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Author: Roland Eils

Rankings

  • All-time downloads: 60,235 (rank: 2,193 )
  • Categories:
    • bioinformatics: 7,614 (rank: 1,169 )
    • cancer biology: 5,643 (rank: 410 )
    • cell biology: 13,024 (rank: 184 )
    • genomics: 25,055 (rank: 355 )
    • immunology: 671 (rank: 12,229 (tie) )
    • infectious diseases: 5,583 (rank: 6,423 (tie) )
    • synthetic biology: 2,249 (rank: 601 (tie) )
    • systems biology: 396 (rank: 9,247 (tie) )

Downloads per author, site-wide

Preprints

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 12,560 times
  • Download rankings, all-time:
    • Site-wide: 550
    • In cell biology: 4
  • Year to date:
    • Site-wide: 18,657
  • Since beginning of last month:
    • Site-wide: 12,573

Cross-talk between the airway epithelium and activated immune cells defines severity in COVID-19

infectious diseases more details view paper
  • Downloaded 5,259 times
  • Download rankings, all-time:
    • Site-wide: 1,746
    • In infectious diseases: 418
  • Year to date:
    • Site-wide: 5,660
  • Since beginning of last month:
    • Site-wide: 4,443

SARS-CoV-2 receptor ACE2 and TMPRSS2 are predominantly expressed in a transient secretory cell type in subsegmental bronchial branches

genomics more details view paper
  • Downloaded 4,955 times
  • Download rankings, all-time:
    • Site-wide: 1,884
    • In genomics: 194
  • Year to date:
    • Site-wide: 13,250
  • Since beginning of last month:
    • Site-wide: 12,028

Single nucleus and in situ RNA sequencing reveals cell topographies in the human pancreas

genomics more details view paper
  • Downloaded 4,459 times
  • Download rankings, all-time:
    • Site-wide: 2,199
    • In genomics: 246
  • Year to date:
    • Site-wide: 5,349
  • Since beginning of last month:
    • Site-wide: None

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

genomics more details view paper
  • Downloaded 2,507 times
  • Download rankings, all-time:
    • Site-wide: 5,020
    • In genomics: 585
  • Year to date:
    • Site-wide: 97,700
  • Since beginning of last month:
    • Site-wide: 78,577

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,402 times
  • Download rankings, all-time:
    • Site-wide: 5,361
    • In genomics: 629
  • Year to date:
    • Site-wide: 79,913
  • Since beginning of last month:
    • Site-wide: 55,221

Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments

genomics more details view paper
  • Downloaded 2,322 times
  • Download rankings, all-time:
    • Site-wide: 5,635
    • In genomics: 660
  • Year to date:
    • Site-wide: 21,703
  • Since beginning of last month:
    • Site-wide: 18,929

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

genomics more details view paper
  • Downloaded 2,148 times
  • Download rankings, all-time:
    • Site-wide: 6,299
    • In genomics: 721
  • Year to date:
    • Site-wide: 85,377
  • Since beginning of last month:
    • Site-wide: 80,903

Cell segmentation-free inference of cell types from in situ transcriptomics data

bioinformatics more details view paper
  • Downloaded 2,066 times
  • Download rankings, all-time:
    • Site-wide: 6,660
    • In bioinformatics: 795
  • Year to date:
    • Site-wide: 4,316
  • Since beginning of last month:
    • Site-wide: 3,969

The landscape of viral associations in human cancers

cancer biology more details view paper
  • Downloaded 1,968 times
  • Download rankings, all-time:
    • Site-wide: 7,138
    • In cancer biology: 118
  • Year to date:
    • Site-wide: 62,664
  • Since beginning of last month:
    • Site-wide: None

pheno-seq - linking morphological features to gene expression in 3D cell culture systems

genomics more details view paper
  • Downloaded 1,812 times
  • Download rankings, all-time:
    • Site-wide: 8,094
    • In genomics: 907
  • Year to date:
    • Site-wide: 45,001
  • Since beginning of last month:
    • Site-wide: 37,943

Deciphering programs of transcriptional regulation by combined deconvolution of multiple omics layers

genomics more details view paper
  • Downloaded 1,644 times
  • Download rankings, all-time:
    • Site-wide: 9,408
    • In genomics: 1,053
  • Year to date:
    • Site-wide: 46,215
  • Since beginning of last month:
    • Site-wide: 30,335

Modeling glioblastoma invasion using human brain organoids and single-cell transcriptomics

cancer biology more details view paper
  • Downloaded 1,491 times
  • Download rankings, all-time:
    • Site-wide: 10,833
    • In cancer biology: 217
  • Year to date:
    • Site-wide: 73,598
  • Since beginning of last month:
    • Site-wide: 52,712

Genomic footprints of activated telomere maintenance mechanisms in cancer

genomics more details view paper
  • Downloaded 1,455 times
  • Download rankings, all-time:
    • Site-wide: 11,223
    • In genomics: 1,253
  • Year to date:
    • Site-wide: 85,574
  • Since beginning of last month:
    • Site-wide: 67,406

ACEseq - allele specific copy number estimation from whole genome sequencing

bioinformatics more details view paper
  • Downloaded 1,322 times
  • Download rankings, all-time:
    • Site-wide: 12,972
    • In bioinformatics: 1,601
  • Year to date:
    • Site-wide: 47,111
  • Since beginning of last month:
    • Site-wide: 46,442

Gene set inference from single-cell sequencing data using a hybrid of matrix factorization and variational autoencoders

bioinformatics more details view paper
  • Downloaded 1,127 times
  • Download rankings, all-time:
    • Site-wide: 16,542
    • In bioinformatics: 2,030
  • Year to date:
    • Site-wide: 12,125
  • Since beginning of last month:
    • Site-wide: 15,044

Framework For Quality Assessment Of Whole Genome, Cancer Sequences

genomics more details view paper
  • Downloaded 1,067 times
  • Download rankings, all-time:
    • Site-wide: 17,913
    • In genomics: 1,857
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

Resolving Drug Effects In Patient-Derived Cancer Cells Links Organoid Responses To Genome Alterations

cancer biology more details view paper
  • Downloaded 935 times
  • Download rankings, all-time:
    • Site-wide: 21,726
    • In cancer biology: 528
  • Year to date:
    • Site-wide: 120,671
  • Since beginning of last month:
    • Site-wide: None

Single-cell analysis of patient-derived PDAC organoids reveals cell state heterogeneity and a conserved developmental hierarchy

cancer biology more details view paper
  • Downloaded 896 times
  • Download rankings, all-time:
    • Site-wide: 23,137
    • In cancer biology: 572
  • Year to date:
    • Site-wide: 3,637
  • Since beginning of last month:
    • Site-wide: 3,671

Cell-specific CRISPR/Cas9 activation by microRNA-dependent expression of anti-CRISPR proteins

synthetic biology more details view paper
  • Downloaded 891 times
  • Download rankings, all-time:
    • Site-wide: 23,322
    • In synthetic biology: 298
  • Year to date:
    • Site-wide: 54,838
  • Since beginning of last month:
    • Site-wide: 43,733

Web-based design and analysis tools for CRISPR base editing

bioinformatics more details view paper
  • Downloaded 854 times
  • Download rankings, all-time:
    • Site-wide: 24,743
    • In bioinformatics: 2,951
  • Year to date:
    • Site-wide: 101,714
  • Since beginning of last month:
    • Site-wide: 64,830

Computational design of anti-CRISPR proteins with improved inhibition potency and expanded specificity

synthetic biology more details view paper
  • Downloaded 727 times
  • Download rankings, all-time:
    • Site-wide: 31,004
    • In synthetic biology: 398
  • Year to date:
    • Site-wide: 98,980
  • Since beginning of last month:
    • Site-wide: None

Identification and prioritisation of causal variants in human genetic disorders from exome or whole genome sequencing data

bioinformatics more details view paper
  • Downloaded 721 times
  • Download rankings, all-time:
    • Site-wide: 31,349
    • In bioinformatics: 3,561
  • Year to date:
    • Site-wide: 80,586
  • Since beginning of last month:
    • Site-wide: 66,417

Single-fluorescent protein reporters allow parallel quantification of NK cell-mediated granzyme and caspase activities in single target cells

immunology more details view paper
  • Downloaded 671 times
  • Download rankings, all-time:
    • Site-wide: 34,529
    • In immunology: 938
  • Year to date:
    • Site-wide: 49,365
  • Since beginning of last month:
    • Site-wide: 43,171

Optogenetic control of Neisseria meningitidis Cas9 genome editing using an engineered, light-switchable anti-CRISPR protein

synthetic biology more details view paper
  • Downloaded 631 times
  • Download rankings, all-time:
    • Site-wide: 37,431
    • In synthetic biology: 476
  • Year to date:
    • Site-wide: 48,498
  • Since beginning of last month:
    • Site-wide: 37,576

Impact of cancer mutational signatures on transcription factor motifs in the human genome

bioinformatics more details view paper
  • Downloaded 613 times
  • Download rankings, all-time:
    • Site-wide: 38,881
    • In bioinformatics: 4,278
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

The COVID-19 PHARMACOME: A method for the rational selection of drug repurposing candidates from multimodal knowledge harmonization

bioinformatics more details view paper
  • Downloaded 469 times
  • Download rankings, all-time:
    • Site-wide: 53,604
    • In bioinformatics: 5,512
  • Year to date:
    • Site-wide: 15,559
  • Since beginning of last month:
    • Site-wide: 13,076

Automated screening by 3D light-sheet microscopy with high spatial and temporal resolution reveals mitotic phenotypes

cell biology more details view paper
  • Downloaded 464 times
  • Download rankings, all-time:
    • Site-wide: 54,151
    • In cell biology: 2,376
  • Year to date:
    • Site-wide: 88,884
  • Since beginning of last month:
    • Site-wide: 51,719

Unraveling mitotic protein networks by 3D multiplexed epitope drug screening

systems biology more details view paper
  • Downloaded 396 times
  • Download rankings, all-time:
    • Site-wide: 63,826
    • In systems biology: 1,556
  • Year to date:
    • Site-wide: 110,059
  • Since beginning of last month:
    • Site-wide: 90,627

HTSlib-js: Developer toolkit for a client-side JavaScript interface for HTSlib

bioinformatics more details view paper
  • Downloaded 374 times
  • Download rankings, all-time:
    • Site-wide: 67,377
    • In bioinformatics: 6,511
  • Year to date:
    • Site-wide: 84,250
  • Since beginning of last month:
    • Site-wide: 54,527

Delayed viral clearance and exacerbated airway hyperinflammation in hypertensive COVID-19 patients

infectious diseases more details view paper
  • Downloaded 324 times
  • Download rankings, all-time:
    • Site-wide: 75,977
    • In infectious diseases: 3,053
  • Year to date:
    • Site-wide: 31,353
  • Since beginning of last month:
    • Site-wide: 32,093

Whole-genome fingerprint of the DNA methylome during chemically induced differentiation of the human AML cell line HL-60/S4

genomics more details view paper
  • Downloaded 284 times
  • Download rankings, all-time:
    • Site-wide: 84,037
    • In genomics: 5,411
  • Year to date:
    • Site-wide: 84,443
  • Since beginning of last month:
    • Site-wide: 78,205

Induced aneuploidy disrupts MCF10A acini formation and CCND1 expression

cancer biology more details view paper
  • Downloaded 198 times
  • Download rankings, all-time:
    • Site-wide: 102,559
    • In cancer biology: 3,145
  • Year to date:
    • Site-wide: 90,435
  • Since beginning of last month:
    • Site-wide: 62,160

The DNA methylation landscape of multiple myeloma shows extensive inter- and intrapatient heterogeneity that fuels transcriptomic variability

cancer biology more details view paper
  • Downloaded 155 times
  • Download rankings, all-time:
    • Site-wide: 111,267
    • In cancer biology: 3,443
  • Year to date:
    • Site-wide: 44,225
  • Since beginning of last month:
    • Site-wide: 31,788

Integrative Ranking Of Enhancer Networks Facilitates The Discovery Of Epigenetic Markers In Cancer

bioinformatics more details view paper
  • Downloaded 68 times
  • Download rankings, all-time:
    • Site-wide: 125,924
    • In bioinformatics: 10,023
  • Year to date:
    • Site-wide: 108,996
  • Since beginning of last month:
    • Site-wide: 86,757

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