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Author: Yonatan Grad

Rankings

  • All-time downloads: 161,642 (rank: 506 )
  • Categories:
    • bioinformatics: 5,851 (rank: 2,086 )
    • epidemiology: 112,976 (rank: 128 )
    • evolutionary biology: 2,034 (rank: 2,747 (tie) )
    • genomics: 7,966 (rank: 2,837 )
    • immunology: 553 (rank: 17,626 (tie) )
    • infectious diseases: 26,124 (rank: 2,062 )
    • microbiology: 5,504 (rank: 2,592 (tie) )
    • pharmacology and therapeutics: 634 (rank: 332 (tie) )

Downloads per author, site-wide

Preprints

Social distancing strategies for curbing the COVID-19 epidemic

epidemiology more details view paper
  • Downloaded 62,847 times
  • Download rankings, all-time:
    • Site-wide: 92
    • In epidemiology: 20
  • Year to date:
    • Site-wide: 1,333
  • Since beginning of last month:
    • Site-wide: 1,852

Projecting the transmission dynamics of SARS-CoV-2 through the post-pandemic period

epidemiology more details view paper
  • Downloaded 39,316 times
  • Download rankings, all-time:
    • Site-wide: 162
    • In epidemiology: 38
  • Year to date:
    • Site-wide: 5,096
  • Since beginning of last month:
    • Site-wide: 7,773

Model-informed COVID-19 vaccine prioritization strategies by age and serostatus

infectious diseases more details view paper
  • Downloaded 10,811 times
  • Download rankings, all-time:
    • Site-wide: 800
    • In infectious diseases: 247
  • Year to date:
    • Site-wide: 334
  • Since beginning of last month:
    • Site-wide: 1,471

Modeling the Comparative Impact of Individual Quarantine vs. Active Monitoring of Contacts for the Mitigation of COVID-19

infectious diseases more details view paper
  • Downloaded 7,705 times
  • Download rankings, all-time:
    • Site-wide: 1,234
    • In infectious diseases: 353
  • Year to date:
    • Site-wide: 9,292
  • Since beginning of last month:
    • Site-wide: 15,245

Antimicrobial exposure in sexual networks drives divergent evolution in modern gonococci

genomics more details view paper
  • Downloaded 6,256 times
  • Download rankings, all-time:
    • Site-wide: 1,609
    • In genomics: 137
  • Year to date:
    • Site-wide: 75,039
  • Since beginning of last month:
    • Site-wide: 88,652

Rapid heuristic inference of antibiotic resistance and susceptibility by genomic neighbor typing

bioinformatics more details view paper
  • Downloaded 5,501 times
  • Download rankings, all-time:
    • Site-wide: 1,932
    • In bioinformatics: 148
  • Year to date:
    • Site-wide: 59,258
  • Since beginning of last month:
    • Site-wide: 73,326

Estimating SARS-CoV-2 seroprevalence and epidemiological parameters with uncertainty from serological surveys

infectious diseases more details view paper
  • Downloaded 4,012 times
  • Download rankings, all-time:
    • Site-wide: 3,002
    • In infectious diseases: 622
  • Year to date:
    • Site-wide: 13,387
  • Since beginning of last month:
    • Site-wide: 35,839

Densely sampled viral trajectories suggest longer duration of acute infection with B.1.1.7 variant relative to non-B.1.1.7 SARS-CoV-2

epidemiology more details view paper
  • Downloaded 2,615 times
  • Download rankings, all-time:
    • Site-wide: 5,524
    • In epidemiology: 479
  • Year to date:
    • Site-wide: 632
  • Since beginning of last month:
    • Site-wide: 1,189

Building an International Consortium for Tracking Coronavirus Health Status

infectious diseases more details view paper
  • Downloaded 1,264 times
  • Download rankings, all-time:
    • Site-wide: 16,266
    • In infectious diseases: 1,652
  • Year to date:
    • Site-wide: 82,058
  • Since beginning of last month:
    • Site-wide: 92,613

Potential biases arising from epidemic dynamics in observational seroprotection studies

infectious diseases more details view paper
  • Downloaded 1,241 times
  • Download rankings, all-time:
    • Site-wide: 16,689
    • In infectious diseases: 1,673
  • Year to date:
    • Site-wide: 50,234
  • Since beginning of last month:
    • Site-wide: 56,174

Identification of hidden population structure in time-scaled phylogenies

evolutionary biology more details view paper
  • Downloaded 1,240 times
  • Download rankings, all-time:
    • Site-wide: 16,715
    • In evolutionary biology: 612
  • Year to date:
    • Site-wide: 51,435
  • Since beginning of last month:
    • Site-wide: 103,318

Vaccine waning and mumps re-emergence in the United States

epidemiology more details view paper
  • Downloaded 1,202 times
  • Download rankings, all-time:
    • Site-wide: 17,508
    • In epidemiology: 1,100
  • Year to date:
    • Site-wide: 101,954
  • Since beginning of last month:
    • Site-wide: 68,063

Containing Emerging Epidemics: a Quantitative Comparison of Quarantine and Symptom Monitoring

epidemiology more details view paper
  • Downloaded 1,157 times
  • Download rankings, all-time:
    • Site-wide: 18,526
    • In epidemiology: 1,152
  • Year to date:
    • Site-wide: 99,317
  • Since beginning of last month:
    • Site-wide: 68,002

Estimating the proportion of bystander selection for antibiotic resistance among potentially pathogenic bacterial flora

epidemiology more details view paper
  • Downloaded 1,080 times
  • Download rankings, all-time:
    • Site-wide: 20,517
    • In epidemiology: 1,232
  • Year to date:
    • Site-wide: 100,746
  • Since beginning of last month:
    • Site-wide: 104,212

Increased antibiotic susceptibility in Neisseria gonorrhoeae through adaptation to the cervical environment

microbiology more details view paper
  • Downloaded 945 times
  • Download rankings, all-time:
    • Site-wide: 24,986
    • In microbiology: 1,453
  • Year to date:
    • Site-wide: 41,863
  • Since beginning of last month:
    • Site-wide: 33,687

Co-circulating mumps lineages at multiple geographic scales

genomics more details view paper
  • Downloaded 809 times
  • Download rankings, all-time:
    • Site-wide: 31,026
    • In genomics: 2,755
  • Year to date:
    • Site-wide: 99,704
  • Since beginning of last month:
    • Site-wide: 75,915

Fine-scale haplotype structure reveals strong signatures of positive selection in a recombining bacterial pathogen

evolutionary biology more details view paper
  • Downloaded 794 times
  • Download rankings, all-time:
    • Site-wide: 31,852
    • In evolutionary biology: 1,481
  • Year to date:
    • Site-wide: 118,058
  • Since beginning of last month:
    • Site-wide: 115,470

The role of "spillover" in antibiotic resistance

epidemiology more details view paper
  • Downloaded 784 times
  • Download rankings, all-time:
    • Site-wide: 32,392
    • In epidemiology: 1,663
  • Year to date:
    • Site-wide: 19,847
  • Since beginning of last month:
    • Site-wide: 51,154

Increasing Antibiotic Susceptibility In Staphylococcus aureus In Boston, Massachusetts, 2000-2014: An Observational Study

epidemiology more details view paper
  • Downloaded 779 times
  • Download rankings, all-time:
    • Site-wide: 32,709
    • In epidemiology: 1,672
  • Year to date:
    • Site-wide: 116,173
  • Since beginning of last month:
    • Site-wide: 108,491

Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data

microbiology more details view paper
  • Downloaded 664 times
  • Download rankings, all-time:
    • Site-wide: 40,571
    • In microbiology: 2,448
  • Year to date:
    • Site-wide: 99,168
  • Since beginning of last month:
    • Site-wide: 91,231

RNA polymerase mutations cause cephalosporin resistance in clinical Neisseria gonorrhoeae isolates

microbiology more details view paper
  • Downloaded 635 times
  • Download rankings, all-time:
    • Site-wide: 43,017
    • In microbiology: 2,639
  • Year to date:
    • Site-wide: 83,363
  • Since beginning of last month:
    • Site-wide: 90,530

Optimal design for phase 2 studies of SARS-CoV-2 antiviral drugs

pharmacology and therapeutics more details view paper
  • Downloaded 634 times
  • Download rankings, all-time:
    • Site-wide: 43,122
    • In pharmacology and therapeutics: 43
  • Year to date:
    • Site-wide: 4,281
  • Since beginning of last month:
    • Site-wide: 4,975

Comparative Tn-Seq reveals common daptomycin resistance determinants in Staphylococcus aureus despite strain-dependent differences in essentiality of shared cell envelope genes

microbiology more details view paper
  • Downloaded 611 times
  • Download rankings, all-time:
    • Site-wide: 45,140
    • In microbiology: 2,780
  • Year to date:
    • Site-wide: 74,546
  • Since beginning of last month:
    • Site-wide: 80,533

Impact of rapid susceptibility testing and antibiotic selection strategy on the emergence and spread of antibiotic resistance in gonorrhea

epidemiology more details view paper
  • Downloaded 587 times
  • Download rankings, all-time:
    • Site-wide: 47,453
    • In epidemiology: 2,211
  • Year to date:
    • Site-wide: 129,284
  • Since beginning of last month:
    • Site-wide: 124,446

Jointly modeling prevalence, sensitivity and specificity for optimal sample allocation

immunology more details view paper
  • Downloaded 553 times
  • Download rankings, all-time:
    • Site-wide: 51,089
    • In immunology: 1,488
  • Year to date:
    • Site-wide: 30,021
  • Since beginning of last month:
    • Site-wide: 31,508

A community-driven resource for genomic epidemiology and antimicrobial resistance prediction of Neisseria gonorrhoeae at Pathogenwatch

genomics more details view paper
  • Downloaded 532 times
  • Download rankings, all-time:
    • Site-wide: 53,435
    • In genomics: 4,092
  • Year to date:
    • Site-wide: 26,303
  • Since beginning of last month:
    • Site-wide: 32,583

Azithromycin resistance through interspecific acquisition of an epistasis dependent efflux pump component and transcriptional regulator in Neisseria gonorrhoeae

microbiology more details view paper
  • Downloaded 496 times
  • Download rankings, all-time:
    • Site-wide: 57,983
    • In microbiology: 3,737
  • Year to date:
    • Site-wide: 125,807
  • Since beginning of last month:
    • Site-wide: 134,010

Despite egg-adaptive mutations, the 2012-13 H3N2 influenza vaccine induced comparable antibody titers to the intended strain

epidemiology more details view paper
  • Downloaded 494 times
  • Download rankings, all-time:
    • Site-wide: 58,280
    • In epidemiology: 2,558
  • Year to date:
    • Site-wide: 138,564
  • Since beginning of last month:
    • Site-wide: 125,750

Increased power from bacterial genome-wide association conditional on known effects identifies Neisseria gonorrhoeae macrolide resistance mutations in the 50S ribosomal protein L4

microbiology more details view paper
  • Downloaded 487 times
  • Download rankings, all-time:
    • Site-wide: 59,269
    • In microbiology: 3,836
  • Year to date:
    • Site-wide: 73,205
  • Since beginning of last month:
    • Site-wide: 84,657

The distribution of antibiotic use and its association with antibiotic resistance

epidemiology more details view paper
  • Downloaded 478 times
  • Download rankings, all-time:
    • Site-wide: 60,400
    • In epidemiology: 2,650
  • Year to date:
    • Site-wide: 125,902
  • Since beginning of last month:
    • Site-wide: 102,666

Trends in outpatient antibiotic prescribing practice among US older adults, 2011-2015: an observational study

epidemiology more details view paper
  • Downloaded 466 times
  • Download rankings, all-time:
    • Site-wide: 62,009
    • In epidemiology: 2,713
  • Year to date:
    • Site-wide: 111,659
  • Since beginning of last month:
    • Site-wide: 124,910

Photo-inactivation of Neisseria gonorrhoeae: A paradigm changing approach for combating antibiotic-resistant gonococcal infection

microbiology more details view paper
  • Downloaded 433 times
  • Download rankings, all-time:
    • Site-wide: 67,125
    • In microbiology: 4,470
  • Year to date:
    • Site-wide: 87,153
  • Since beginning of last month:
    • Site-wide: 106,514

Dissecting the mechanisms of a 5-year decline in antibiotic prescribing

epidemiology more details view paper
  • Downloaded 420 times
  • Download rankings, all-time:
    • Site-wide: 69,110
    • In epidemiology: 2,978
  • Year to date:
    • Site-wide: 89,787
  • Since beginning of last month:
    • Site-wide: 77,601

Modeling the impact of racial and ethnic disparities on COVID-19 epidemic dynamics

epidemiology more details view paper
  • Downloaded 409 times
  • Download rankings, all-time:
    • Site-wide: 71,010
    • In epidemiology: 3,047
  • Year to date:
    • Site-wide: 8,137
  • Since beginning of last month:
    • Site-wide: 6,873

Targeted surveillance strategies for efficient detection of novel antibiotic resistance variants

genomics more details view paper
  • Downloaded 369 times
  • Download rankings, all-time:
    • Site-wide: 78,075
    • In genomics: 5,212
  • Year to date:
    • Site-wide: 139,415
  • Since beginning of last month:
    • Site-wide: 119,449

A Bayesian model of acquisition and clearance of bacterial colonization incorporating within-host variation

bioinformatics more details view paper
  • Downloaded 350 times
  • Download rankings, all-time:
    • Site-wide: 81,744
    • In bioinformatics: 7,418
  • Year to date:
    • Site-wide: 139,528
  • Since beginning of last month:
    • Site-wide: 133,171

Impact of population structure in the design of RNA-based diagnostics for antibiotic resistance in Neisseria gonorrhoeae

microbiology more details view paper
  • Downloaded 327 times
  • Download rankings, all-time:
    • Site-wide: 86,420
    • In microbiology: 6,038
  • Year to date:
    • Site-wide: 125,091
  • Since beginning of last month:
    • Site-wide: 127,976

Quantifying the surveillance required to sustain genetic marker-based antibiotic resistance diagnostics

microbiology more details view paper
  • Downloaded 317 times
  • Download rankings, all-time:
    • Site-wide: 88,498
    • In microbiology: 6,220
  • Year to date:
    • Site-wide: 136,286
  • Since beginning of last month:
    • Site-wide: 125,278

Potential impact of outpatient stewardship interventions on antibiotic exposures of bacterial pathogens

infectious diseases more details view paper
  • Downloaded 306 times
  • Download rankings, all-time:
    • Site-wide: 90,736
    • In infectious diseases: 3,854
  • Year to date:
    • Site-wide: 90,092
  • Since beginning of last month:
    • Site-wide: 111,378

High-frequency phase-switching of modB methylase is associated with phenotypic ceftriaxone susceptibility in Neisseria gonorrhoeae

microbiology more details view paper
  • Downloaded 288 times
  • Download rankings, all-time:
    • Site-wide: 94,743
    • In microbiology: 6,771
  • Year to date:
    • Site-wide: 83,772
  • Since beginning of last month:
    • Site-wide: 70,119

Genomic assessment of within-host population variation in Neisseria gonorrhoeae: Implications for gonorrhoea transmission

infectious diseases more details view paper
  • Downloaded 277 times
  • Download rankings, all-time:
    • Site-wide: 97,363
    • In infectious diseases: 4,035
  • Year to date:
    • Site-wide: 37,906
  • Since beginning of last month:
    • Site-wide: 25,744

The distribution and spread of susceptible and resistant Neisseria gonorrhoeae across demographic groups in a major metropolitan center

infectious diseases more details view paper
  • Downloaded 251 times
  • Download rankings, all-time:
    • Site-wide: 103,268
    • In infectious diseases: 4,183
  • Year to date:
    • Site-wide: 80,701
  • Since beginning of last month:
    • Site-wide: 71,514

The roles of stewardship and socioeconomic status in geographic variation in antibiotic prescribing: an observational study

epidemiology more details view paper
  • Downloaded 178 times
  • Download rankings, all-time:
    • Site-wide: 120,587
    • In epidemiology: 5,008
  • Year to date:
    • Site-wide: 85,918
  • Since beginning of last month:
    • Site-wide: 71,275

Reduction in antibiotic prescribing attainable with a gonococcal vaccine

epidemiology more details view paper
  • Downloaded 164 times
  • Download rankings, all-time:
    • Site-wide: 123,591
    • In epidemiology: 5,128
  • Year to date:
    • Site-wide: 77,016
  • Since beginning of last month:
    • Site-wide: 78,584

Efflux pump antibiotic binding site mutations are associated with azithromycin nonsusceptibility in clinical Neisseria gonorrhoeae isolates

microbiology more details view paper
  • Downloaded 155 times
  • Download rankings, all-time:
    • Site-wide: 125,784
    • In microbiology: 9,490
  • Year to date:
    • Site-wide: 130,325
  • Since beginning of last month:
    • Site-wide: 99,713

Emergence and evolution of antimicrobial resistance genes and mutations in Neisseria gonorrhoeae

microbiology more details view paper
  • Downloaded 146 times
  • Download rankings, all-time:
    • Site-wide: 127,665
    • In microbiology: 9,661
  • Year to date:
    • Site-wide: 73,119
  • Since beginning of last month:
    • Site-wide: 117,318

Modeling MRSA decolonization: Interactions between body sites and the impact of site-specific clearance

infectious diseases more details view paper
  • Downloaded 136 times
  • Download rankings, all-time:
    • Site-wide: 129,661
    • In infectious diseases: 4,914
  • Year to date:
    • Site-wide: 45,282
  • Since beginning of last month:
    • Site-wide: 44,526

Large variation in the association between seasonal antibiotic use and resistance across multiple bacterial species and antibiotic classes

infectious diseases more details view paper
  • Downloaded 121 times
  • Download rankings, all-time:
    • Site-wide: 132,754
    • In infectious diseases: 5,007
  • Year to date:
    • Site-wide: 71,178
  • Since beginning of last month:
    • Site-wide: 79,221

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