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Author: David Koslicki

Rankings

  • All-time downloads: 19,188 (rank: 2,607 out of 359,620)
  • Categories:
    • bioinformatics: 14,359 (rank: 228 out of 31,149)
    • ecology: 288 (rank: 8,922 (tie) out of 15,215)
    • microbiology: 4,165 (rank: 1,286 out of 39,466)
    • systems biology: 376 (rank: 6,980 (tie) out of 10,774)

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Preprints

Critical Assessment of Metagenome Interpretation − a benchmark of computational metagenomics software

bioinformatics more details view paper
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    • In bioinformatics: 59 out of 8,004
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    • Site-wide: 17,849 out of 83,434
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    • Site-wide: 19,458 out of 83,434

Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia

microbiology more details view paper
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    • In microbiology: 96 out of 7,101
  • Year to date:
    • Site-wide: 12,370 out of 83,434
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    • Site-wide: 12,625 out of 83,434

Improving Min Hash via the Containment Index with applications to Metagenomic Analysis

bioinformatics more details view paper
  • Downloaded 2,091 times
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    • Site-wide: 3,117 out of 83,434
    • In bioinformatics: 582 out of 8,004
  • Year to date:
    • Site-wide: 10,668 out of 83,434
  • Since beginning of last month:
    • Site-wide: 10,913 out of 83,434

MiCoP: Microbial Community Profiling method for detecting viral and fungal organisms in metagenomic samples

bioinformatics more details view paper
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    • In bioinformatics: 1,174 out of 8,004
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    • Site-wide: 72,329 out of 83,434

MetaPalette: A K-mer painting approach for metagenomic taxonomic profiling and quantification of novel strain variation

bioinformatics more details view paper
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    • Site-wide: 7,259 out of 83,434
    • In bioinformatics: 1,290 out of 8,004
  • Year to date:
    • Site-wide: 70,358 out of 83,434
  • Since beginning of last month:
    • Site-wide: 74,305 out of 83,434

Improving the usability and comprehensiveness of microbial databases

bioinformatics more details view paper
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    • In bioinformatics: 2,527 out of 8,004
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  • Since beginning of last month:
    • Site-wide: 19,792 out of 83,434

Reference-free comparison of microbial communities via de Bruijn graphs

bioinformatics more details view paper
  • Downloaded 744 times
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    • Site-wide: 16,702 out of 83,434
    • In bioinformatics: 2,542 out of 8,004
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  • Since beginning of last month:
    • Site-wide: 55,597 out of 83,434

EMDUnifrac: Exact linear time computation of the Unifrac metric and identification of differentially abundant organisms

microbiology more details view paper
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    • Site-wide: 28,626 out of 83,434
    • In microbiology: 1,827 out of 7,101
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    • Site-wide: 47,775 out of 83,434

Metalign: Efficient alignment-based metagenomic profiling via containment min hash

bioinformatics more details view paper
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    • Site-wide: 29,579 out of 83,434
    • In bioinformatics: 3,905 out of 8,004
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    • Site-wide: 2,624 out of 83,434
  • Since beginning of last month:
    • Site-wide: 11,761 out of 83,434

Leveraging Distributed Biomedical Knowledge Sources to Discover Novel Uses for Known Drugs

bioinformatics more details view paper
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    • Site-wide: 29,710 out of 83,434
    • In bioinformatics: 3,915 out of 8,004
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    • Site-wide: 18,111 out of 83,434
  • Since beginning of last month:
    • Site-wide: 17,787 out of 83,434

Assessing taxonomic metagenome profilers with OPAL

bioinformatics more details view paper
  • Downloaded 416 times
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    • Site-wide: 35,962 out of 83,434
    • In bioinformatics: 4,479 out of 8,004
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    • Site-wide: 63,992 out of 83,434
  • Since beginning of last month:
    • Site-wide: 70,521 out of 83,434

IndeCut evaluates performance of network motif discovery algorithms

systems biology more details view paper
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    • Site-wide: 39,970 out of 83,434
    • In systems biology: 1,176 out of 2,210
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  • Since beginning of last month:
    • Site-wide: 56,462 out of 83,434

Exact probabilities for the indeterminacy of complex networks as perceived through press perturbations

ecology more details view paper
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  • Download rankings, all-time:
    • Site-wide: 51,072 out of 83,434
    • In ecology: 1,736 out of 3,648
  • Year to date:
    • Site-wide: 77,459 out of 83,434
  • Since beginning of last month:
    • Site-wide: 71,020 out of 83,434

Finer Metagenomic Reconstruction via Biodiversity Optimization

bioinformatics more details view paper
  • Downloaded 84 times
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    • Site-wide: 79,704 out of 83,434
    • In bioinformatics: 7,726 out of 8,004
  • Year to date:
    • Site-wide: 33,831 out of 83,434
  • Since beginning of last month:
    • Site-wide: 75,803 out of 83,434

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