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Author: Roland Eils

Rankings

  • All-time downloads: 46,535 (rank: 736 out of 365,224)
  • Categories:
    • bioinformatics: 5,599 (rank: 1,441 out of 31,516)
    • cancer biology: 4,212 (rank: 471 out of 24,792)
    • cell biology: 12,567 (rank: 165 out of 26,921)
    • genomics: 21,360 (rank: 382 out of 39,329)
    • immunology: 546 (rank: 6,969 (tie) out of 19,063)
    • synthetic biology: 1,922 (rank: 493 (tie) out of 3,717)
    • systems biology: 329 (rank: 7,752 (tie) out of 10,847)

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Preprints

The Human Cell Atlas

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    • In cell biology: 3 out of 4,311
  • Year to date:
    • Site-wide: 4,615 out of 84,910
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    • Site-wide: 4,142 out of 84,910

SARS-CoV-2 receptor ACE2 and TMPRSS2 are predominantly expressed in a transient secretory cell type in subsegmental bronchial branches

genomics more details view paper
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    • Site-wide: 1,004 out of 84,910
    • In genomics: 224 out of 5,475
  • Year to date:
    • Site-wide: 193 out of 84,910
  • Since beginning of last month:
    • Site-wide: 574 out of 84,910

Single nucleus and in situ RNA sequencing reveals cell topographies in the human pancreas

genomics more details view paper
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    • In genomics: 427 out of 5,475
  • Year to date:
    • Site-wide: 708 out of 84,910
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    • Site-wide: 315 out of 84,910

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

genomics more details view paper
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    • In genomics: 492 out of 5,475
  • Year to date:
    • Site-wide: 31,288 out of 84,910
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    • Site-wide: 26,676 out of 84,910

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,345 times
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    • In genomics: 513 out of 5,475
  • Year to date:
    • Site-wide: 77,646 out of 84,910
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    • Site-wide: 61,505 out of 84,910

Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments

genomics more details view paper
  • Downloaded 2,131 times
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    • In genomics: 588 out of 5,475
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    • Site-wide: 16,885 out of 84,910
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    • Site-wide: 12,999 out of 84,910

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

genomics more details view paper
  • Downloaded 2,064 times
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    • In genomics: 607 out of 5,475
  • Year to date:
    • Site-wide: 59,477 out of 84,910
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    • Site-wide: 54,243 out of 84,910

The landscape of viral associations in human cancers

cancer biology more details view paper
  • Downloaded 1,807 times
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    • In cancer biology: 99 out of 2,974
  • Year to date:
    • Site-wide: 8,898 out of 84,910
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    • Site-wide: 26,299 out of 84,910

pheno-seq - linking morphological features to gene expression in 3D cell culture systems

genomics more details view paper
  • Downloaded 1,657 times
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    • Site-wide: 4,676 out of 84,910
    • In genomics: 797 out of 5,475
  • Year to date:
    • Site-wide: 21,597 out of 84,910
  • Since beginning of last month:
    • Site-wide: 17,866 out of 84,910

Deciphering programs of transcriptional regulation by combined deconvolution of multiple omics layers

genomics more details view paper
  • Downloaded 1,480 times
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    • Site-wide: 5,656 out of 84,910
    • In genomics: 937 out of 5,475
  • Year to date:
    • Site-wide: 14,849 out of 84,910
  • Since beginning of last month:
    • Site-wide: 7,773 out of 84,910

Modeling glioblastoma invasion using human brain organoids and single-cell transcriptomics

cancer biology more details view paper
  • Downloaded 1,385 times
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    • Site-wide: 6,304 out of 84,910
    • In cancer biology: 167 out of 2,974
  • Year to date:
    • Site-wide: 5,743 out of 84,910
  • Since beginning of last month:
    • Site-wide: 7,815 out of 84,910

Genomic footprints of activated telomere maintenance mechanisms in cancer

genomics more details view paper
  • Downloaded 1,345 times
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    • Site-wide: 6,646 out of 84,910
    • In genomics: 1,057 out of 5,475
  • Year to date:
    • Site-wide: 16,025 out of 84,910
  • Since beginning of last month:
    • Site-wide: 38,840 out of 84,910

Segmentation-free inference of cell-types from in situ transcriptomics data

bioinformatics more details view paper
  • Downloaded 1,340 times
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    • Site-wide: 6,680 out of 84,910
    • In bioinformatics: 1,194 out of 8,136
  • Year to date:
    • Site-wide: 3,736 out of 84,910
  • Since beginning of last month:
    • Site-wide: 5,651 out of 84,910

ACEseq - allele specific copy number estimation from whole genome sequencing

bioinformatics more details view paper
  • Downloaded 1,141 times
  • Download rankings, all-time:
    • Site-wide: 8,723 out of 84,910
    • In bioinformatics: 1,472 out of 8,136
  • Year to date:
    • Site-wide: 22,667 out of 84,910
  • Since beginning of last month:
    • Site-wide: 12,559 out of 84,910

Framework For Quality Assessment Of Whole Genome, Cancer Sequences

genomics more details view paper
  • Downloaded 989 times
  • Download rankings, all-time:
    • Site-wide: 11,011 out of 84,910
    • In genomics: 1,572 out of 5,475
  • Year to date:
    • Site-wide: 33,040 out of 84,910
  • Since beginning of last month:
    • Site-wide: 33,203 out of 84,910

Resolving Drug Effects In Patient-Derived Cancer Cells Links Organoid Responses To Genome Alterations

cancer biology more details view paper
  • Downloaded 879 times
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    • Site-wide: 13,244 out of 84,910
    • In cancer biology: 375 out of 2,974
  • Year to date:
    • Site-wide: 43,213 out of 84,910
  • Since beginning of last month:
    • Site-wide: 44,971 out of 84,910

Gene set inference from single-cell sequencing data using a hybrid of matrix factorization and variational autoencoders

bioinformatics more details view paper
  • Downloaded 793 times
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    • Site-wide: 15,467 out of 84,910
    • In bioinformatics: 2,402 out of 8,136
  • Year to date:
    • Site-wide: 13,477 out of 84,910
  • Since beginning of last month:
    • Site-wide: 18,626 out of 84,910

Cell-specific CRISPR/Cas9 activation by microRNA-dependent expression of anti-CRISPR proteins

synthetic biology more details view paper
  • Downloaded 786 times
  • Download rankings, all-time:
    • Site-wide: 15,701 out of 84,910
    • In synthetic biology: 258 out of 792
  • Year to date:
    • Site-wide: 43,844 out of 84,910
  • Since beginning of last month:
    • Site-wide: 51,523 out of 84,910

Web-based design and analysis tools for CRISPR base editing

bioinformatics more details view paper
  • Downloaded 777 times
  • Download rankings, all-time:
    • Site-wide: 15,976 out of 84,910
    • In bioinformatics: 2,463 out of 8,136
  • Year to date:
    • Site-wide: 52,221 out of 84,910
  • Since beginning of last month:
    • Site-wide: 39,198 out of 84,910

Identification and prioritisation of causal variants in human genetic disorders from exome or whole genome sequencing data

bioinformatics more details view paper
  • Downloaded 654 times
  • Download rankings, all-time:
    • Site-wide: 20,666 out of 84,910
    • In bioinformatics: 3,011 out of 8,136
  • Year to date:
    • Site-wide: 30,509 out of 84,910
  • Since beginning of last month:
    • Site-wide: 10,431 out of 84,910

Computational design of anti-CRISPR proteins with improved inhibition potency and expanded specificity

synthetic biology more details view paper
  • Downloaded 642 times
  • Download rankings, all-time:
    • Site-wide: 21,219 out of 84,910
    • In synthetic biology: 346 out of 792
  • Year to date:
    • Site-wide: 18,588 out of 84,910
  • Since beginning of last month:
    • Site-wide: 38,070 out of 84,910

Impact of cancer mutational signatures on transcription factor motifs in the human genome

bioinformatics more details view paper
  • Downloaded 574 times
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    • Site-wide: 24,887 out of 84,910
    • In bioinformatics: 3,453 out of 8,136
  • Year to date:
    • Site-wide: 57,096 out of 84,910
  • Since beginning of last month:
    • Site-wide: 73,353 out of 84,910

Single-fluorescent protein reporters allow parallel quantification of NK cell-mediated granzyme and caspase activities in single target cells

immunology more details view paper
  • Downloaded 546 times
  • Download rankings, all-time:
    • Site-wide: 26,459 out of 84,910
    • In immunology: 618 out of 2,384
  • Year to date:
    • Site-wide: 52,330 out of 84,910
  • Since beginning of last month:
    • Site-wide: 36,152 out of 84,910

Optogenetic control of Neisseria meningitidis Cas9 genome editing using an engineered, light-switchable anti-CRISPR protein

synthetic biology more details view paper
  • Downloaded 494 times
  • Download rankings, all-time:
    • Site-wide: 29,958 out of 84,910
    • In synthetic biology: 456 out of 792
  • Year to date:
    • Site-wide: 10,082 out of 84,910
  • Since beginning of last month:
    • Site-wide: 17,792 out of 84,910

Automated screening by 3D light-sheet microscopy with high spatial and temporal resolution reveals mitotic phenotypes

cell biology more details view paper
  • Downloaded 369 times
  • Download rankings, all-time:
    • Site-wide: 41,607 out of 84,910
    • In cell biology: 2,049 out of 4,311
  • Year to date:
    • Site-wide: 4,646 out of 84,910
  • Since beginning of last month:
    • Site-wide: 67,762 out of 84,910

Unraveling mitotic protein networks by 3D multiplexed epitope drug screening

systems biology more details view paper
  • Downloaded 329 times
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    • Site-wide: 46,359 out of 84,910
    • In systems biology: 1,376 out of 2,235
  • Year to date:
    • Site-wide: 55,481 out of 84,910
  • Since beginning of last month:
    • Site-wide: 48,348 out of 84,910

HTSlib-js: Developer toolkit for a client-side JavaScript interface for HTSlib

bioinformatics more details view paper
  • Downloaded 320 times
  • Download rankings, all-time:
    • Site-wide: 47,621 out of 84,910
    • In bioinformatics: 5,489 out of 8,136
  • Year to date:
    • Site-wide: 61,011 out of 84,910
  • Since beginning of last month:
    • Site-wide: 46,775 out of 84,910

Whole-genome fingerprint of the DNA methylome during chemically induced differentiation of the human AML cell line HL-60/S4

genomics more details view paper
  • Downloaded 237 times
  • Download rankings, all-time:
    • Site-wide: 59,745 out of 84,910
    • In genomics: 4,574 out of 5,475
  • Year to date:
    • Site-wide: 68,530 out of 84,910
  • Since beginning of last month:
    • Site-wide: 40,431 out of 84,910

Induced aneuploidy disrupts MCF10A acini formation and CCND1 expression

cancer biology more details view paper
  • Downloaded 141 times
  • Download rankings, all-time:
    • Site-wide: 75,156 out of 84,910
    • In cancer biology: 2,563 out of 2,974
  • Year to date:
    • Site-wide: 50,848 out of 84,910
  • Since beginning of last month:
    • Site-wide: 66,203 out of 84,910

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