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Author: S. Cenk Sahinalp

Rankings

  • All-time downloads: 23,615 (rank: 2,237 out of 393,333)
  • Categories:
    • bioinformatics: 6,209 (rank: 1,315 out of 33,499)
    • cancer biology: 16,964 (rank: 52 out of 27,296)
    • systems biology: 442 (rank: 6,741 (tie) out of 11,532)

Downloads per author, site-wide

Preprints

The evolutionary history of 2,658 cancers

cancer biology more details view paper
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    • Site-wide: 284 out of 92,068
    • In cancer biology: 6 out of 3,259
  • Year to date:
    • Site-wide: 1,589 out of 92,068
  • Since beginning of last month:
    • Site-wide: 8,282 out of 92,068

Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

cancer biology more details view paper
  • Downloaded 4,974 times
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    • Site-wide: 788 out of 92,068
    • In cancer biology: 23 out of 3,259
  • Year to date:
    • Site-wide: 1,744 out of 92,068
  • Since beginning of last month:
    • Site-wide: 2,419 out of 92,068

Pathway and network analysis of more than 2,500 whole cancer genomes

cancer biology more details view paper
  • Downloaded 1,484 times
  • Download rankings, all-time:
    • Site-wide: 6,190 out of 92,068
    • In cancer biology: 159 out of 3,259
  • Year to date:
    • Site-wide: 18,840 out of 92,068
  • Since beginning of last month:
    • Site-wide: 23,594 out of 92,068

BAP1 Haploinsufficiency Predicts a Distinct Immunogenic Class of Malignant Peritoneal Mesothelioma

cancer biology more details view paper
  • Downloaded 1,245 times
  • Download rankings, all-time:
    • Site-wide: 8,292 out of 92,068
    • In cancer biology: 226 out of 3,259
  • Year to date:
    • Site-wide: 25,415 out of 92,068
  • Since beginning of last month:
    • Site-wide: 33,228 out of 92,068

Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data

bioinformatics more details view paper
  • Downloaded 1,209 times
  • Download rankings, all-time:
    • Site-wide: 8,710 out of 92,068
    • In bioinformatics: 1,454 out of 8,636
  • Year to date:
    • Site-wide: 63,607 out of 92,068
  • Since beginning of last month:
    • Site-wide: 41,387 out of 92,068

Sketching Algorithms for Genomic Data Analysis and Querying in a Secure Enclave

bioinformatics more details view paper
  • Downloaded 815 times
  • Download rankings, all-time:
    • Site-wide: 16,361 out of 92,068
    • In bioinformatics: 2,509 out of 8,636
  • Year to date:
    • Site-wide: 14,204 out of 92,068
  • Since beginning of last month:
    • Site-wide: 7,544 out of 92,068

PhISCS - A Combinatorial Approach for Sub-perfect Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data

bioinformatics more details view paper
  • Downloaded 718 times
  • Download rankings, all-time:
    • Site-wide: 19,821 out of 92,068
    • In bioinformatics: 2,914 out of 8,636
  • Year to date:
    • Site-wide: 48,761 out of 92,068
  • Since beginning of last month:
    • Site-wide: 47,358 out of 92,068

MechRNA: prediction of lncRNA mechanisms from RNA-RNA and RNA-protein interactions

bioinformatics more details view paper
  • Downloaded 710 times
  • Download rankings, all-time:
    • Site-wide: 20,138 out of 92,068
    • In bioinformatics: 2,946 out of 8,636
  • Year to date:
    • Site-wide: 76,176 out of 92,068
  • Since beginning of last month:
    • Site-wide: 79,653 out of 92,068

deStruct: Accurate Rearrangement Detection using Breakpoint Specific Realignment

bioinformatics more details view paper
  • Downloaded 690 times
  • Download rankings, all-time:
    • Site-wide: 21,001 out of 92,068
    • In bioinformatics: 3,045 out of 8,636
  • Year to date:
    • Site-wide: 67,087 out of 92,068
  • Since beginning of last month:
    • Site-wide: 48,009 out of 92,068

Computational proteogenomic identification and functional interpretation of translated fusions and micro structural variations in cancer

bioinformatics more details view paper
  • Downloaded 499 times
  • Download rankings, all-time:
    • Site-wide: 32,515 out of 92,068
    • In bioinformatics: 4,184 out of 8,636
  • Year to date:
    • Site-wide: 60,684 out of 92,068
  • Since beginning of last month:
    • Site-wide: 67,345 out of 92,068

Tumor Phylogeny Topology Inference via Deep Learning

bioinformatics more details view paper
  • Downloaded 459 times
  • Download rankings, all-time:
    • Site-wide: 35,911 out of 92,068
    • In bioinformatics: 4,484 out of 8,636
  • Year to date:
    • Site-wide: 5,375 out of 92,068
  • Since beginning of last month:
    • Site-wide: 13,247 out of 92,068

Combinatorial Detection of Conserved Alteration Patterns for Identifying Cancer Subnetworks

systems biology more details view paper
  • Downloaded 442 times
  • Download rankings, all-time:
    • Site-wide: 37,561 out of 92,068
    • In systems biology: 1,068 out of 2,358
  • Year to date:
    • Site-wide: 66,089 out of 92,068
  • Since beginning of last month:
    • Site-wide: 59,567 out of 92,068

PhISCS-BnB: A Fast Branch and Bound Algorithm for the Perfect Tumor Phylogeny Reconstruction Problem

bioinformatics more details view paper
  • Downloaded 401 times
  • Download rankings, all-time:
    • Site-wide: 41,731 out of 92,068
    • In bioinformatics: 5,025 out of 8,636
  • Year to date:
    • Site-wide: 6,629 out of 92,068
  • Since beginning of last month:
    • Site-wide: 19,648 out of 92,068

Identification of Conserved Evolutionary Trajectories in Tumors

bioinformatics more details view paper
  • Downloaded 357 times
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    • Site-wide: 47,008 out of 92,068
    • In bioinformatics: 5,452 out of 8,636
  • Year to date:
    • Site-wide: 7,916 out of 92,068
  • Since beginning of last month:
    • Site-wide: 18,812 out of 92,068

Combinatorial Algorithms for Strain Level Metagenomic Microbial Detection and Quantification

bioinformatics more details view paper
  • Downloaded 269 times
  • Download rankings, all-time:
    • Site-wide: 59,532 out of 92,068
    • In bioinformatics: 6,410 out of 8,636
  • Year to date:
    • Site-wide: 12,246 out of 92,068
  • Since beginning of last month:
    • Site-wide: 5,539 out of 92,068

Studying the history of tumor evolution from single-cell sequencing data by exploring the space of binary matrices

bioinformatics more details view paper
  • Downloaded 82 times
  • Download rankings, all-time:
    • Site-wide: 87,008 out of 92,068
    • In bioinformatics: 8,299 out of 8,636
  • Year to date:
    • Site-wide: 54,182 out of 92,068
  • Since beginning of last month:
    • Site-wide: 3,294 out of 92,068

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