Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,747 bioRxiv papers from 278,434 authors.

Author: Matthew Stephens

Rankings

  • All-time downloads: 46,475 (rank: 297 out of 278,434)
  • Categories:
    • bioinformatics: 9,877 (rank: 301 out of 24,395)
    • evolutionary biology: 1,314 (rank: 2,151 (tie) out of 15,246)
    • genetics: 20,279 (rank: 279 out of 27,725)
    • genomics: 15,005 (rank: 439 out of 31,945)

Downloads per author, site-wide

Preprints

Cell type specific genetic regulation of gene expression across human tissues

genomics more details view paper

No bioRxiv download data for this paper yet.

Variational Inference of Population Structure in Large SNP Datasets

genetics more details view paper
  • Downloaded 5,967 times
  • Download rankings, all-time:
    • Site-wide: 297 out of 62,747
    • In genetics: 36 out of 3,562
  • Year to date:
    • Site-wide: 7,190 out of 62,747
  • Since beginning of last month:
    • Site-wide: 7,135 out of 62,747

Visualizing the Structure of RNA-seq Expression Data using Grade of Membership Models

genetics more details view paper
  • Downloaded 3,186 times
  • Download rankings, all-time:
    • Site-wide: 961 out of 62,747
    • In genetics: 89 out of 3,562
  • Year to date:
    • Site-wide: 23,585 out of 62,747
  • Since beginning of last month:
    • Site-wide: 25,288 out of 62,747

Bayesian large-scale multiple regression with summary statistics from genome-wide association studies

genetics more details view paper
  • Downloaded 2,847 times
  • Download rankings, all-time:
    • Site-wide: 1,204 out of 62,747
    • In genetics: 114 out of 3,562
  • Year to date:
    • Site-wide: 26,392 out of 62,747
  • Since beginning of last month:
    • Site-wide: 42,981 out of 62,747

False Discovery Rates: A New Deal.

bioinformatics more details view paper
  • Downloaded 2,836 times
  • Download rankings, all-time:
    • Site-wide: 1,214 out of 62,747
    • In bioinformatics: 247 out of 6,251
  • Year to date:
    • Site-wide: 29,358 out of 62,747
  • Since beginning of last month:
    • Site-wide: 38,527 out of 62,747

Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis

genomics more details view paper
  • Downloaded 2,619 times
  • Download rankings, all-time:
    • Site-wide: 1,372 out of 62,747
    • In genomics: 316 out of 4,316
  • Year to date:
    • Site-wide: 232 out of 62,747
  • Since beginning of last month:
    • Site-wide: 443 out of 62,747

Visualizing spatial population structure with estimated effective migration surfaces

genetics more details view paper
  • Downloaded 2,508 times
  • Download rankings, all-time:
    • Site-wide: 1,481 out of 62,747
    • In genetics: 143 out of 3,562
  • Year to date:
    • Site-wide: 32,042 out of 62,747
  • Since beginning of last month:
    • Site-wide: 21,553 out of 62,747

Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling

genomics more details view paper
  • Downloaded 2,446 times
  • Download rankings, all-time:
    • Site-wide: 1,559 out of 62,747
    • In genomics: 351 out of 4,316
  • Year to date:
    • Site-wide: 49,328 out of 62,747
  • Since beginning of last month:
    • Site-wide: 34,624 out of 62,747

Flexible statistical methods for estimating and testing effects in genomic studies with multiple conditions

genomics more details view paper
  • Downloaded 2,298 times
  • Download rankings, all-time:
    • Site-wide: 1,742 out of 62,747
    • In genomics: 387 out of 4,316
  • Year to date:
    • Site-wide: 10,667 out of 62,747
  • Since beginning of last month:
    • Site-wide: 14,464 out of 62,747

The GTEx Consortium atlas of genetic regulatory effects across human tissues

genetics more details view paper
  • Downloaded 2,250 times
  • Download rankings, all-time:
    • Site-wide: 1,799 out of 62,747
    • In genetics: 171 out of 3,562
  • Year to date:
    • Site-wide: 313 out of 62,747
  • Since beginning of last month:
    • Site-wide: 12 out of 62,747

A simple new approach to variable selection in regression, with application to genetic fine-mapping

bioinformatics more details view paper
  • Downloaded 2,182 times
  • Download rankings, all-time:
    • Site-wide: 1,903 out of 62,747
    • In bioinformatics: 391 out of 6,251
  • Year to date:
    • Site-wide: 492 out of 62,747
  • Since beginning of last month:
    • Site-wide: 970 out of 62,747

A large-scale genome-wide enrichment analysis identifies new trait-associated genes, pathways and tissues across 31 human phenotypes

genomics more details view paper
  • Downloaded 2,167 times
  • Download rankings, all-time:
    • Site-wide: 1,934 out of 62,747
    • In genomics: 422 out of 4,316
  • Year to date:
    • Site-wide: 19,161 out of 62,747
  • Since beginning of last month:
    • Site-wide: 34,713 out of 62,747

A simple model-based approach to inferring and visualizing cancer mutation signatures

bioinformatics more details view paper
  • Downloaded 1,822 times
  • Download rankings, all-time:
    • Site-wide: 2,626 out of 62,747
    • In bioinformatics: 530 out of 6,251
  • Year to date:
    • Site-wide: 49,604 out of 62,747
  • Since beginning of last month:
    • Site-wide: 60,149 out of 62,747

Estimating time to the common ancestor for a beneficial allele

evolutionary biology more details view paper
  • Downloaded 1,314 times
  • Download rankings, all-time:
    • Site-wide: 4,525 out of 62,747
    • In evolutionary biology: 244 out of 4,228
  • Year to date:
    • Site-wide: 47,959 out of 62,747
  • Since beginning of last month:
    • Site-wide: 45,168 out of 62,747

A new sequence logo plot to highlight enrichment and depletion

genetics more details view paper
  • Downloaded 1,198 times
  • Download rankings, all-time:
    • Site-wide: 5,256 out of 62,747
    • In genetics: 427 out of 3,562
  • Year to date:
    • Site-wide: 24,186 out of 62,747
  • Since beginning of last month:
    • Site-wide: 26,221 out of 62,747

msCentipede: Modeling heterogeneity across genomic sites improves accuracy in the inference of transcription factor binding

genomics more details view paper
  • Downloaded 1,083 times
  • Download rankings, all-time:
    • Site-wide: 6,240 out of 62,747
    • In genomics: 1,032 out of 4,316
  • Year to date:
    • Site-wide: 60,640 out of 62,747
  • Since beginning of last month:
    • Site-wide: 60,201 out of 62,747

Mendelian randomization accounting for correlated and uncorrelated pleiotropic effects using genome-wide summary statistics.

genetics more details view paper
  • Downloaded 1,019 times
  • Download rankings, all-time:
    • Site-wide: 6,879 out of 62,747
    • In genetics: 547 out of 3,562
  • Year to date:
    • Site-wide: 1,426 out of 62,747
  • Since beginning of last month:
    • Site-wide: 2,201 out of 62,747

Bayesian multivariate reanalysis of large genetic studies identifies many new associations

genomics more details view paper
  • Downloaded 986 times
  • Download rankings, all-time:
    • Site-wide: 7,245 out of 62,747
    • In genomics: 1,153 out of 4,316
  • Year to date:
    • Site-wide: 1,508 out of 62,747
  • Since beginning of last month:
    • Site-wide: 2,624 out of 62,747

Inference and visualization of DNA damage patterns using a grade of membership model

bioinformatics more details view paper
  • Downloaded 916 times
  • Download rankings, all-time:
    • Site-wide: 8,171 out of 62,747
    • In bioinformatics: 1,440 out of 6,251
  • Year to date:
    • Site-wide: 33,282 out of 62,747
  • Since beginning of last month:
    • Site-wide: 41,670 out of 62,747

CorShrink : Empirical Bayes shrinkage estimation of correlations, with applications

genetics more details view paper
  • Downloaded 887 times
  • Download rankings, all-time:
    • Site-wide: 8,590 out of 62,747
    • In genetics: 643 out of 3,562
  • Year to date:
    • Site-wide: 10,340 out of 62,747
  • Since beginning of last month:
    • Site-wide: 8,932 out of 62,747

Model-based analysis of positive selection significantly expands the list of cancer driver genes, including RNA methyltransferases

genomics more details view paper
  • Downloaded 799 times
  • Download rankings, all-time:
    • Site-wide: 10,076 out of 62,747
    • In genomics: 1,476 out of 4,316
  • Year to date:
    • Site-wide: 12,038 out of 62,747
  • Since beginning of last month:
    • Site-wide: 24,603 out of 62,747

Estimating recent migration and population size surfaces

bioinformatics more details view paper
  • Downloaded 779 times
  • Download rankings, all-time:
    • Site-wide: 10,431 out of 62,747
    • In bioinformatics: 1,807 out of 6,251
  • Year to date:
    • Site-wide: 37,502 out of 62,747
  • Since beginning of last month:
    • Site-wide: 48,297 out of 62,747

Discovery and characterization of variance QTLs in human induced pluripotent stem cells

genomics more details view paper
  • Downloaded 743 times
  • Download rankings, all-time:
    • Site-wide: 11,185 out of 62,747
    • In genomics: 1,596 out of 4,316
  • Year to date:
    • Site-wide: 11,905 out of 62,747
  • Since beginning of last month:
    • Site-wide: 29,294 out of 62,747

Genotyping Polyploids from Messy Sequencing Data

bioinformatics more details view paper
  • Downloaded 722 times
  • Download rankings, all-time:
    • Site-wide: 11,662 out of 62,747
    • In bioinformatics: 1,950 out of 6,251
  • Year to date:
    • Site-wide: 20,552 out of 62,747
  • Since beginning of last month:
    • Site-wide: 30,693 out of 62,747

Silencing Of Transposable Elements May Not Be A Major Driver Of Regulatory Evolution In Primate Induced Pluripotent Stem Cells

genomics more details view paper
  • Downloaded 663 times
  • Download rankings, all-time:
    • Site-wide: 13,176 out of 62,747
    • In genomics: 1,781 out of 4,316
  • Year to date:
    • Site-wide: 53,601 out of 62,747
  • Since beginning of last month:
    • Site-wide: 51,513 out of 62,747

Epigenetic Modifications are Associated with Inter-species Gene Expression Variation in Primates

genomics more details view paper
  • Downloaded 631 times
  • Download rankings, all-time:
    • Site-wide: 14,100 out of 62,747
    • In genomics: 1,856 out of 4,316
  • Year to date:
    • Site-wide: 56,772 out of 62,747
  • Since beginning of last month:
    • Site-wide: 60,040 out of 62,747

Variance Adaptive Shrinkage (vash): Flexible Empirical Bayes estimation of variances

bioinformatics more details view paper
  • Downloaded 620 times
  • Download rankings, all-time:
    • Site-wide: 14,445 out of 62,747
    • In bioinformatics: 2,305 out of 6,251
  • Year to date:
    • Site-wide: 57,369 out of 62,747
  • Since beginning of last month:
    • Site-wide: 56,660 out of 62,747

The Genetic Architecture of Gene Expression Levels in Wild Baboons

genomics more details view paper
  • Downloaded 570 times
  • Download rankings, all-time:
    • Site-wide: 16,211 out of 62,747
    • In genomics: 2,037 out of 4,316
  • Year to date:
    • Site-wide: 58,712 out of 62,747
  • Since beginning of last month:
    • Site-wide: 55,997 out of 62,747

A multivariate genome-wide association analysis of 10 LDL subfractions, and their response to statin treatment, in 1868 Caucasians

genetics more details view paper
  • Downloaded 417 times
  • Download rankings, all-time:
    • Site-wide: 23,722 out of 62,747
    • In genetics: 1,565 out of 3,562
  • Year to date:
    • Site-wide: 60,588 out of 62,747
  • Since beginning of last month:
    • Site-wide: 57,783 out of 62,747

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News