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Author: Qin Ma

Rankings

  • All-time downloads: 17,998 (rank: 10,229 (tie) )
  • Categories:
    • bioinformatics: 13,449 (rank: 489 )
    • cancer biology: 157 (rank: 32,915 (tie) )
    • evolutionary biology: 524 (rank: 13,256 (tie) )
    • genetics: 685 (rank: 21,033 (tie) )
    • genomics: 405 (rank: 38,849 (tie) )
    • microbiology: 1,148 (rank: 12,546 (tie) )
    • molecular biology: 131 (rank: 25,934 (tie) )
    • plant biology: 1,071 (rank: 3,587 (tie) )
    • systems biology: 428 (rank: 9,400 (tie) )

Downloads per author, site-wide

Preprints

ViDGER: An R package for integrative interpretation of differential gene expression results of RNA-seq data

bioinformatics more details view paper
  • Downloaded 2,518 times
  • Download rankings, all-time:
    • Site-wide: 5,555
    • In bioinformatics: 609
  • Year to date:
    • Site-wide: 22,476
  • Since beginning of last month:
    • Site-wide: 52,802

scGNN: a novel graph neural network framework for single-cell RNA-Seq analyses

bioinformatics more details view paper
  • Downloaded 1,449 times
  • Download rankings, all-time:
    • Site-wide: 12,548
    • In bioinformatics: 1,509
  • Year to date:
    • Site-wide: 5,157
  • Since beginning of last month:
    • Site-wide: 20,589

Gene-centric intra- and inter-clade recombination in a context of Escherichia coli subpopulations

microbiology more details view paper
  • Downloaded 1,148 times
  • Download rankings, all-time:
    • Site-wide: 17,822
    • In microbiology: 1,015
  • Year to date:
    • Site-wide: 63,930
  • Since beginning of last month:
    • Site-wide: 53,103

IRIS-EDA: An integrated RNA-Seq interpretation system for gene expression data analysis

bioinformatics more details view paper
  • Downloaded 1,106 times
  • Download rankings, all-time:
    • Site-wide: 18,858
    • In bioinformatics: 2,241
  • Year to date:
    • Site-wide: 54,820
  • Since beginning of last month:
    • Site-wide: 61,220

QUBIC2: A novel biclustering algorithm for large-scale bulk RNA-sequencing and single-cell RNA-sequencing data analysis

bioinformatics more details view paper
  • Downloaded 924 times
  • Download rankings, all-time:
    • Site-wide: 24,554
    • In bioinformatics: 2,871
  • Year to date:
    • Site-wide: 75,516
  • Since beginning of last month:
    • Site-wide: 69,148

Systematic Prediction of Regulatory Motifs from Human ChIP-Sequencing Data Based on a Deep Learning Framework

bioinformatics more details view paper
  • Downloaded 852 times
  • Download rankings, all-time:
    • Site-wide: 27,460
    • In bioinformatics: 3,173
  • Year to date:
    • Site-wide: 87,672
  • Since beginning of last month:
    • Site-wide: 112,424

A graph neural network model to estimate cell-wise metabolic flux using single cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 810 times
  • Download rankings, all-time:
    • Site-wide: 29,502
    • In bioinformatics: 3,352
  • Year to date:
    • Site-wide: 4,145
  • Since beginning of last month:
    • Site-wide: 2,702

GeneQC: A quality control tool for gene expression estimation based on RNA-sequencing reads mapping

bioinformatics more details view paper
  • Downloaded 726 times
  • Download rankings, all-time:
    • Site-wide: 34,344
    • In bioinformatics: 3,819
  • Year to date:
    • Site-wide: 82,628
  • Since beginning of last month:
    • Site-wide: 101,758

Identification of methylation and hydroxymethylation haplotype blocks as distal regulatory elements aids in deconvolution of heterogeneous brain tissues

genetics more details view paper
  • Downloaded 685 times
  • Download rankings, all-time:
    • Site-wide: 37,180
    • In genetics: 1,751
  • Year to date:
    • Site-wide: 103,727
  • Since beginning of last month:
    • Site-wide: 112,874

scREAD: A single-cell RNA-Seq database for Alzheimer's Disease

bioinformatics more details view paper
  • Downloaded 666 times
  • Download rankings, all-time:
    • Site-wide: 38,586
    • In bioinformatics: 4,218
  • Year to date:
    • Site-wide: 30,780
  • Since beginning of last month:
    • Site-wide: 29,650

LTMG: A novel statistical modeling of transcriptional expression states in single-cell RNA-Seq data

bioinformatics more details view paper
  • Downloaded 584 times
  • Download rankings, all-time:
    • Site-wide: 45,526
    • In bioinformatics: 4,785
  • Year to date:
    • Site-wide: 73,462
  • Since beginning of last month:
    • Site-wide: 45,836

Prediction of protein-protein interactions based on elastic net and deep forest

bioinformatics more details view paper
  • Downloaded 552 times
  • Download rankings, all-time:
    • Site-wide: 48,830
    • In bioinformatics: 5,073
  • Year to date:
    • Site-wide: 22,780
  • Since beginning of last month:
    • Site-wide: 27,695

Genetic load and mutational meltdown in cancer cell populations

evolutionary biology more details view paper
  • Downloaded 524 times
  • Download rankings, all-time:
    • Site-wide: 51,880
    • In evolutionary biology: 2,775
  • Year to date:
    • Site-wide: 95,676
  • Since beginning of last month:
    • Site-wide: 74,841

Rootstock effects on scion phenotypes in a 'Chambourcin' experimental vineyard

plant biology more details view paper
  • Downloaded 515 times
  • Download rankings, all-time:
    • Site-wide: 53,051
    • In plant biology: 1,270
  • Year to date:
    • Site-wide: 121,352
  • Since beginning of last month:
    • Site-wide: 102,608

A probabilistic model-based bi-clustering method for single-cell transcriptomic data analysis

bioinformatics more details view paper
  • Downloaded 467 times
  • Download rankings, all-time:
    • Site-wide: 59,103
    • In bioinformatics: 5,919
  • Year to date:
    • Site-wide: 133,938
  • Since beginning of last month:
    • Site-wide: 137,197

RECTA: Regulon Identification Based on Comparative Genomics and Transcriptomics Analysis

systems biology more details view paper
  • Downloaded 428 times
  • Download rankings, all-time:
    • Site-wide: 64,771
    • In systems biology: 1,543
  • Year to date:
    • Site-wide: 110,926
  • Since beginning of last month:
    • Site-wide: 121,317

Free-living human cells reconfigure their chromosomes in the evolution back to uni-cellularity

genomics more details view paper
  • Downloaded 405 times
  • Download rankings, all-time:
    • Site-wide: 68,609
    • In genomics: 4,797
  • Year to date:
    • Site-wide: 129,199
  • Since beginning of last month:
    • Site-wide: 128,026

Gene regulatory networks associated with lateral root and nodule development in soybean

plant biology more details view paper
  • Downloaded 374 times
  • Download rankings, all-time:
    • Site-wide: 73,896
    • In plant biology: 1,931
  • Year to date:
    • Site-wide: 53,210
  • Since beginning of last month:
    • Site-wide: 93,755

Bi-clustering based biological and clinical characterization of colorectal cancer in complementary to CMS classification

bioinformatics more details view paper
  • Downloaded 337 times
  • Download rankings, all-time:
    • Site-wide: 80,849
    • In bioinformatics: 7,391
  • Year to date:
    • Site-wide: 124,643
  • Since beginning of last month:
    • Site-wide: 133,827

Inductive Inference of Gene Regulatory Network Using Supervised and Semi-supervised Graph Neural Networks

bioinformatics more details view paper
  • Downloaded 299 times
  • Download rankings, all-time:
    • Site-wide: 88,623
    • In bioinformatics: 7,875
  • Year to date:
    • Site-wide: 43,876
  • Since beginning of last month:
    • Site-wide: 55,517

Analysis of next- and third-generation RNA-Seq data reveals the structures of alternative transcription units in bacterial genomes

bioinformatics more details view paper
  • Downloaded 296 times
  • Download rankings, all-time:
    • Site-wide: 89,248
    • In bioinformatics: 7,913
  • Year to date:
    • Site-wide: 9,261
  • Since beginning of last month:
    • Site-wide: 32,297

rSeqTU — a machine-learning based R package for prediction of bacterial transcription units

bioinformatics more details view paper
  • Downloaded 279 times
  • Download rankings, all-time:
    • Site-wide: 93,023
    • In bioinformatics: 8,161
  • Year to date:
    • Site-wide: 138,904
  • Since beginning of last month:
    • Site-wide: 126,691

MiREDiBase: a manually curated database of validated and putative editing events in microRNAs

bioinformatics more details view paper
  • Downloaded 267 times
  • Download rankings, all-time:
    • Site-wide: 95,566
    • In bioinformatics: 8,330
  • Year to date:
    • Site-wide: 34,597
  • Since beginning of last month:
    • Site-wide: 47,434

Assessing deep learning algorithms in cis-regulatory motif finding based on genomic sequencing data

bioinformatics more details view paper
  • Downloaded 252 times
  • Download rankings, all-time:
    • Site-wide: 98,852
    • In bioinformatics: 8,544
  • Year to date:
    • Site-wide: 41,448
  • Since beginning of last month:
    • Site-wide: 48,293

Prediction of Protein-Protein Interactions Based on L1-Regularized Logistic Regression and Gradient Tree Boosting

bioinformatics more details view paper
  • Downloaded 225 times
  • Download rankings, all-time:
    • Site-wide: 105,150
    • In bioinformatics: 8,913
  • Year to date:
    • Site-wide: 96,389
  • Since beginning of last month:
    • Site-wide: 77,856

Causal inference for the effect of environmental chemicals on chronic kidney disease

bioinformatics more details view paper
  • Downloaded 198 times
  • Download rankings, all-time:
    • Site-wide: 111,353
    • In bioinformatics: 9,270
  • Year to date:
    • Site-wide: 102,796
  • Since beginning of last month:
    • Site-wide: 109,545

IRIS-FGM: an integrative single-cell RNA-Seq interpretation system for functional gene module analysis

bioinformatics more details view paper
  • Downloaded 191 times
  • Download rankings, all-time:
    • Site-wide: 112,979
    • In bioinformatics: 9,362
  • Year to date:
    • Site-wide: 50,796
  • Since beginning of last month:
    • Site-wide: 59,338

Root system influence on high dimensional leaf phenotypes over the grapevine growing season

plant biology more details view paper
  • Downloaded 182 times
  • Download rankings, all-time:
    • Site-wide: 114,920
    • In plant biology: 3,195
  • Year to date:
    • Site-wide: 57,851
  • Since beginning of last month:
    • Site-wide: 79,201

DMLDA-LocLIFT: Identification of multi-label protein subcellular localization using DMLDA dimensionality reduction and LIFT classifier

bioinformatics more details view paper
  • Downloaded 158 times
  • Download rankings, all-time:
    • Site-wide: 120,326
    • In bioinformatics: 9,758
  • Year to date:
    • Site-wide: 109,360
  • Since beginning of last month:
    • Site-wide: 95,187

Inhibition of polo-like kinase 1 (PLK1) facilitates reactivation of gamma-herpesviruses in B-cell lymphomas and their elimination

cancer biology more details view paper
  • Downloaded 157 times
  • Download rankings, all-time:
    • Site-wide: 120,511
    • In cancer biology: 3,693
  • Year to date:
    • Site-wide: 36,255
  • Since beginning of last month:
    • Site-wide: 53,335

MpsLDA-ProSVM: predicting multi-label protein subcellular localization by wMLDAe dimensionality reduction and ProSVM classifier

bioinformatics more details view paper
  • Downloaded 151 times
  • Download rankings, all-time:
    • Site-wide: 121,782
    • In bioinformatics: 9,842
  • Year to date:
    • Site-wide: 102,774
  • Since beginning of last month:
    • Site-wide: 77,969

StackRAM: a cross-species method for identifying RNA N6-methyladenosine sites based on stacked ensemble

bioinformatics more details view paper
  • Downloaded 142 times
  • Download rankings, all-time:
    • Site-wide: 123,559
    • In bioinformatics: 9,937
  • Year to date:
    • Site-wide: 129,809
  • Since beginning of last month:
    • Site-wide: 107,499

FACT subunit SUPT16H associates with BRD4 and contributes to silencing of antiviral interferon signaling

molecular biology more details view paper
  • Downloaded 131 times
  • Download rankings, all-time:
    • Site-wide: 125,880
    • In molecular biology: 3,762
  • Year to date:
    • Site-wide: 26,741
  • Since beginning of last month:
    • Site-wide: 5,279

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