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Author: Robert Hoehndorf

Rankings

  • All-time downloads: 15,333 (rank: 9,408 (tie) out of 509,770)
  • Categories:
    • bioinformatics: 14,362 (rank: 364 out of 36,842)
    • health informatics: 267 (rank: 1,490 (tie) out of 2,331)
    • systems biology: 704 (rank: 5,364 (tie) out of 12,790)

Downloads per author, site-wide

Preprints

FALDO: A semantic standard for describing the location of nucleotide and protein feature annotation.

bioinformatics more details view paper
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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

bioinformatics more details view paper
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    • In bioinformatics: 1,303 out of 9,572
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    • Site-wide: 24,242 out of 118,180

Drug repurposing through joint learning on knowledge graphs and literature

bioinformatics more details view paper
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    • In bioinformatics: 1,897 out of 9,572
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Machine learning with biomedical ontologies

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    • In bioinformatics: 2,089 out of 9,572
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DeepPVP: phenotype-based prioritization of causative variants using deep learning

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    • In bioinformatics: 2,608 out of 9,572
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Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings

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    • In bioinformatics: 2,618 out of 9,572
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DeepGOPlus: Improved protein function prediction from sequence

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Notions of similarity for computational biology models

systems biology more details view paper
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    • In systems biology: 663 out of 2,634
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DeepPheno: Predicting single gene loss-of-function phenotypes using an ontology-aware hierarchical classifier

bioinformatics more details view paper
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    • In bioinformatics: 3,783 out of 9,572
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    • Site-wide: 46,829 out of 118,180

Taxonomic propagation of phenotypic features predict host pathogen interactions

bioinformatics more details view paper
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    • In bioinformatics: 4,943 out of 9,572
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    • Site-wide: 65,058 out of 118,180

Formal axioms in biomedical ontologies improve analysis and interpretation of associated data

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    • In bioinformatics: 5,258 out of 9,572
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    • Site-wide: 77,902 out of 118,180

Ontology-based prediction of cancer driver genes

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    • In bioinformatics: 5,581 out of 9,572
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    • Site-wide: 93,757 out of 118,180

DeepViral: infectious disease phenotypes improve prediction of novel virus–host interactions

bioinformatics more details view paper
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    • In bioinformatics: 5,731 out of 9,572
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    • Site-wide: 18,922 out of 118,180
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    • Site-wide: None out of 118,180

Semantic Disease Gene Embeddings (SmuDGE): phenotype-based disease gene prioritization without phenotypes

bioinformatics more details view paper
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    • In bioinformatics: 5,772 out of 9,572
  • Year to date:
    • Site-wide: 105,447 out of 118,180
  • Since beginning of last month:
    • Site-wide: 111,815 out of 118,180

VSIM: Visualization and simulation of variants in personal genomes with an application to premarital testing

bioinformatics more details view paper
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    • Site-wide: 61,465 out of 118,180
    • In bioinformatics: 6,131 out of 9,572
  • Year to date:
    • Site-wide: 84,064 out of 118,180
  • Since beginning of last month:
    • Site-wide: 96,935 out of 118,180

Predicting candidate genes from phenotypes, functions, and anatomical site of expression

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    • In bioinformatics: 6,663 out of 9,572
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    • Site-wide: 25,344 out of 118,180
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    • Site-wide: 29,757 out of 118,180

DDIEM: Drug Database for Inborn Errors of Metabolism

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    • In bioinformatics: 6,690 out of 9,572
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    • Site-wide: 29,713 out of 118,180

Quantitative evaluation of ontology design patterns for combining pathology and anatomy ontologies

bioinformatics more details view paper
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    • In bioinformatics: 6,949 out of 9,572
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    • Site-wide: 95,421 out of 118,180

OligoPVP: Phenotype-driven analysis of individual genomic information to prioritize oligogenic disease variants

bioinformatics more details view paper
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    • Site-wide: 76,559 out of 118,180
    • In bioinformatics: 7,095 out of 9,572
  • Year to date:
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  • Since beginning of last month:
    • Site-wide: 114,602 out of 118,180

Modeling quantitative traits for COVID-19 case reports

health informatics more details view paper
  • Downloaded 267 times
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    • In health informatics: 230 out of 412
  • Year to date:
    • Site-wide: 30,248 out of 118,180
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    • Site-wide: 49,287 out of 118,180

Ontology-based validation and identification of regulatory phenotypes

bioinformatics more details view paper
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    • In bioinformatics: 7,368 out of 9,572
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    • Site-wide: 95,320 out of 118,180

Ontology based mining of pathogen-disease associations from literature

bioinformatics more details view paper
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    • In bioinformatics: 7,480 out of 9,572
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  • Since beginning of last month:
    • Site-wide: 102,992 out of 118,180

PathoPhenoDB: linking human pathogens to their disease phenotypes in support of infectious disease research

bioinformatics more details view paper
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    • In bioinformatics: 7,820 out of 9,572
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    • Site-wide: 105,290 out of 118,180

D4: Deep Drug-drug interaction Discovery and Demystification

bioinformatics more details view paper
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    • In bioinformatics: 7,979 out of 9,572
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    • Site-wide: 74,610 out of 118,180

Self-normalizing learning on biomedical ontologies using a deep Siamese neural network

bioinformatics more details view paper
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    • In bioinformatics: 8,235 out of 9,572
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A fast, accurate, and generalisable heuristic-based negation detection algorithm for clinical text

bioinformatics more details view paper
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    • In bioinformatics: 8,246 out of 9,572
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    • Site-wide: 73,928 out of 118,180

Towards semantic interoperability: finding and repairing hidden contradictions in biomedical ontologies

bioinformatics more details view paper
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    • In bioinformatics: 8,682 out of 9,572
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    • Site-wide: 100,888 out of 118,180

Komenti: A semantic text mining framework

bioinformatics more details view paper
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    • In bioinformatics: 8,940 out of 9,572
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    • Site-wide: 59,495 out of 118,180

Improved characterisation of clinical text through ontology-based vocabulary expansion

bioinformatics more details view paper
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    • In bioinformatics: 8,955 out of 9,572
  • Year to date:
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  • Since beginning of last month:
    • Site-wide: 46,508 out of 118,180

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