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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 70,482 bioRxiv papers from 307,800 authors.

Author: Matthew J Simpson

Rankings

  • All-time downloads: 9,876 (rank: 4,850 out of 307,800)
  • Categories:
    • biophysics: 6,510 (rank: 100 out of 12,338)
    • cancer biology: 617 (rank: 6,245 (tie) out of 19,999)
    • cell biology: 928 (rank: 3,573 (tie) out of 21,296)
    • developmental biology: 708 (rank: 2,619 out of 11,827)
    • synthetic biology: 386 (rank: 2,269 (tie) out of 3,083)
    • systems biology: 727 (rank: 3,082 (tie) out of 9,271)

Downloads per author, site-wide

Preprints

Exact solutions of linear reaction-diffusion processes on a uniformly growing domain: Criteria for successful colonization

developmental biology more details view paper
  • Downloaded 708 times
  • Download rankings, all-time:
    • Site-wide: 14,081 out of 70,482
    • In developmental biology: 319 out of 2,104
  • Year to date:
    • Site-wide: 32,466 out of 70,482
  • Since beginning of last month:
    • Site-wide: 44,187 out of 70,482

Quantifying Rates Of Cell Migration And Cell Proliferation In Co-Culture Barrier Assays Reveals How Skin And Melanoma Cells Interact During Melanoma Spreading And Invasion

cancer biology more details view paper
  • Downloaded 617 times
  • Download rankings, all-time:
    • Site-wide: 17,117 out of 70,482
    • In cancer biology: 520 out of 2,399
  • Year to date:
    • Site-wide: 24,254 out of 70,482
  • Since beginning of last month:
    • Site-wide: 28,346 out of 70,482

Choosing an appropriate modelling framework for analysing multispecies co-culture cell biology experiments

cell biology more details view paper
  • Downloaded 557 times
  • Download rankings, all-time:
    • Site-wide: 19,685 out of 70,482
    • In cell biology: 855 out of 3,448
  • Year to date:
    • Site-wide: 46,207 out of 70,482
  • Since beginning of last month:
    • Site-wide: 56,050 out of 70,482

Logistic proliferation of cells in scratch assays is delayed

biophysics more details view paper
  • Downloaded 522 times
  • Download rankings, all-time:
    • Site-wide: 21,454 out of 70,482
    • In biophysics: 775 out of 3,003
  • Year to date:
    • Site-wide: 25,344 out of 70,482
  • Since beginning of last month:
    • Site-wide: 25,434 out of 70,482

Accelerating computational Bayesian inference for stochastic biochemical reaction network models using multilevel Monte Carlo sampling

systems biology more details view paper
  • Downloaded 520 times
  • Download rankings, all-time:
    • Site-wide: 21,547 out of 70,482
    • In systems biology: 631 out of 1,943
  • Year to date:
    • Site-wide: 50,875 out of 70,482
  • Since beginning of last month:
    • Site-wide: 67,858 out of 70,482

Quantifying transport in crowded biochemical environments

biophysics more details view paper
  • Downloaded 464 times
  • Download rankings, all-time:
    • Site-wide: 24,780 out of 70,482
    • In biophysics: 932 out of 3,003
  • Year to date:
    • Site-wide: 59,031 out of 70,482
  • Since beginning of last month:
    • Site-wide: 62,971 out of 70,482

Co-operation, competition and crowding: a discrete framework linking Allee kinetics, nonlinear diffusion, shocks and sharp-fronted travelling waves

biophysics more details view paper
  • Downloaded 464 times
  • Download rankings, all-time:
    • Site-wide: 24,770 out of 70,482
    • In biophysics: 933 out of 3,003
  • Year to date:
    • Site-wide: 30,479 out of 70,482
  • Since beginning of last month:
    • Site-wide: 27,619 out of 70,482

Stochastic simulation tools and continuum models for describing two-dimensional collective cell spreading with universal growth functions

biophysics more details view paper
  • Downloaded 456 times
  • Download rankings, all-time:
    • Site-wide: 25,346 out of 70,482
    • In biophysics: 955 out of 3,003
  • Year to date:
    • Site-wide: 55,960 out of 70,482
  • Since beginning of last month:
    • Site-wide: 39,084 out of 70,482

Using experimental data and information criteria to guide model selection for reaction--diffusion problems in mathematical biology

biophysics more details view paper
  • Downloaded 422 times
  • Download rankings, all-time:
    • Site-wide: 27,664 out of 70,482
    • In biophysics: 1,065 out of 3,003
  • Year to date:
    • Site-wide: 33,559 out of 70,482
  • Since beginning of last month:
    • Site-wide: 38,774 out of 70,482

Process noise distinguishes between indistinguishable population dynamics

synthetic biology more details view paper
  • Downloaded 386 times
  • Download rankings, all-time:
    • Site-wide: 30,476 out of 70,482
    • In synthetic biology: 451 out of 670
  • Year to date:
    • Site-wide: 64,510 out of 70,482
  • Since beginning of last month:
    • Site-wide: 50,223 out of 70,482

Inferring parameters for a lattice-free model of cell migration and proliferation using experimental data

cell biology more details view paper
  • Downloaded 371 times
  • Download rankings, all-time:
    • Site-wide: 31,813 out of 70,482
    • In cell biology: 1,498 out of 3,448
  • Year to date:
    • Site-wide: 19,450 out of 70,482
  • Since beginning of last month:
    • Site-wide: 22,830 out of 70,482

Mechanistic and experimental models of cell migration reveal the importance of intercellular interactions in cell invasion

biophysics more details view paper
  • Downloaded 351 times
  • Download rankings, all-time:
    • Site-wide: 33,659 out of 70,482
    • In biophysics: 1,325 out of 3,003
  • Year to date:
    • Site-wide: 35,415 out of 70,482
  • Since beginning of last month:
    • Site-wide: 19,928 out of 70,482

Exact solutions of coupled multispecies linear reaction-diffusion equations on a uniformly growing domain

biophysics more details view paper
  • Downloaded 343 times
  • Download rankings, all-time:
    • Site-wide: 34,433 out of 70,482
    • In biophysics: 1,368 out of 3,003
  • Year to date:
    • Site-wide: 54,537 out of 70,482
  • Since beginning of last month:
    • Site-wide: 65,988 out of 70,482

Continuum approximations for lattice-free multi-species models of collective cell migration

biophysics more details view paper
  • Downloaded 340 times
  • Download rankings, all-time:
    • Site-wide: 34,720 out of 70,482
    • In biophysics: 1,381 out of 3,003
  • Year to date:
    • Site-wide: 49,481 out of 70,482
  • Since beginning of last month:
    • Site-wide: 59,745 out of 70,482

Mathematical models incorporating a multi-stage cell cycle replicate normally-hidden inherent synchronisation in cell proliferation

biophysics more details view paper
  • Downloaded 317 times
  • Download rankings, all-time:
    • Site-wide: 37,043 out of 70,482
    • In biophysics: 1,480 out of 3,003
  • Year to date:
    • Site-wide: 30,883 out of 70,482
  • Since beginning of last month:
    • Site-wide: 59,973 out of 70,482

Stochastic models of cell invasion with fluorescent cell cycle indicators

biophysics more details view paper
  • Downloaded 315 times
  • Download rankings, all-time:
    • Site-wide: 37,218 out of 70,482
    • In biophysics: 1,489 out of 3,003
  • Year to date:
    • Site-wide: 31,888 out of 70,482
  • Since beginning of last month:
    • Site-wide: 24,736 out of 70,482

Spatial structure arising from chase-escape interactions with crowding

biophysics more details view paper
  • Downloaded 311 times
  • Download rankings, all-time:
    • Site-wide: 37,613 out of 70,482
    • In biophysics: 1,512 out of 3,003
  • Year to date:
    • Site-wide: 30,607 out of 70,482
  • Since beginning of last month:
    • Site-wide: 17,071 out of 70,482

Revisiting the Fisher-KPP equation to interpret the spreading-extinction dichotomy

biophysics more details view paper
  • Downloaded 286 times
  • Download rankings, all-time:
    • Site-wide: 40,463 out of 70,482
    • In biophysics: 1,659 out of 3,003
  • Year to date:
    • Site-wide: 15,640 out of 70,482
  • Since beginning of last month:
    • Site-wide: 24,123 out of 70,482

Quantifying the efficacy of first aid treatments for burn injuries using mathematical modelling and in vivo porcine experiments

biophysics more details view paper
  • Downloaded 284 times
  • Download rankings, all-time:
    • Site-wide: 40,633 out of 70,482
    • In biophysics: 1,671 out of 3,003
  • Year to date:
    • Site-wide: 53,835 out of 70,482
  • Since beginning of last month:
    • Site-wide: 60,676 out of 70,482

Parameterising continuum models of heat transfer in heterogeneous living skin using experimental data

biophysics more details view paper
  • Downloaded 269 times
  • Download rankings, all-time:
    • Site-wide: 42,472 out of 70,482
    • In biophysics: 1,767 out of 3,003
  • Year to date:
    • Site-wide: 21,416 out of 70,482
  • Since beginning of last month:
    • Site-wide: 11,527 out of 70,482

Accurate and efficient discretisations for stochastic models providing near agent-based spatial resolution at low computational cost

biophysics more details view paper
  • Downloaded 268 times
  • Download rankings, all-time:
    • Site-wide: 42,541 out of 70,482
    • In biophysics: 1,778 out of 3,003
  • Year to date:
    • Site-wide: 18,045 out of 70,482
  • Since beginning of last month:
    • Site-wide: 51,877 out of 70,482

Discrete and continuum approximations for collective cell migration in a scratch assay with cell size dynamics

biophysics more details view paper
  • Downloaded 267 times
  • Download rankings, all-time:
    • Site-wide: 42,692 out of 70,482
    • In biophysics: 1,788 out of 3,003
  • Year to date:
    • Site-wide: 51,717 out of 70,482
  • Since beginning of last month:
    • Site-wide: 38,277 out of 70,482

A computational modelling framework to quantify the effects of passaging cell lines

biophysics more details view paper
  • Downloaded 258 times
  • Download rankings, all-time:
    • Site-wide: 43,788 out of 70,482
    • In biophysics: 1,834 out of 3,003
  • Year to date:
    • Site-wide: None out of 70,482
  • Since beginning of last month:
    • Site-wide: 40,530 out of 70,482

A Bayesian computational approach to explore the optimal duration of a cell proliferation assay

biophysics more details view paper
  • Downloaded 251 times
  • Download rankings, all-time:
    • Site-wide: 44,677 out of 70,482
    • In biophysics: 1,874 out of 3,003
  • Year to date:
    • Site-wide: 27,786 out of 70,482
  • Since beginning of last month:
    • Site-wide: 48,954 out of 70,482

A free boundary model of epithelial dynamics

systems biology more details view paper
  • Downloaded 207 times
  • Download rankings, all-time:
    • Site-wide: 50,619 out of 70,482
    • In systems biology: 1,529 out of 1,943
  • Year to date:
    • Site-wide: 16,584 out of 70,482
  • Since beginning of last month:
    • Site-wide: 47,125 out of 70,482

Continuum descriptions of spatial spreading for heterogeneous cell populations: theory and experiment

biophysics more details view paper
  • Downloaded 181 times
  • Download rankings, all-time:
    • Site-wide: 54,546 out of 70,482
    • In biophysics: 2,358 out of 3,003
  • Year to date:
    • Site-wide: 48,274 out of 70,482
  • Since beginning of last month:
    • Site-wide: 64,830 out of 70,482

Examining go-or-grow using fluorescent cell-cycle indicators and cell cycle-inhibiting drugs

biophysics more details view paper
  • Downloaded 141 times
  • Download rankings, all-time:
    • Site-wide: 60,480 out of 70,482
    • In biophysics: 2,615 out of 3,003
  • Year to date:
    • Site-wide: 9,632 out of 70,482
  • Since beginning of last month:
    • Site-wide: 39,340 out of 70,482

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