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Author: Barbara E Engelhardt

Rankings

  • All-time downloads: 27,080 (rank: 1,809 out of 397,487)
  • Categories:
    • bioinformatics: 4,359 (rank: 2,189 (tie) out of 33,896)
    • genomics: 21,937 (rank: 395 out of 42,202)
    • systems biology: 784 (rank: 4,106 (tie) out of 11,593)

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Preprints

Local genetic effects on gene expression across 44 human tissues

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    • In genomics: 214 out of 5,863
  • Year to date:
    • Site-wide: 42,376 out of 93,091
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    • Site-wide: 43,142 out of 93,091

Co-expression networks reveal the tissue-specific regulation of transcription and splicing

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    • Site-wide: 1,385 out of 93,091
    • In genomics: 293 out of 5,863
  • Year to date:
    • Site-wide: 2,813 out of 93,091
  • Since beginning of last month:
    • Site-wide: 55,143 out of 93,091

Joint analysis of gene expression levels and histological images identifies genes associated with tissue morphology

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  • Downloaded 2,686 times
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    • Site-wide: 2,338 out of 93,091
    • In genomics: 441 out of 5,863
  • Year to date:
    • Site-wide: 3,142 out of 93,091
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    • Site-wide: 2,411 out of 93,091

Distant regulatory effects of genetic variation in multiple human tissues

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  • Downloaded 2,674 times
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    • Site-wide: 2,356 out of 93,091
    • In genomics: 443 out of 5,863
  • Year to date:
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    • Site-wide: 55,170 out of 93,091

Optimal gene selection for cell type discrimination in single cell analyses

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    • Site-wide: 3,056 out of 93,091
    • In genomics: 571 out of 5,863
  • Year to date:
    • Site-wide: 5,947 out of 93,091
  • Since beginning of last month:
    • Site-wide: 10,058 out of 93,091

Clustering gene expression time series data using an infinite Gaussian process mixture model

bioinformatics more details view paper
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    • Site-wide: 3,211 out of 93,091
    • In bioinformatics: 572 out of 8,711
  • Year to date:
    • Site-wide: 13,814 out of 93,091
  • Since beginning of last month:
    • Site-wide: 21,580 out of 93,091

netNMF-sc: Leveraging gene-gene interactions for imputation and dimensionality reduction in single-cell expression analysis

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  • Downloaded 2,072 times
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    • Site-wide: 3,602 out of 93,091
    • In genomics: 642 out of 5,863
  • Year to date:
    • Site-wide: 6,795 out of 93,091
  • Since beginning of last month:
    • Site-wide: 9,535 out of 93,091

A robust nonlinear low-dimensional manifold for single cell RNA-seq data

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    • Site-wide: 5,466 out of 93,091
    • In genomics: 893 out of 5,863
  • Year to date:
    • Site-wide: 10,900 out of 93,091
  • Since beginning of last month:
    • Site-wide: 19,759 out of 93,091

Many long intergenic non-coding RNAs distally regulate mRNA gene expression levels

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    • Site-wide: 5,722 out of 93,091
    • In genomics: 937 out of 5,863
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    • Site-wide: 50,627 out of 93,091
  • Since beginning of last month:
    • Site-wide: 46,900 out of 93,091

Causal Network Inference from Gene Transcriptional Time Series Response to Glucocorticoids

bioinformatics more details view paper
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    • Site-wide: 8,986 out of 93,091
    • In bioinformatics: 1,494 out of 8,711
  • Year to date:
    • Site-wide: 5,014 out of 93,091
  • Since beginning of last month:
    • Site-wide: 3,803 out of 93,091

GT-TS: Experimental design for maximizing cell type discovery in single-cell data

genomics more details view paper
  • Downloaded 1,092 times
  • Download rankings, all-time:
    • Site-wide: 10,431 out of 93,091
    • In genomics: 1,500 out of 5,863
  • Year to date:
    • Site-wide: 33,362 out of 93,091
  • Since beginning of last month:
    • Site-wide: 23,580 out of 93,091

A Bayesian nonparametric semi-supervised model for integration of multiple single-cell experiments

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    • Site-wide: 13,193 out of 93,091
    • In bioinformatics: 2,073 out of 8,711
  • Year to date:
    • Site-wide: 1,942 out of 93,091
  • Since beginning of last month:
    • Site-wide: 16,892 out of 93,091

Detecting differential growth of microbial populations with Gaussian process regression

systems biology more details view paper
  • Downloaded 784 times
  • Download rankings, all-time:
    • Site-wide: 17,594 out of 93,091
    • In systems biology: 479 out of 2,380
  • Year to date:
    • Site-wide: 68,125 out of 93,091
  • Since beginning of last month:
    • Site-wide: 54,889 out of 93,091

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