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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 70,857 bioRxiv papers from 309,241 authors.

Author: Robert Hoehndorf

Rankings

  • All-time downloads: 10,074 (rank: 4,704 (tie) out of 309,208)
  • Categories:
    • bioinformatics: 9,432 (rank: 380 out of 26,888)
    • systems biology: 642 (rank: 3,522 (tie) out of 9,289)

Downloads per author, site-wide

Preprints

FALDO: A semantic standard for describing the location of nucleotide and protein feature annotation.

bioinformatics more details view paper
  • Downloaded 2,308 times
  • Download rankings, all-time:
    • Site-wide: 2,009 out of 70,853
    • In bioinformatics: 409 out of 6,936
  • Year to date:
    • Site-wide: 37,128 out of 70,853
  • Since beginning of last month:
    • Site-wide: 26,810 out of 70,853

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

bioinformatics more details view paper
  • Downloaded 1,160 times
  • Download rankings, all-time:
    • Site-wide: 6,475 out of 70,853
    • In bioinformatics: 1,201 out of 6,936
  • Year to date:
    • Site-wide: 2,781 out of 70,853
  • Since beginning of last month:
    • Site-wide: 3,412 out of 70,853

Drug repurposing through joint learning on knowledge graphs and literature

bioinformatics more details view paper
  • Downloaded 921 times
  • Download rankings, all-time:
    • Site-wide: 9,495 out of 70,853
    • In bioinformatics: 1,638 out of 6,936
  • Year to date:
    • Site-wide: 9,804 out of 70,853
  • Since beginning of last month:
    • Site-wide: 27,160 out of 70,853

DeepPVP: phenotype-based prioritization of causative variants using deep learning

bioinformatics more details view paper
  • Downloaded 742 times
  • Download rankings, all-time:
    • Site-wide: 13,172 out of 70,853
    • In bioinformatics: 2,128 out of 6,936
  • Year to date:
    • Site-wide: 69,317 out of 70,853
  • Since beginning of last month:
    • Site-wide: 25,992 out of 70,853

DeepGOPlus: Improved protein function prediction from sequence

bioinformatics more details view paper
  • Downloaded 645 times
  • Download rankings, all-time:
    • Site-wide: 16,162 out of 70,853
    • In bioinformatics: 2,497 out of 6,936
  • Year to date:
    • Site-wide: 5,564 out of 70,853
  • Since beginning of last month:
    • Site-wide: 4,540 out of 70,853

Notions of similarity for computational biology models

systems biology more details view paper
  • Downloaded 642 times
  • Download rankings, all-time:
    • Site-wide: 16,265 out of 70,853
    • In systems biology: 474 out of 1,949
  • Year to date:
    • Site-wide: 50,341 out of 70,853
  • Since beginning of last month:
    • Site-wide: 59,822 out of 70,853

Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings

bioinformatics more details view paper
  • Downloaded 630 times
  • Download rankings, all-time:
    • Site-wide: 16,705 out of 70,853
    • In bioinformatics: 2,566 out of 6,936
  • Year to date:
    • Site-wide: 10,065 out of 70,853
  • Since beginning of last month:
    • Site-wide: 21,565 out of 70,853

Taxonomic propagation of phenotypic features predict host pathogen interactions

bioinformatics more details view paper
  • Downloaded 360 times
  • Download rankings, all-time:
    • Site-wide: 32,959 out of 70,853
    • In bioinformatics: 4,166 out of 6,936
  • Year to date:
    • Site-wide: 41,524 out of 70,853
  • Since beginning of last month:
    • Site-wide: 28,042 out of 70,853

Formal axioms in biomedical ontologies improve analysis and interpretation of associated data

bioinformatics more details view paper
  • Downloaded 355 times
  • Download rankings, all-time:
    • Site-wide: 33,453 out of 70,853
    • In bioinformatics: 4,214 out of 6,936
  • Year to date:
    • Site-wide: 24,278 out of 70,853
  • Since beginning of last month:
    • Site-wide: 39,998 out of 70,853

Ontology-based prediction of cancer driver genes

bioinformatics more details view paper
  • Downloaded 337 times
  • Download rankings, all-time:
    • Site-wide: 35,169 out of 70,853
    • In bioinformatics: 4,374 out of 6,936
  • Year to date:
    • Site-wide: 25,597 out of 70,853
  • Since beginning of last month:
    • Site-wide: 34,504 out of 70,853

Semantic Disease Gene Embeddings (SmuDGE): phenotype-based disease gene prioritization without phenotypes

bioinformatics more details view paper
  • Downloaded 327 times
  • Download rankings, all-time:
    • Site-wide: 36,291 out of 70,853
    • In bioinformatics: 4,478 out of 6,936
  • Year to date:
    • Site-wide: 62,155 out of 70,853
  • Since beginning of last month:
    • Site-wide: 61,156 out of 70,853

DeepPheno: Predicting single gene knockout phenotypes

bioinformatics more details view paper
  • Downloaded 303 times
  • Download rankings, all-time:
    • Site-wide: 38,744 out of 70,853
    • In bioinformatics: 4,690 out of 6,936
  • Year to date:
    • Site-wide: 24,598 out of 70,853
  • Since beginning of last month:
    • Site-wide: 7,627 out of 70,853

VSIM: Visualization and simulation of variants in personal genomes with an application to premarital testing

bioinformatics more details view paper
  • Downloaded 265 times
  • Download rankings, all-time:
    • Site-wide: 43,143 out of 70,853
    • In bioinformatics: 5,033 out of 6,936
  • Year to date:
    • Site-wide: 50,056 out of 70,853
  • Since beginning of last month:
    • Site-wide: 50,528 out of 70,853

Quantitative evaluation of ontology design patterns for combining pathology and anatomy ontologies

bioinformatics more details view paper
  • Downloaded 227 times
  • Download rankings, all-time:
    • Site-wide: 48,191 out of 70,853
    • In bioinformatics: 5,404 out of 6,936
  • Year to date:
    • Site-wide: 68,426 out of 70,853
  • Since beginning of last month:
    • Site-wide: 41,492 out of 70,853

OligoPVP: Phenotype-driven analysis of individual genomic information to prioritize oligogenic disease variants

bioinformatics more details view paper
  • Downloaded 216 times
  • Download rankings, all-time:
    • Site-wide: 49,666 out of 70,853
    • In bioinformatics: 5,532 out of 6,936
  • Year to date:
    • Site-wide: 66,501 out of 70,853
  • Since beginning of last month:
    • Site-wide: 64,526 out of 70,853

Ontology-based validation and identification of regulatory phenotypes

bioinformatics more details view paper
  • Downloaded 191 times
  • Download rankings, all-time:
    • Site-wide: 53,277 out of 70,853
    • In bioinformatics: 5,798 out of 6,936
  • Year to date:
    • Site-wide: 60,291 out of 70,853
  • Since beginning of last month:
    • Site-wide: 61,753 out of 70,853

Ontology based mining of pathogen-disease associations from literature

bioinformatics more details view paper
  • Downloaded 181 times
  • Download rankings, all-time:
    • Site-wide: 54,796 out of 70,853
    • In bioinformatics: 5,903 out of 6,936
  • Year to date:
    • Site-wide: 65,647 out of 70,853
  • Since beginning of last month:
    • Site-wide: 58,247 out of 70,853

PathoPhenoDB: linking human pathogens to their disease phenotypes in support of infectious disease research

bioinformatics more details view paper
  • Downloaded 155 times
  • Download rankings, all-time:
    • Site-wide: 58,695 out of 70,853
    • In bioinformatics: 6,179 out of 6,936
  • Year to date:
    • Site-wide: 64,220 out of 70,853
  • Since beginning of last month:
    • Site-wide: 50,323 out of 70,853

DDIEM: Drug Database for Inborn Errors of Metabolism

bioinformatics more details view paper
  • Downloaded 109 times
  • Download rankings, all-time:
    • Site-wide: 65,132 out of 70,853
    • In bioinformatics: 6,590 out of 6,936
  • Year to date:
    • Site-wide: 975 out of 70,853
  • Since beginning of last month:
    • Site-wide: None out of 70,853

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