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Author: Jesse Gillis

Rankings

  • All-time downloads: 46,739 (rank: 4,619 )
  • Categories:
    • bioinformatics: 9,627 (rank: 1,140 )
    • developmental biology: 333 (rank: 18,208 (tie) )
    • genetics: 589 (rank: 27,136 (tie) )
    • genomics: 5,247 (rank: 5,285 (tie) )
    • molecular biology: 280 (rank: 26,495 (tie) )
    • neuroscience: 30,006 (rank: 202 )
    • systems biology: 657 (rank: 8,295 (tie) )

Downloads per author, site-wide

Preprints

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

neuroscience more details view paper
  • Downloaded 6,922 times
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    • Site-wide: 1,807
    • In neuroscience: 82
  • Year to date:
    • Site-wide: 61,892
  • Since beginning of last month:
    • Site-wide: 7,862

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

neuroscience more details view paper
  • Downloaded 6,851 times
  • Download rankings, all-time:
    • Site-wide: 1,838
    • In neuroscience: 86
  • Year to date:
    • Site-wide: 6,917
  • Since beginning of last month:
    • Site-wide: 8,118

A multimodal cell census and atlas of the mammalian primary motor cortex

neuroscience more details view paper
  • Downloaded 5,119 times
  • Download rankings, all-time:
    • Site-wide: 2,755
    • In neuroscience: 153
  • Year to date:
    • Site-wide: 109,861
  • Since beginning of last month:
    • Site-wide: 7,855

High-throughput mapping of long-range neuronal projection using in situ sequencing

neuroscience more details view paper
  • Downloaded 4,334 times
  • Download rankings, all-time:
    • Site-wide: 3,445
    • In neuroscience: 214
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 52,532

Cellular Anatomy of the Mouse Primary Motor Cortex

neuroscience more details view paper
  • Downloaded 3,352 times
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    • Site-wide: 4,922
    • In neuroscience: 379
  • Year to date:
    • Site-wide: 4,644
  • Since beginning of last month:
    • Site-wide: 25,534

Is it time to change the reference genome?

genomics more details view paper
  • Downloaded 2,483 times
  • Download rankings, all-time:
    • Site-wide: 7,586
    • In genomics: 763
  • Year to date:
    • Site-wide: 104,449
  • Since beginning of last month:
    • Site-wide: 124,143

Addressing the looming identity crisis in single cell RNA-seq

bioinformatics more details view paper
  • Downloaded 2,053 times
  • Download rankings, all-time:
    • Site-wide: 10,011
    • In bioinformatics: 1,094
  • Year to date:
    • Site-wide: 143,325
  • Since beginning of last month:
    • Site-wide: 162,515

Integrating barcoded neuroanatomy with spatial transcriptional profiling reveals cadherin correlates of projections shared across the cortex

neuroscience more details view paper
  • Downloaded 1,859 times
  • Download rankings, all-time:
    • Site-wide: 11,656
    • In neuroscience: 1,184
  • Year to date:
    • Site-wide: 59,091
  • Since beginning of last month:
    • Site-wide: 91,452

Transcriptional Architecture of Synaptic Communication Delineates Cortical GABAergic Neuron Identity

neuroscience more details view paper
  • Downloaded 1,569 times
  • Download rankings, all-time:
    • Site-wide: 14,985
    • In neuroscience: 1,626
  • Year to date:
    • Site-wide: 99,009
  • Since beginning of last month:
    • Site-wide: 100,859

Improving replicability in single-cell RNA-Seq cell type discovery with Dune

bioinformatics more details view paper
  • Downloaded 1,483 times
  • Download rankings, all-time:
    • Site-wide: 16,391
    • In bioinformatics: 1,815
  • Year to date:
    • Site-wide: 111,474
  • Since beginning of last month:
    • Site-wide: 55,235

The fractured landscape of RNA-seq alignment: The default in our STARs

bioinformatics more details view paper
  • Downloaded 1,397 times
  • Download rankings, all-time:
    • Site-wide: 17,952
    • In bioinformatics: 2,002
  • Year to date:
    • Site-wide: 144,187
  • Since beginning of last month:
    • Site-wide: 144,528

A limited set of transcriptional programs define major cell types

genomics more details view paper
  • Downloaded 1,060 times
  • Download rankings, all-time:
    • Site-wide: 27,251
    • In genomics: 2,396
  • Year to date:
    • Site-wide: 120,275
  • Since beginning of last month:
    • Site-wide: 72,733

Virtue as the mean: Pan-human consensus genome significantly improves the accuracy of RNA-seq analyses

bioinformatics more details view paper
  • Downloaded 880 times
  • Download rankings, all-time:
    • Site-wide: 35,877
    • In bioinformatics: 3,830
  • Year to date:
    • Site-wide: 116,787
  • Since beginning of last month:
    • Site-wide: 23,149

Multi-tissue integrative analysis of personal epigenomes

genomics more details view paper
  • Downloaded 837 times
  • Download rankings, all-time:
    • Site-wide: 38,579
    • In genomics: 3,116
  • Year to date:
    • Site-wide: 13,902
  • Since beginning of last month:
    • Site-wide: 13,848

EGAD: Ultra-fast functional analysis of gene networks

bioinformatics more details view paper
  • Downloaded 669 times
  • Download rankings, all-time:
    • Site-wide: 52,873
    • In bioinformatics: 5,268
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 117,693

Not by systems alone: replicability assessment of disease expression signals

systems biology more details view paper
  • Downloaded 657 times
  • Download rankings, all-time:
    • Site-wide: 54,178
    • In systems biology: 1,143
  • Year to date:
    • Site-wide: 79,417
  • Since beginning of last month:
    • Site-wide: 151,190

Strength of functional signature correlates with effect size in autism

genetics more details view paper
  • Downloaded 589 times
  • Download rankings, all-time:
    • Site-wide: 62,443
    • In genetics: 2,616
  • Year to date:
    • Site-wide: 144,855
  • Since beginning of last month:
    • Site-wide: 147,525

How many markers are needed to robustly determine a cell's type?

bioinformatics more details view paper
  • Downloaded 565 times
  • Download rankings, all-time:
    • Site-wide: 65,698
    • In bioinformatics: 6,275
  • Year to date:
    • Site-wide: 152,750
  • Since beginning of last month:
    • Site-wide: 76,311

A Meta-Analytic Single-Cell Atlas of Mouse Bone Marrow Hematopoietic Development

genomics more details view paper
  • Downloaded 526 times
  • Download rankings, all-time:
    • Site-wide: 71,631
    • In genomics: 4,890
  • Year to date:
    • Site-wide: 4,502
  • Since beginning of last month:
    • Site-wide: 10,447

AuPairWise: a method to estimate RNA-seq replicability through co-expression

bioinformatics more details view paper
  • Downloaded 495 times
  • Download rankings, all-time:
    • Site-wide: 76,790
    • In bioinformatics: 7,048
  • Year to date:
    • Site-wide: 137,471
  • Since beginning of last month:
    • Site-wide: 117,710

Exploiting marker genes for robust classification and characterization of single-cell chromatin accessibility

bioinformatics more details view paper
  • Downloaded 490 times
  • Download rankings, all-time:
    • Site-wide: 77,803
    • In bioinformatics: 7,113
  • Year to date:
    • Site-wide: 91,854
  • Since beginning of last month:
    • Site-wide: 23,019

Coexpression reveals conserved mechanisms of transcriptional cell identity

bioinformatics more details view paper
  • Downloaded 453 times
  • Download rankings, all-time:
    • Site-wide: 84,692
    • In bioinformatics: 7,598
  • Year to date:
    • Site-wide: 47,761
  • Since beginning of last month:
    • Site-wide: 50,396

Multiscale Co-expression in the Brain

bioinformatics more details view paper
  • Downloaded 419 times
  • Download rankings, all-time:
    • Site-wide: 91,673
    • In bioinformatics: 8,061
  • Year to date:
    • Site-wide: 124,183
  • Since beginning of last month:
    • Site-wide: 107,488

Using predictive specificity to determine when gene set analysis is biologically meaningful

bioinformatics more details view paper
  • Downloaded 396 times
  • Download rankings, all-time:
    • Site-wide: 96,850
    • In bioinformatics: 8,373
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 100,342

Replicability of spatial gene expression atlas data from the adult mouse brain

genomics more details view paper
  • Downloaded 341 times
  • Download rankings, all-time:
    • Site-wide: 110,056
    • In genomics: 6,406
  • Year to date:
    • Site-wide: 109,749
  • Since beginning of last month:
    • Site-wide: 138,826

Cross-tissue analysis of allelic X-chromosome inactivation ratios resolves features of human development

developmental biology more details view paper
  • Downloaded 333 times
  • Download rankings, all-time:
    • Site-wide: 112,170
    • In developmental biology: 3,031
  • Year to date:
    • Site-wide: 33,848
  • Since beginning of last month:
    • Site-wide: 21,326

Prevalent and Dynamic Binding of the Cell Cycle Checkpoint Kinase Rad53 to Gene Promoters

molecular biology more details view paper
  • Downloaded 280 times
  • Download rankings, all-time:
    • Site-wide: 126,274
    • In molecular biology: 3,749
  • Year to date:
    • Site-wide: 22,677
  • Since beginning of last month:
    • Site-wide: 65,447

CoCoCoNet: Conserved and Comparative Co-expression Across a Diverse Set of Species

bioinformatics more details view paper
  • Downloaded 197 times
  • Download rankings, all-time:
    • Site-wide: 148,376
    • In bioinformatics: 11,421
  • Year to date:
    • Site-wide: 122,514
  • Since beginning of last month:
    • Site-wide: 130,021

Defining the extent of gene function using ROC curvature

bioinformatics more details view paper
  • Downloaded 130 times
  • Download rankings, all-time:
    • Site-wide: 162,039
    • In bioinformatics: 12,205
  • Year to date:
    • Site-wide: 151,262
  • Since beginning of last month:
    • Site-wide: 113,644

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