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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,915 bioRxiv papers from 266,490 authors.

Author: Matthew Stephens

Rankings

  • All-time downloads: 42,639 (rank: 310 out of 266,490)
  • Categories:
    • bioinformatics: 9,458 (rank: 306 out of 23,182)
    • evolutionary biology: 1,304 (rank: 2,045 (tie) out of 14,430)
    • genetics: 17,576 (rank: 367 out of 25,354)
    • genomics: 14,301 (rank: 532 out of 30,388)

Downloads per author, site-wide

Preprints

Variational Inference of Population Structure in Large SNP Datasets

genetics more details view paper
  • Downloaded 5,900 times
  • Download rankings, all-time:
    • Site-wide: 280 out of 57,915
    • In genetics: 33 out of 3,319
  • Year to date:
    • Site-wide: 7,305 out of 57,915
  • Since beginning of last month:
    • Site-wide: 6,350 out of 57,915

Visualizing the Structure of RNA-seq Expression Data using Grade of Membership Models

genetics more details view paper
  • Downloaded 3,163 times
  • Download rankings, all-time:
    • Site-wide: 909 out of 57,915
    • In genetics: 87 out of 3,319
  • Year to date:
    • Site-wide: 21,724 out of 57,915
  • Since beginning of last month:
    • Site-wide: 28,934 out of 57,915

Bayesian large-scale multiple regression with summary statistics from genome-wide association studies

genetics more details view paper
  • Downloaded 2,836 times
  • Download rankings, all-time:
    • Site-wide: 1,111 out of 57,915
    • In genetics: 107 out of 3,319
  • Year to date:
    • Site-wide: 22,537 out of 57,915
  • Since beginning of last month:
    • Site-wide: 31,576 out of 57,915

False Discovery Rates: A New Deal.

bioinformatics more details view paper
  • Downloaded 2,813 times
  • Download rankings, all-time:
    • Site-wide: 1,127 out of 57,915
    • In bioinformatics: 233 out of 5,899
  • Year to date:
    • Site-wide: 27,712 out of 57,915
  • Since beginning of last month:
    • Site-wide: 31,257 out of 57,915

Visualizing spatial population structure with estimated effective migration surfaces

genetics more details view paper
  • Downloaded 2,484 times
  • Download rankings, all-time:
    • Site-wide: 1,403 out of 57,915
    • In genetics: 139 out of 3,319
  • Year to date:
    • Site-wide: 30,916 out of 57,915
  • Since beginning of last month:
    • Site-wide: 19,417 out of 57,915

Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling

genomics more details view paper
  • Downloaded 2,429 times
  • Download rankings, all-time:
    • Site-wide: 1,473 out of 57,915
    • In genomics: 342 out of 4,060
  • Year to date:
    • Site-wide: 47,894 out of 57,915
  • Since beginning of last month:
    • Site-wide: 41,064 out of 57,915

Flexible statistical methods for estimating and testing effects in genomic studies with multiple conditions

genomics more details view paper
  • Downloaded 2,258 times
  • Download rankings, all-time:
    • Site-wide: 1,678 out of 57,915
    • In genomics: 377 out of 4,060
  • Year to date:
    • Site-wide: 9,948 out of 57,915
  • Since beginning of last month:
    • Site-wide: 14,703 out of 57,915

Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis

genomics more details view paper
  • Downloaded 2,205 times
  • Download rankings, all-time:
    • Site-wide: 1,737 out of 57,915
    • In genomics: 387 out of 4,060
  • Year to date:
    • Site-wide: 233 out of 57,915
  • Since beginning of last month:
    • Site-wide: 488 out of 57,915

A large-scale genome-wide enrichment analysis identifies new trait-associated genes, pathways and tissues across 31 human phenotypes

genomics more details view paper
  • Downloaded 2,148 times
  • Download rankings, all-time:
    • Site-wide: 1,816 out of 57,915
    • In genomics: 403 out of 4,060
  • Year to date:
    • Site-wide: 16,732 out of 57,915
  • Since beginning of last month:
    • Site-wide: 21,590 out of 57,915

A simple new approach to variable selection in regression, with application to genetic fine-mapping

bioinformatics more details view paper
  • Downloaded 1,853 times
  • Download rankings, all-time:
    • Site-wide: 2,334 out of 57,915
    • In bioinformatics: 485 out of 5,899
  • Year to date:
    • Site-wide: 537 out of 57,915
  • Since beginning of last month:
    • Site-wide: 744 out of 57,915

A simple model-based approach to inferring and visualizing cancer mutation signatures

bioinformatics more details view paper
  • Downloaded 1,815 times
  • Download rankings, all-time:
    • Site-wide: 2,423 out of 57,915
    • In bioinformatics: 497 out of 5,899
  • Year to date:
    • Site-wide: 44,355 out of 57,915
  • Since beginning of last month:
    • Site-wide: 33,053 out of 57,915

Estimating time to the common ancestor for a beneficial allele

evolutionary biology more details view paper
  • Downloaded 1,304 times
  • Download rankings, all-time:
    • Site-wide: 4,237 out of 57,915
    • In evolutionary biology: 232 out of 3,970
  • Year to date:
    • Site-wide: 44,054 out of 57,915
  • Since beginning of last month:
    • Site-wide: 47,127 out of 57,915

A new sequence logo plot to highlight enrichment and depletion

genetics more details view paper
  • Downloaded 1,176 times
  • Download rankings, all-time:
    • Site-wide: 4,981 out of 57,915
    • In genetics: 414 out of 3,319
  • Year to date:
    • Site-wide: 22,234 out of 57,915
  • Since beginning of last month:
    • Site-wide: 29,935 out of 57,915

msCentipede: Modeling heterogeneity across genomic sites improves accuracy in the inference of transcription factor binding

genomics more details view paper
  • Downloaded 1,079 times
  • Download rankings, all-time:
    • Site-wide: 5,785 out of 57,915
    • In genomics: 975 out of 4,060
  • Year to date:
    • Site-wide: 55,839 out of 57,915
  • Since beginning of last month:
    • Site-wide: 46,567 out of 57,915

Inference and visualization of DNA damage patterns using a grade of membership model

bioinformatics more details view paper
  • Downloaded 899 times
  • Download rankings, all-time:
    • Site-wide: 7,732 out of 57,915
    • In bioinformatics: 1,380 out of 5,899
  • Year to date:
    • Site-wide: 30,428 out of 57,915
  • Since beginning of last month:
    • Site-wide: 38,838 out of 57,915

Bayesian multivariate reanalysis of large genetic studies identifies many new associations

genomics more details view paper
  • Downloaded 838 times
  • Download rankings, all-time:
    • Site-wide: 8,645 out of 57,915
    • In genomics: 1,332 out of 4,060
  • Year to date:
    • Site-wide: 1,507 out of 57,915
  • Since beginning of last month:
    • Site-wide: 986 out of 57,915

CorShrink : Empirical Bayes shrinkage estimation of correlations, with applications

genetics more details view paper
  • Downloaded 823 times
  • Download rankings, all-time:
    • Site-wide: 8,905 out of 57,915
    • In genetics: 672 out of 3,319
  • Year to date:
    • Site-wide: 11,035 out of 57,915
  • Since beginning of last month:
    • Site-wide: 14,051 out of 57,915

Mendelian randomization accounting for correlated and uncorrelated pleiotropic effects using genome-wide summary statistics.

genetics more details view paper
  • Downloaded 783 times
  • Download rankings, all-time:
    • Site-wide: 9,588 out of 57,915
    • In genetics: 715 out of 3,319
  • Year to date:
    • Site-wide: 1,692 out of 57,915
  • Since beginning of last month:
    • Site-wide: 464 out of 57,915

Model-based analysis of positive selection significantly expands the list of cancer driver genes, including RNA methyltransferases

genomics more details view paper
  • Downloaded 777 times
  • Download rankings, all-time:
    • Site-wide: 9,701 out of 57,915
    • In genomics: 1,441 out of 4,060
  • Year to date:
    • Site-wide: 10,283 out of 57,915
  • Since beginning of last month:
    • Site-wide: 11,195 out of 57,915

Estimating recent migration and population size surfaces

bioinformatics more details view paper
  • Downloaded 767 times
  • Download rankings, all-time:
    • Site-wide: 9,884 out of 57,915
    • In bioinformatics: 1,719 out of 5,899
  • Year to date:
    • Site-wide: 33,706 out of 57,915
  • Since beginning of last month:
    • Site-wide: 41,603 out of 57,915

Discovery and characterization of variance QTLs in human induced pluripotent stem cells

genomics more details view paper
  • Downloaded 721 times
  • Download rankings, all-time:
    • Site-wide: 10,779 out of 57,915
    • In genomics: 1,552 out of 4,060
  • Year to date:
    • Site-wide: 10,145 out of 57,915
  • Since beginning of last month:
    • Site-wide: 35,629 out of 57,915

Genotyping Polyploids from Messy Sequencing Data

bioinformatics more details view paper
  • Downloaded 698 times
  • Download rankings, all-time:
    • Site-wide: 11,287 out of 57,915
    • In bioinformatics: 1,904 out of 5,899
  • Year to date:
    • Site-wide: 18,747 out of 57,915
  • Since beginning of last month:
    • Site-wide: 15,240 out of 57,915

Silencing Of Transposable Elements May Not Be A Major Driver Of Regulatory Evolution In Primate Induced Pluripotent Stem Cells

genomics more details view paper
  • Downloaded 656 times
  • Download rankings, all-time:
    • Site-wide: 12,342 out of 57,915
    • In genomics: 1,708 out of 4,060
  • Year to date:
    • Site-wide: 48,391 out of 57,915
  • Since beginning of last month:
    • Site-wide: 46,890 out of 57,915

Epigenetic Modifications are Associated with Inter-species Gene Expression Variation in Primates

genomics more details view paper
  • Downloaded 626 times
  • Download rankings, all-time:
    • Site-wide: 13,124 out of 57,915
    • In genomics: 1,775 out of 4,060
  • Year to date:
    • Site-wide: 50,980 out of 57,915
  • Since beginning of last month:
    • Site-wide: 52,252 out of 57,915

Variance Adaptive Shrinkage (vash): Flexible Empirical Bayes estimation of variances

bioinformatics more details view paper
  • Downloaded 613 times
  • Download rankings, all-time:
    • Site-wide: 13,503 out of 57,915
    • In bioinformatics: 2,183 out of 5,899
  • Year to date:
    • Site-wide: 52,791 out of 57,915
  • Since beginning of last month:
    • Site-wide: 47,120 out of 57,915

The Genetic Architecture of Gene Expression Levels in Wild Baboons

genomics more details view paper
  • Downloaded 564 times
  • Download rankings, all-time:
    • Site-wide: 15,176 out of 57,915
    • In genomics: 1,950 out of 4,060
  • Year to date:
    • Site-wide: 53,793 out of 57,915
  • Since beginning of last month:
    • Site-wide: 50,604 out of 57,915

A multivariate genome-wide association analysis of 10 LDL subfractions, and their response to statin treatment, in 1868 Caucasians

genetics more details view paper
  • Downloaded 411 times
  • Download rankings, all-time:
    • Site-wide: 22,148 out of 57,915
    • In genetics: 1,484 out of 3,319
  • Year to date:
    • Site-wide: 56,078 out of 57,915
  • Since beginning of last month:
    • Site-wide: 50,911 out of 57,915

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