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Author: Anand V Sastry

Rankings

  • All-time downloads: 7,518 (rank: 35,228 (tie) )
  • Categories:
    • bioinformatics: 1,589 (rank: 11,291 (tie) )
    • microbiology: 1,747 (rank: 10,600 )
    • systems biology: 4,182 (rank: 1,059 )

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Preprints

Cellular responses to reactive oxygen species can be predicted on multiple biological scales from molecular mechanisms

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    • In systems biology: 453
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The Escherichia coli Transcriptome Mostly Consists of Independently Regulated Modules

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    • Site-wide: 27,709
    • In systems biology: 540
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Adaptive laboratory evolution of Escherichia coli under acid stress

microbiology more details view paper
  • Downloaded 850 times
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    • Site-wide: 36,131
    • In microbiology: 2,136
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    • Site-wide: 40,449

Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655

microbiology more details view paper
  • Downloaded 539 times
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    • Site-wide: 66,892
    • In microbiology: 4,291
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Machine learning uncovers independently regulated modules in the Bacillus subtilis transcriptome

systems biology more details view paper
  • Downloaded 433 times
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    • In systems biology: 1,898
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PRECISE 2.0: an expanded high-quality RNA-seq compendium for Escherichia coli K-12 reveals high-resolution transcriptional regulatory structure

bioinformatics more details view paper
  • Downloaded 417 times
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    • Site-wide: 88,704
    • In bioinformatics: 7,863
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Matrix factorization recovers consistent regulatory signals from disparate datasets

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    • Site-wide: 97,429
    • In bioinformatics: 8,402
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Experimental evolution reveals the genetic basis and systems biology of superoxide stress tolerance

systems biology more details view paper
  • Downloaded 369 times
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    • Site-wide: 99,195
    • In systems biology: 2,183
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Decomposition of transcriptional responses provides insights into differential antibiotic susceptibility

microbiology more details view paper
  • Downloaded 358 times
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    • In microbiology: 7,060
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Optimal dimensionality selection for independent component analysis of transcriptomic data

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    • In bioinformatics: 9,329
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iModulonDB: a knowledgebase of microbial transcriptional regulation derived from machine learning

systems biology more details view paper
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    • Site-wide: 118,285
    • In systems biology: 2,568
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Elucidation of regulatory modes for five two-component systems in Escherichia coli reveals novel relationships

systems biology more details view paper
  • Downloaded 274 times
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    • Site-wide: 123,197
    • In systems biology: 2,674
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Mining all publicly available expression data to compute dynamic microbial transcriptional regulatory networks

bioinformatics more details view paper
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    • In bioinformatics: 10,044
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Machine learning of all Mycobacterium Tuberculosis H37Rv RNA-seq data reveals complex interplay between metabolism, stress response, and infection

systems biology more details view paper
  • Downloaded 258 times
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    • In systems biology: 2,733
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Reconstruction of Fur pan-regulon uncovers the complexity and diversity of transcriptional regulation in E. coli

systems biology more details view paper
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    • Site-wide: 131,759
    • In systems biology: 2,808
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Machine Learning of Pseudomonas aeruginosa transcriptomes identifies independently modulated sets of genes associated with known transcriptional regulators

bioinformatics more details view paper
  • Downloaded 212 times
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    • Site-wide: 139,329
    • In bioinformatics: 10,866
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Machine learning uncovers a data-driven transcriptional regulatory network for the Crenarchaeal thermoacidophile Sulfolobus acidocaldarius

systems biology more details view paper
  • Downloaded 167 times
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    • Site-wide: 149,608
    • In systems biology: 3,105
  • Year to date:
    • Site-wide: 71,478
  • Since beginning of last month:
    • Site-wide: 88,754

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