
    • Site-wide: 65,282
    • In genomics: 4,511
  • Year to date:
    • Site-wide: 86,646
  • Since beginning of last month:
    • Site-wide: 70,943

Designing ecologically-optimised vaccines using population genomics

evolutionary biology more details view paper
  • Downloaded 557 times
  • Download rankings, all-time:
    • Site-wide: 73,873
    • In evolutionary biology: 3,484
  • Year to date:
    • Site-wide: 116,938
  • Since beginning of last month:
    • Site-wide: 127,059

Frequent recombination of pneumococcal capsule highlights future risks of emergence of novel serotypes.

evolutionary biology more details view paper
  • Downloaded 540 times
  • Download rankings, all-time:
    • Site-wide: 76,667
    • In evolutionary biology: 3,556
  • Year to date:
    • Site-wide: 152,805
  • Since beginning of last month:
    • Site-wide: 130,459

Large scale genomic analysis shows no evidence for repeated pathogen adaptation during the invasive phase of bacterial meningitis in humans

genomics more details view paper
  • Downloaded 490 times
  • Download rankings, all-time:
    • Site-wide: 85,787
    • In genomics: 5,383
  • Year to date:
    • Site-wide: 118,265
  • Since beginning of last month:
    • Site-wide: 128,207

Population genomics of pneumococcal carriage in Massachusetts children following PCV-13 introduction

evolutionary biology more details view paper
  • Downloaded 489 times
  • Download rankings, all-time:
    • Site-wide: 86,008
    • In evolutionary biology: 3,991
  • Year to date:
    • Site-wide: 133,975
  • Since beginning of last month:
    • Site-wide: 165,935

Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in Streptococcus pneumoniae

evolutionary biology more details view paper
  • Downloaded 484 times
  • Download rankings, all-time:
    • Site-wide: 86,963
    • In evolutionary biology: 4,034
  • Year to date:
    • Site-wide: 177,873
  • Since beginning of last month:
    • Site-wide: 180,545

Pneumococcal within-host diversity during colonisation, transmission and treatment

genomics more details view paper
  • Downloaded 400 times
  • Download rankings, all-time:
    • Site-wide: 105,818
    • In genomics: None
  • Year to date:
    • Site-wide: 5,043
  • Since beginning of last month:
    • Site-wide: 8,011

Genome-wide association, prediction and heritability in bacteria

genomics more details view paper
  • Downloaded 389 times
  • Download rankings, all-time:
    • Site-wide: 108,271
    • In genomics: 6,394
  • Year to date:
    • Site-wide: 38,288
  • Since beginning of last month:
    • Site-wide: 59,459

Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structures

evolutionary biology more details view paper
  • Downloaded 351 times
  • Download rankings, all-time:
    • Site-wide: 118,319
    • In evolutionary biology: 5,506
  • Year to date:
    • Site-wide: 164,601
  • Since beginning of last month:
    • Site-wide: 156,496

Diverse Genetic Determinants of Nitrofurantoin Resistance in UK Escherichia coli

microbiology more details view paper
  • Downloaded 245 times
  • Download rankings, all-time:
    • Site-wide: 148,862
    • In microbiology: 10,701
  • Year to date:
    • Site-wide: 66,280
  • Since beginning of last month:
    • Site-wide: 108,422

Moonlighting proteins activate transformation in epigenetically-differentiated phase variants of multidrug-resistant Streptococcus pneumoniae

microbiology more details view paper
  • Downloaded 216 times
  • Download rankings, all-time:
    • Site-wide: 157,075
    • In microbiology: None
  • Year to date:
    • Site-wide: 12,257
  • Since beginning of last month:
    • Site-wide: 7,967

Analysing pneumococcal invasiveness using Bayesian models of pathogen progression rates

microbiology more details view paper
  • Downloaded 206 times
  • Download rankings, all-time:
    • Site-wide: 159,729
    • In microbiology: 11,552
  • Year to date:
    • Site-wide: 44,896
  • Since beginning of last month:
    • Site-wide: 121,008

Epidemiological dynamics of bacteriocin competition and antibiotic resistance

evolutionary biology more details view paper
  • Downloaded 192 times
  • Download rankings, all-time:
    • Site-wide: 163,408
    • In evolutionary biology: 7,467
  • Year to date:
    • Site-wide: 96,522
  • Since beginning of last month:
    • Site-wide: 61,077

PanLingua

News