Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,459 bioRxiv papers from 297,237 authors.

Downloads per author, site-wide

Preprints

Genome Graphs

• Downloaded 7,802 times
• Download rankings, all-time:
  • Site-wide: 194 out of 67,446
  • In bioinformatics: 30 out of 6,644
• Year to date:
  • Site-wide: 950 out of 67,446
• Since beginning of last month:
  • Site-wide: 3,435 out of 67,446

Rapid and efficient analysis of 20,000 RNA-seq samples with Toil

• Downloaded 5,854 times
• Download rankings, all-time:
  • Site-wide: 335 out of 67,446
  • In bioinformatics: 63 out of 6,644
• Year to date:
  • Site-wide: 3,065 out of 67,446
• Since beginning of last month:
  • Site-wide: 8,429 out of 67,446

Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit

• Downloaded 5,000 times
• Download rankings, all-time:
  • Site-wide: 435 out of 67,446
  • In bioinformatics: 87 out of 6,644
• Year to date:
  • Site-wide: 94 out of 67,446
• Since beginning of last month:
  • Site-wide: 169 out of 67,446

The UCSC Xena platform for public and private cancer genomics data visualization and interpretation

• Downloaded 3,579 times
• Download rankings, all-time:
  • Site-wide: 848 out of 67,446
  • In cancer biology: 25 out of 2,271
• Year to date:
  • Site-wide: 352 out of 67,446
• Since beginning of last month:
  • Site-wide: 796 out of 67,446

Alignathon: A competitive assessment of whole genome alignment methods.

• Downloaded 3,128 times
• Download rankings, all-time:
  • Site-wide: 1,097 out of 67,446
  • In bioinformatics: 222 out of 6,644
• Year to date:
  • Site-wide: 22,969 out of 67,446
• Since beginning of last month:
  • Site-wide: 29,332 out of 67,446

Linear Assembly of a Human Y Centromere

• Downloaded 2,551 times
• Download rankings, all-time:
  • Site-wide: 1,569 out of 67,446
  • In genomics: 350 out of 4,574
• Year to date:
  • Site-wide: 26,164 out of 67,446
• Since beginning of last month:
  • Site-wide: 12,985 out of 67,446

Human-specific NOTCH-like genes in a region linked to neurodevelopmental disorders affect cortical neurogenesis

• Downloaded 1,918 times
• Download rankings, all-time:
  • Site-wide: 2,627 out of 67,446
  • In neuroscience: 390 out of 12,079
• Year to date:
  • Site-wide: 8,727 out of 67,446
• Since beginning of last month:
  • Site-wide: 21,236 out of 67,446

Online resources for data exploration, visualization, and discovery for the Pan-Cancer Analysis of Whole Genomes project (PCAWG)

• Downloaded 1,621 times
• Download rankings, all-time:
  • Site-wide: 3,478 out of 67,446
  • In bioinformatics: 693 out of 6,644
• Year to date:
  • Site-wide: 6,036 out of 67,446
• Since beginning of last month:
  • Site-wide: 8,006 out of 67,446

Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution

• Downloaded 1,588 times
• Download rankings, all-time:
  • Site-wide: 3,604 out of 67,446
  • In developmental biology: 55 out of 2,003
• Year to date:
  • Site-wide: 1,058 out of 67,446
• Since beginning of last month:
  • Site-wide: 2,223 out of 67,446

Comparative Annotation Toolkit (CAT) - simultaneous clade and personal genome annotation

• Downloaded 1,504 times
• Download rankings, all-time:
  • Site-wide: 3,975 out of 67,446
  • In bioinformatics: 788 out of 6,644
• Year to date:
  • Site-wide: 7,173 out of 67,446
• Since beginning of last month:
  • Site-wide: 29,549 out of 67,446

Progressive alignment with Cactus: a multiple-genome aligner for the thousand-genome era

• Downloaded 1,426 times
• Download rankings, all-time:
  • Site-wide: 4,332 out of 67,446
  • In genomics: 778 out of 4,574
• Year to date:
  • Site-wide: 1,044 out of 67,446
• Since beginning of last month:
  • Site-wide: 909 out of 67,446

The UCSC Genome Browser database: 2016 update

• Downloaded 1,251 times
• Download rankings, all-time:
  • Site-wide: 5,382 out of 67,446
  • In genomics: 926 out of 4,574
• Year to date:
  • Site-wide: 59,081 out of 67,446
• Since beginning of last month:
  • Site-wide: 61,950 out of 67,446

Genomic profiling of childhood tumor patient-derived xenograft models to enable rational clinical trial design

• Downloaded 1,166 times
• Download rankings, all-time:
  • Site-wide: 6,072 out of 67,446
  • In genomics: 1,011 out of 4,574
• Year to date:
  • Site-wide: 1,510 out of 67,446
• Since beginning of last month:
  • Site-wide: 5,639 out of 67,446

A Flow Procedure for the Linearization of Genome Sequence Graphs.

• Downloaded 901 times
• Download rankings, all-time:
  • Site-wide: 9,189 out of 67,446
  • In bioinformatics: 1,598 out of 6,644
• Year to date:
  • Site-wide: 39,729 out of 67,446
• Since beginning of last month:
  • Site-wide: 27,163 out of 67,446

Structurally conserved primate lncRNAs are transiently expressed during human cortical differentiation and influence cell type specific genes

• Downloaded 856 times
• Download rankings, all-time:
  • Site-wide: 9,961 out of 67,446
  • In neuroscience: 1,576 out of 12,079
• Year to date:
  • Site-wide: 19,712 out of 67,446
• Since beginning of last month:
  • Site-wide: 33,491 out of 67,446

Cis-Compound Mutations are Prevalent in Triple Negative Breast Cancer and Can Drive Tumor Progression

• Downloaded 780 times
• Download rankings, all-time:
  • Site-wide: 11,521 out of 67,446
  • In clinical trials: 18 out of 99
• Year to date:
  • Site-wide: 20,463 out of 67,446
• Since beginning of last month:
  • Site-wide: 8,329 out of 67,446

Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic structural variant detection

• Downloaded 760 times
• Download rankings, all-time:
  • Site-wide: 11,927 out of 67,446
  • In bioinformatics: 1,982 out of 6,644
• Year to date:
  • Site-wide: 27,938 out of 67,446
• Since beginning of last month:
  • Site-wide: 19,784 out of 67,446

The UCSC Repeat Browser allows discovery and visualization of evolutionary conflict across repeat families

• Downloaded 679 times
• Download rankings, all-time:
  • Site-wide: 14,057 out of 67,446
  • In genomics: 1,870 out of 4,574
• Year to date:
  • Site-wide: 8,265 out of 67,446
• Since beginning of last month:
  • Site-wide: 7,352 out of 67,446

ProTECT: Prediction of T-cell Epitopes for Cancer Therapy

• Downloaded 349 times
• Download rankings, all-time:
  • Site-wide: 31,644 out of 67,446
  • In bioinformatics: 4,046 out of 6,644
• Year to date:
  • Site-wide: 11,802 out of 67,446
• Since beginning of last month:
  • Site-wide: 27,214 out of 67,446

KRAB Zinc Finger Proteins coordinate across evolutionary time scales to battle retroelements

• Downloaded 348 times
• Download rankings, all-time:
  • Site-wide: 31,778 out of 67,446
  • In evolutionary biology: 2,377 out of 4,471
• Year to date:
  • Site-wide: 24,285 out of 67,446
• Since beginning of last month:
  • Site-wide: 39,817 out of 67,446

Framework for determining accuracy of RNA sequencing data for gene expression profiling of single samples

• Downloaded 169 times
• Download rankings, all-time:
  • Site-wide: 52,901 out of 67,446
  • In genomics: 4,085 out of 4,574
• Year to date:
  • Site-wide: 31,201 out of 67,446
• Since beginning of last month:
  • Site-wide: 19,060 out of 67,446