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Author: Nick Goldman

Rankings

  • All-time downloads: 12,346 (rank: 20,429 )
  • Categories:
    • bioinformatics: 1,480 (rank: 12,275 (tie) )
    • epidemiology: 2,256 (rank: 6,458 (tie) )
    • evolutionary biology: 4,196 (rank: 986 )
    • genomics: 2,683 (rank: 10,253 (tie) )
    • molecular biology: 1,252 (rank: 5,743 (tie) )
    • pharmacology and toxicology: 479 (rank: 4,057 (tie) )

Downloads per author, site-wide

Preprints

Genomic reconstruction of the SARS-CoV-2 epidemic in England

epidemiology more details view paper
  • Downloaded 2,256 times
  • Download rankings, all-time:
    • Site-wide: 8,325
    • In epidemiology: 677
  • Year to date:
    • Site-wide: 1,658
  • Since beginning of last month:
    • Site-wide: 3,211

BOSS-RUNS: a flexible and practical dynamic read sampling framework for nanopore sequencing

genomics more details view paper
  • Downloaded 1,460 times
  • Download rankings, all-time:
    • Site-wide: 16,040
    • In genomics: 1,557
  • Year to date:
    • Site-wide: 19,262
  • Since beginning of last month:
    • Site-wide: 18,431

PASP - a whole-transcriptome poly(A) tail length determination assay for the Illumina platform

molecular biology more details view paper
  • Downloaded 1,252 times
  • Download rankings, all-time:
    • Site-wide: 20,224
    • In molecular biology: 540
  • Year to date:
    • Site-wide: 85,460
  • Since beginning of last month:
    • Site-wide: 87,466

Short template switch events explain mutation clusters in the human genome

genomics more details view paper
  • Downloaded 1,223 times
  • Download rankings, all-time:
    • Site-wide: 20,972
    • In genomics: 1,959
  • Year to date:
    • Site-wide: 111,902
  • Since beginning of last month:
    • Site-wide: 122,912

Avoiding ascertainment bias in the maximum likelihood inference of phylogenies based on truncated data

evolutionary biology more details view paper
  • Downloaded 1,106 times
  • Download rankings, all-time:
    • Site-wide: 24,459
    • In evolutionary biology: 954
  • Year to date:
    • Site-wide: 40,414
  • Since beginning of last month:
    • Site-wide: 46,747

Mutation rates and selection on synonymous mutations in SARS-CoV-2

evolutionary biology more details view paper
  • Downloaded 1,062 times
  • Download rankings, all-time:
    • Site-wide: 26,028
    • In evolutionary biology: 1,040
  • Year to date:
    • Site-wide: 4,844
  • Since beginning of last month:
    • Site-wide: 22,226

Modelling structural constraints on protein evolution via side-chain conformational states

evolutionary biology more details view paper
  • Downloaded 642 times
  • Download rankings, all-time:
    • Site-wide: 53,467
    • In evolutionary biology: 2,576
  • Year to date:
    • Site-wide: 157,187
  • Since beginning of last month:
    • Site-wide: 151,116

Sampling bias and model choice in continuous phylogeography: getting lost on a random walk

evolutionary biology more details view paper
  • Downloaded 536 times
  • Download rankings, all-time:
    • Site-wide: 67,108
    • In evolutionary biology: 3,336
  • Year to date:
    • Site-wide: 127,051
  • Since beginning of last month:
    • Site-wide: 156,615

Integrated evolutionary and structural analysis reveals xenobiotics and pathogens as the major drivers of mammalian adaptation

evolutionary biology more details view paper
  • Downloaded 524 times
  • Download rankings, all-time:
    • Site-wide: 68,895
    • In evolutionary biology: 3,448
  • Year to date:
    • Site-wide: 131,324
  • Since beginning of last month:
    • Site-wide: 120,598

The SARS-CoV-2 replication-transcription complex is a priority target for broad-spectrum pan-coronavirus drugs

pharmacology and toxicology more details view paper
  • Downloaded 479 times
  • Download rankings, all-time:
    • Site-wide: 76,508
    • In pharmacology and toxicology: 498
  • Year to date:
    • Site-wide: 16,843
  • Since beginning of last month:
    • Site-wide: 62,438

phastSim: efficient simulation of sequence evolution for pandemic-scale datasets

bioinformatics more details view paper
  • Downloaded 445 times
  • Download rankings, all-time:
    • Site-wide: 82,590
    • In bioinformatics: 7,439
  • Year to date:
    • Site-wide: 18,797
  • Since beginning of last month:
    • Site-wide: 32,273

A daily-updated database and tools for comprehensive SARS-CoV-2 mutation-annotated trees

bioinformatics more details view paper
  • Downloaded 432 times
  • Download rankings, all-time:
    • Site-wide: 85,319
    • In bioinformatics: 7,653
  • Year to date:
    • Site-wide: 19,698
  • Since beginning of last month:
    • Site-wide: 59,529

Phylogenetic Novelty Scores: a New Approach for Weighting Genetic Sequences

bioinformatics more details view paper
  • Downloaded 368 times
  • Download rankings, all-time:
    • Site-wide: 99,233
    • In bioinformatics: 8,528
  • Year to date:
    • Site-wide: 75,146
  • Since beginning of last month:
    • Site-wide: 90,822

Ambiguity coding allows accurate inference of evolutionary parameters from alignments in an aggregated state-space

evolutionary biology more details view paper
  • Downloaded 326 times
  • Download rankings, all-time:
    • Site-wide: 109,340
    • In evolutionary biology: 5,440
  • Year to date:
    • Site-wide: 159,541
  • Since beginning of last month:
    • Site-wide: 156,166

Short-range template switching in great ape genomes explored using a pair hidden Markov model

bioinformatics more details view paper
  • Downloaded 235 times
  • Download rankings, all-time:
    • Site-wide: 133,164
    • In bioinformatics: 10,499
  • Year to date:
    • Site-wide: 99,867
  • Since beginning of last month:
    • Site-wide: 90,720

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