Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,524 bioRxiv papers from 264,866 authors.

Author: David Haussler

Rankings

  • All-time downloads: 35,666 (rank: 392 out of 264,889)
  • Categories:
    • bioinformatics: 22,760 (rank: 67 out of 23,134)
    • cancer biology: 2,820 (rank: 489 (tie) out of 15,335)
    • clinical trials: 706 (rank: 187 (tie) out of 1,034)
    • developmental biology: 1,224 (rank: 923 (tie) out of 9,433)
    • evolutionary biology: 278 (rank: 10,133 (tie) out of 14,397)
    • genomics: 5,228 (rank: 2,187 out of 30,302)
    • neuroscience: 2,650 (rank: 2,696 (tie) out of 41,418)

Downloads per author, site-wide

Preprints

Progressive alignment with Cactus: a multiple-genome aligner for the thousand-genome era

genomics more details view paper

No bioRxiv download data for this paper yet.

Genome Graphs

bioinformatics more details view paper
  • Downloaded 7,415 times
  • Download rankings, all-time:
    • Site-wide: 170 out of 57,529
    • In bioinformatics: 31 out of 5,865
  • Year to date:
    • Site-wide: 882 out of 57,529
  • Since beginning of last month:
    • Site-wide: 1,663 out of 57,529

Rapid and efficient analysis of 20,000 RNA-seq samples with Toil

bioinformatics more details view paper
  • Downloaded 5,611 times
  • Download rankings, all-time:
    • Site-wide: 307 out of 57,529
    • In bioinformatics: 58 out of 5,865
  • Year to date:
    • Site-wide: 3,158 out of 57,529
  • Since beginning of last month:
    • Site-wide: 3,518 out of 57,529

Alignathon: A competitive assessment of whole genome alignment methods.

bioinformatics more details view paper
  • Downloaded 3,071 times
  • Download rankings, all-time:
    • Site-wide: 949 out of 57,529
    • In bioinformatics: 193 out of 5,865
  • Year to date:
    • Site-wide: 19,536 out of 57,529
  • Since beginning of last month:
    • Site-wide: 23,013 out of 57,529

The UCSC Xena platform for public and private cancer genomics data visualization and interpretation

cancer biology more details view paper
  • Downloaded 2,820 times
  • Download rankings, all-time:
    • Site-wide: 1,113 out of 57,529
    • In cancer biology: 30 out of 1,856
  • Year to date:
    • Site-wide: 361 out of 57,529
  • Since beginning of last month:
    • Site-wide: 349 out of 57,529

Linear Assembly of a Human Y Centromere

genomics more details view paper
  • Downloaded 2,481 times
  • Download rankings, all-time:
    • Site-wide: 1,394 out of 57,529
    • In genomics: 328 out of 4,030
  • Year to date:
    • Site-wide: 25,981 out of 57,529
  • Since beginning of last month:
    • Site-wide: 24,976 out of 57,529

Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit

bioinformatics more details view paper
  • Downloaded 1,929 times
  • Download rankings, all-time:
    • Site-wide: 2,181 out of 57,529
    • In bioinformatics: 449 out of 5,865
  • Year to date:
    • Site-wide: 302 out of 57,529
  • Since beginning of last month:
    • Site-wide: 21 out of 57,529

Human-specific NOTCH-like genes in a region linked to neurodevelopmental disorders affect cortical neurogenesis

neuroscience more details view paper
  • Downloaded 1,840 times
  • Download rankings, all-time:
    • Site-wide: 2,346 out of 57,529
    • In neuroscience: 339 out of 10,118
  • Year to date:
    • Site-wide: 6,697 out of 57,529
  • Since beginning of last month:
    • Site-wide: 9,143 out of 57,529

Online resources for data exploration, visualization, and discovery for the Pan-Cancer Analysis of Whole Genomes project (PCAWG)

bioinformatics more details view paper
  • Downloaded 1,452 times
  • Download rankings, all-time:
    • Site-wide: 3,513 out of 57,529
    • In bioinformatics: 707 out of 5,865
  • Year to date:
    • Site-wide: 6,294 out of 57,529
  • Since beginning of last month:
    • Site-wide: 2,872 out of 57,529

Comparative Annotation Toolkit (CAT) - simultaneous clade and personal genome annotation

bioinformatics more details view paper
  • Downloaded 1,435 times
  • Download rankings, all-time:
    • Site-wide: 3,590 out of 57,529
    • In bioinformatics: 720 out of 5,865
  • Year to date:
    • Site-wide: 5,128 out of 57,529
  • Since beginning of last month:
    • Site-wide: 13,391 out of 57,529

Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution

developmental biology more details view paper
  • Downloaded 1,224 times
  • Download rankings, all-time:
    • Site-wide: 4,645 out of 57,529
    • In developmental biology: 90 out of 1,708
  • Year to date:
    • Site-wide: 974 out of 57,529
  • Since beginning of last month:
    • Site-wide: 1,546 out of 57,529

The UCSC Genome Browser database: 2016 update

genomics more details view paper
  • Downloaded 1,217 times
  • Download rankings, all-time:
    • Site-wide: 4,689 out of 57,529
    • In genomics: 829 out of 4,030
  • Year to date:
    • Site-wide: 54,309 out of 57,529
  • Since beginning of last month:
    • Site-wide: 45,830 out of 57,529

Genomic profiling of childhood tumor patient-derived xenograft models to enable rational clinical trial design

genomics more details view paper
  • Downloaded 908 times
  • Download rankings, all-time:
    • Site-wide: 7,564 out of 57,529
    • In genomics: 1,187 out of 4,030
  • Year to date:
    • Site-wide: 1,267 out of 57,529
  • Since beginning of last month:
    • Site-wide: 2,897 out of 57,529

A Flow Procedure for the Linearization of Genome Sequence Graphs.

bioinformatics more details view paper
  • Downloaded 857 times
  • Download rankings, all-time:
    • Site-wide: 8,255 out of 57,529
    • In bioinformatics: 1,469 out of 5,865
  • Year to date:
    • Site-wide: 36,053 out of 57,529
  • Since beginning of last month:
    • Site-wide: 44,214 out of 57,529

Structurally conserved primate lncRNAs are transiently expressed during human cortical differentiation and influence cell type specific genes

neuroscience more details view paper
  • Downloaded 810 times
  • Download rankings, all-time:
    • Site-wide: 9,040 out of 57,529
    • In neuroscience: 1,396 out of 10,118
  • Year to date:
    • Site-wide: 15,058 out of 57,529
  • Since beginning of last month:
    • Site-wide: 26,093 out of 57,529

Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic structural variant detection

bioinformatics more details view paper
  • Downloaded 711 times
  • Download rankings, all-time:
    • Site-wide: 10,892 out of 57,529
    • In bioinformatics: 1,847 out of 5,865
  • Year to date:
    • Site-wide: 23,772 out of 57,529
  • Since beginning of last month:
    • Site-wide: 33,384 out of 57,529

Cis-Compound Mutations are Prevalent in Triple Negative Breast Cancer and Can Drive Tumor Progression

clinical trials more details view paper
  • Downloaded 706 times
  • Download rankings, all-time:
    • Site-wide: 11,033 out of 57,529
    • In clinical trials: 15 out of 99
  • Year to date:
    • Site-wide: 19,134 out of 57,529
  • Since beginning of last month:
    • Site-wide: 38,227 out of 57,529

The UCSC Repeat Browser allows discovery and visualization of evolutionary conflict across repeat families

genomics more details view paper
  • Downloaded 532 times
  • Download rankings, all-time:
    • Site-wide: 16,184 out of 57,529
    • In genomics: 2,032 out of 4,030
  • Year to date:
    • Site-wide: 8,939 out of 57,529
  • Since beginning of last month:
    • Site-wide: 9,175 out of 57,529

ProTECT: Prediction of T-cell Epitopes for Cancer Therapy

bioinformatics more details view paper
  • Downloaded 279 times
  • Download rankings, all-time:
    • Site-wide: 31,759 out of 57,529
    • In bioinformatics: 4,073 out of 5,865
  • Year to date:
    • Site-wide: 9,293 out of 57,529
  • Since beginning of last month:
    • Site-wide: 674 out of 57,529

KRAB Zinc Finger Proteins coordinate across evolutionary time scales to battle retroelements

evolutionary biology more details view paper
  • Downloaded 278 times
  • Download rankings, all-time:
    • Site-wide: 31,866 out of 57,529
    • In evolutionary biology: 2,453 out of 3,943
  • Year to date:
    • Site-wide: 23,376 out of 57,529
  • Since beginning of last month:
    • Site-wide: 12,974 out of 57,529

Framework for determining accuracy of RNA sequencing data for gene expression profiling of single samples

genomics more details view paper
  • Downloaded 90 times
  • Download rankings, all-time:
    • Site-wide: 53,252 out of 57,529
    • In genomics: 3,913 out of 4,030
  • Year to date:
    • Site-wide: 35,123 out of 57,529
  • Since beginning of last month:
    • Site-wide: 4,389 out of 57,529

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News