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Author: Roland Eils

Rankings

  • All-time downloads: 63,278 (rank: 2,283 )
  • Categories:
    • bioinformatics: 8,286 (rank: 1,155 (tie) )
    • cancer biology: 6,567 (rank: 384 )
    • cell biology: 13,162 (rank: 214 )
    • genomics: 26,000 (rank: 407 )
    • immunology: 709 (rank: 14,349 (tie) )
    • infectious diseases: 5,815 (rank: 7,133 (tie) )
    • synthetic biology: 2,334 (rank: 627 (tie) )
    • systems biology: 405 (rank: 9,954 (tie) )

Downloads per author, site-wide

Preprints

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 12,681 times
  • Download rankings, all-time:
    • Site-wide: 625
    • In cell biology: 5
  • Year to date:
    • Site-wide: 20,841
  • Since beginning of last month:
    • Site-wide: 19,043

Cross-talk between the airway epithelium and activated immune cells defines severity in COVID-19

infectious diseases more details view paper
  • Downloaded 5,441 times
  • Download rankings, all-time:
    • Site-wide: 1,921
    • In infectious diseases: 469
  • Year to date:
    • Site-wide: 8,730
  • Since beginning of last month:
    • Site-wide: 20,250

SARS-CoV-2 receptor ACE2 and TMPRSS2 are predominantly expressed in a transient secretory cell type in subsegmental bronchial branches

genomics more details view paper
  • Downloaded 5,115 times
  • Download rankings, all-time:
    • Site-wide: 2,080
    • In genomics: 199
  • Year to date:
    • Site-wide: 14,453
  • Since beginning of last month:
    • Site-wide: 11,625

Single nucleus and in situ RNA sequencing reveals cell topographies in the human pancreas

genomics more details view paper
  • Downloaded 5,016 times
  • Download rankings, all-time:
    • Site-wide: 2,144
    • In genomics: 210
  • Year to date:
    • Site-wide: 3,042
  • Since beginning of last month:
    • Site-wide: 5,998

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

genomics more details view paper
  • Downloaded 2,525 times
  • Download rankings, all-time:
    • Site-wide: 5,746
    • In genomics: 629
  • Year to date:
    • Site-wide: 109,726
  • Since beginning of last month:
    • Site-wide: 114,009

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,414 times
  • Download rankings, all-time:
    • Site-wide: 6,141
    • In genomics: 674
  • Year to date:
    • Site-wide: 114,757
  • Since beginning of last month:
    • Site-wide: 141,043

Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments

genomics more details view paper
  • Downloaded 2,373 times
  • Download rankings, all-time:
    • Site-wide: 6,292
    • In genomics: 690
  • Year to date:
    • Site-wide: 38,671
  • Since beginning of last month:
    • Site-wide: 61,500

Cell segmentation-free inference of cell types from in situ transcriptomics data

bioinformatics more details view paper
  • Downloaded 2,356 times
  • Download rankings, all-time:
    • Site-wide: 6,364
    • In bioinformatics: 709
  • Year to date:
    • Site-wide: 5,333
  • Since beginning of last month:
    • Site-wide: 5,200

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

genomics more details view paper
  • Downloaded 2,175 times
  • Download rankings, all-time:
    • Site-wide: 7,148
    • In genomics: 770
  • Year to date:
    • Site-wide: 89,880
  • Since beginning of last month:
    • Site-wide: 124,437

The landscape of viral associations in human cancers

cancer biology more details view paper
  • Downloaded 2,022 times
  • Download rankings, all-time:
    • Site-wide: 7,921
    • In cancer biology: 130
  • Year to date:
    • Site-wide: 56,925
  • Since beginning of last month:
    • Site-wide: 63,664

pheno-seq - linking morphological features to gene expression in 3D cell culture systems

genomics more details view paper
  • Downloaded 1,843 times
  • Download rankings, all-time:
    • Site-wide: 9,117
    • In genomics: 966
  • Year to date:
    • Site-wide: 66,985
  • Since beginning of last month:
    • Site-wide: 78,369

Deciphering programs of transcriptional regulation by combined deconvolution of multiple omics layers

genomics more details view paper
  • Downloaded 1,683 times
  • Download rankings, all-time:
    • Site-wide: 10,436
    • In genomics: 1,110
  • Year to date:
    • Site-wide: 61,364
  • Since beginning of last month:
    • Site-wide: 43,212

Modeling glioblastoma invasion using human brain organoids and single-cell transcriptomics

cancer biology more details view paper
  • Downloaded 1,540 times
  • Download rankings, all-time:
    • Site-wide: 11,847
    • In cancer biology: 239
  • Year to date:
    • Site-wide: 63,327
  • Since beginning of last month:
    • Site-wide: 36,882

Single-cell analysis of patient-derived PDAC organoids reveals cell state heterogeneity and a conserved developmental hierarchy

cancer biology more details view paper
  • Downloaded 1,516 times
  • Download rankings, all-time:
    • Site-wide: 12,117
    • In cancer biology: 253
  • Year to date:
    • Site-wide: 2,499
  • Since beginning of last month:
    • Site-wide: 1,133

Genomic footprints of activated telomere maintenance mechanisms in cancer

genomics more details view paper
  • Downloaded 1,478 times
  • Download rankings, all-time:
    • Site-wide: 12,610
    • In genomics: 1,335
  • Year to date:
    • Site-wide: 95,932
  • Since beginning of last month:
    • Site-wide: 77,521

ACEseq - allele specific copy number estimation from whole genome sequencing

bioinformatics more details view paper
  • Downloaded 1,428 times
  • Download rankings, all-time:
    • Site-wide: 13,324
    • In bioinformatics: 1,581
  • Year to date:
    • Site-wide: 31,824
  • Since beginning of last month:
    • Site-wide: 23,327

Gene set inference from single-cell sequencing data using a hybrid of matrix factorization and variational autoencoders

bioinformatics more details view paper
  • Downloaded 1,195 times
  • Download rankings, all-time:
    • Site-wide: 17,386
    • In bioinformatics: 2,042
  • Year to date:
    • Site-wide: 24,453
  • Since beginning of last month:
    • Site-wide: 50,709

Framework For Quality Assessment Of Whole Genome, Cancer Sequences

genomics more details view paper
  • Downloaded 1,089 times
  • Download rankings, all-time:
    • Site-wide: 19,932
    • In genomics: 1,967
  • Year to date:
    • Site-wide: 124,340
  • Since beginning of last month:
    • Site-wide: 85,832

Resolving Drug Effects In Patient-Derived Cancer Cells Links Organoid Responses To Genome Alterations

cancer biology more details view paper
  • Downloaded 957 times
  • Download rankings, all-time:
    • Site-wide: 24,081
    • In cancer biology: 595
  • Year to date:
    • Site-wide: 114,933
  • Since beginning of last month:
    • Site-wide: 98,604

Cell-specific CRISPR/Cas9 activation by microRNA-dependent expression of anti-CRISPR proteins

synthetic biology more details view paper
  • Downloaded 922 times
  • Download rankings, all-time:
    • Site-wide: 25,409
    • In synthetic biology: 327
  • Year to date:
    • Site-wide: 72,914
  • Since beginning of last month:
    • Site-wide: 76,735

Web-based design and analysis tools for CRISPR base editing

bioinformatics more details view paper
  • Downloaded 873 times
  • Download rankings, all-time:
    • Site-wide: 27,442
    • In bioinformatics: 3,151
  • Year to date:
    • Site-wide: 109,748
  • Since beginning of last month:
    • Site-wide: 87,581

Computational design of anti-CRISPR proteins with improved inhibition potency and expanded specificity

synthetic biology more details view paper
  • Downloaded 753 times
  • Download rankings, all-time:
    • Site-wide: 33,695
    • In synthetic biology: 424
  • Year to date:
    • Site-wide: 95,857
  • Since beginning of last month:
    • Site-wide: 98,864

Identification and prioritisation of causal variants in human genetic disorders from exome or whole genome sequencing data

bioinformatics more details view paper
  • Downloaded 738 times
  • Download rankings, all-time:
    • Site-wide: 34,670
    • In bioinformatics: 3,833
  • Year to date:
    • Site-wide: 104,457
  • Since beginning of last month:
    • Site-wide: 88,710

Single-fluorescent protein reporters allow parallel quantification of NK cell-mediated granzyme and caspase activities in single target cells

immunology more details view paper
  • Downloaded 709 times
  • Download rankings, all-time:
    • Site-wide: 36,658
    • In immunology: 1,096
  • Year to date:
    • Site-wide: 63,623
  • Since beginning of last month:
    • Site-wide: 42,886

Optogenetic control of Neisseria meningitidis Cas9 genome editing using an engineered, light-switchable anti-CRISPR protein

synthetic biology more details view paper
  • Downloaded 659 times
  • Download rankings, all-time:
    • Site-wide: 40,384
    • In synthetic biology: 503
  • Year to date:
    • Site-wide: 73,244
  • Since beginning of last month:
    • Site-wide: 58,790

Impact of cancer mutational signatures on transcription factor motifs in the human genome

bioinformatics more details view paper
  • Downloaded 638 times
  • Download rankings, all-time:
    • Site-wide: 42,125
    • In bioinformatics: 4,500
  • Year to date:
    • Site-wide: 118,863
  • Since beginning of last month:
    • Site-wide: 110,423

The COVID-19 PHARMACOME: A method for the rational selection of drug repurposing candidates from multimodal knowledge harmonization

bioinformatics more details view paper
  • Downloaded 571 times
  • Download rankings, all-time:
    • Site-wide: 48,364
    • In bioinformatics: 5,014
  • Year to date:
    • Site-wide: 21,973
  • Since beginning of last month:
    • Site-wide: 22,558

Automated screening by 3D light-sheet microscopy with high spatial and temporal resolution reveals mitotic phenotypes

cell biology more details view paper
  • Downloaded 481 times
  • Download rankings, all-time:
    • Site-wide: 59,131
    • In cell biology: 2,598
  • Year to date:
    • Site-wide: 107,793
  • Since beginning of last month:
    • Site-wide: 117,078

Unraveling mitotic protein networks by 3D multiplexed epitope drug screening

systems biology more details view paper
  • Downloaded 405 times
  • Download rankings, all-time:
    • Site-wide: 70,649
    • In systems biology: 1,670
  • Year to date:
    • Site-wide: 134,035
  • Since beginning of last month:
    • Site-wide: 101,753

HTSlib-js: Developer toolkit for a client-side JavaScript interface for HTSlib

bioinformatics more details view paper
  • Downloaded 400 times
  • Download rankings, all-time:
    • Site-wide: 71,400
    • In bioinformatics: 6,781
  • Year to date:
    • Site-wide: 91,735
  • Since beginning of last month:
    • Site-wide: 78,212

Delayed viral clearance and exacerbated airway hyperinflammation in hypertensive COVID-19 patients

infectious diseases more details view paper
  • Downloaded 374 times
  • Download rankings, all-time:
    • Site-wide: 76,043
    • In infectious diseases: 3,465
  • Year to date:
    • Site-wide: 46,593
  • Since beginning of last month:
    • Site-wide: 46,482

Whole-genome fingerprint of the DNA methylome during chemically induced differentiation of the human AML cell line HL-60/S4

genomics more details view paper
  • Downloaded 289 times
  • Download rankings, all-time:
    • Site-wide: 93,208
    • In genomics: 5,775
  • Year to date:
    • Site-wide: 129,816
  • Since beginning of last month:
    • Site-wide: 125,834

Induced aneuploidy disrupts MCF10A acini formation and CCND1 expression

cancer biology more details view paper
  • Downloaded 221 times
  • Download rankings, all-time:
    • Site-wide: 108,912
    • In cancer biology: 3,303
  • Year to date:
    • Site-wide: 100,052
  • Since beginning of last month:
    • Site-wide: 94,083

The DNA methylation landscape of multiple myeloma shows extensive inter- and intrapatient heterogeneity that fuels transcriptomic variability

cancer biology more details view paper
  • Downloaded 199 times
  • Download rankings, all-time:
    • Site-wide: 114,066
    • In cancer biology: 3,478
  • Year to date:
    • Site-wide: 57,261
  • Since beginning of last month:
    • Site-wide: 74,303

Intratumoural heterogeneity and immune modulation in lung adenocarcinoma of female smokers and never smokers

cancer biology more details view paper
  • Downloaded 112 times
  • Download rankings, all-time:
    • Site-wide: 132,899
    • In cancer biology: 4,117
  • Year to date:
    • Site-wide: 38,474
  • Since beginning of last month:
    • Site-wide: 4,784

Integrative Ranking Of Enhancer Networks Facilitates The Discovery Of Epigenetic Markers In Cancer

bioinformatics more details view paper
  • Downloaded 87 times
  • Download rankings, all-time:
    • Site-wide: 137,311
    • In bioinformatics: 10,634
  • Year to date:
    • Site-wide: 114,058
  • Since beginning of last month:
    • Site-wide: 106,396

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