Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,524 bioRxiv papers from 264,866 authors.

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Preprints

Progressive alignment with Cactus: a multiple-genome aligner for the thousand-genome era

No bioRxiv download data for this paper yet.

Genome Graphs

• Downloaded 7,415 times
• Download rankings, all-time:
  • Site-wide: 170 out of 57,529
  • In bioinformatics: 31 out of 5,865
• Year to date:
  • Site-wide: 882 out of 57,529
• Since beginning of last month:
  • Site-wide: 1,663 out of 57,529

Rapid and efficient analysis of 20,000 RNA-seq samples with Toil

• Downloaded 5,611 times
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  • Site-wide: 307 out of 57,529
  • In bioinformatics: 58 out of 5,865
• Year to date:
  • Site-wide: 3,158 out of 57,529
• Since beginning of last month:
  • Site-wide: 3,518 out of 57,529

Alignathon: A competitive assessment of whole genome alignment methods.

• Downloaded 3,071 times
• Download rankings, all-time:
  • Site-wide: 949 out of 57,529
  • In bioinformatics: 193 out of 5,865
• Year to date:
  • Site-wide: 19,536 out of 57,529
• Since beginning of last month:
  • Site-wide: 23,013 out of 57,529

The UCSC Xena platform for public and private cancer genomics data visualization and interpretation

• Downloaded 2,820 times
• Download rankings, all-time:
  • Site-wide: 1,113 out of 57,529
  • In cancer biology: 30 out of 1,856
• Year to date:
  • Site-wide: 361 out of 57,529
• Since beginning of last month:
  • Site-wide: 349 out of 57,529

Linear Assembly of a Human Y Centromere

• Downloaded 2,481 times
• Download rankings, all-time:
  • Site-wide: 1,394 out of 57,529
  • In genomics: 328 out of 4,030
• Year to date:
  • Site-wide: 25,981 out of 57,529
• Since beginning of last month:
  • Site-wide: 24,976 out of 57,529

Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit

• Downloaded 1,929 times
• Download rankings, all-time:
  • Site-wide: 2,181 out of 57,529
  • In bioinformatics: 449 out of 5,865
• Year to date:
  • Site-wide: 302 out of 57,529
• Since beginning of last month:
  • Site-wide: 21 out of 57,529

Human-specific NOTCH-like genes in a region linked to neurodevelopmental disorders affect cortical neurogenesis

• Downloaded 1,840 times
• Download rankings, all-time:
  • Site-wide: 2,346 out of 57,529
  • In neuroscience: 339 out of 10,118
• Year to date:
  • Site-wide: 6,697 out of 57,529
• Since beginning of last month:
  • Site-wide: 9,143 out of 57,529

Online resources for data exploration, visualization, and discovery for the Pan-Cancer Analysis of Whole Genomes project (PCAWG)

• Downloaded 1,452 times
• Download rankings, all-time:
  • Site-wide: 3,513 out of 57,529
  • In bioinformatics: 707 out of 5,865
• Year to date:
  • Site-wide: 6,294 out of 57,529
• Since beginning of last month:
  • Site-wide: 2,872 out of 57,529

Comparative Annotation Toolkit (CAT) - simultaneous clade and personal genome annotation

• Downloaded 1,435 times
• Download rankings, all-time:
  • Site-wide: 3,590 out of 57,529
  • In bioinformatics: 720 out of 5,865
• Year to date:
  • Site-wide: 5,128 out of 57,529
• Since beginning of last month:
  • Site-wide: 13,391 out of 57,529

Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution

• Downloaded 1,224 times
• Download rankings, all-time:
  • Site-wide: 4,645 out of 57,529
  • In developmental biology: 90 out of 1,708
• Year to date:
  • Site-wide: 974 out of 57,529
• Since beginning of last month:
  • Site-wide: 1,546 out of 57,529

The UCSC Genome Browser database: 2016 update

• Downloaded 1,217 times
• Download rankings, all-time:
  • Site-wide: 4,689 out of 57,529
  • In genomics: 829 out of 4,030
• Year to date:
  • Site-wide: 54,309 out of 57,529
• Since beginning of last month:
  • Site-wide: 45,830 out of 57,529

Genomic profiling of childhood tumor patient-derived xenograft models to enable rational clinical trial design

• Downloaded 908 times
• Download rankings, all-time:
  • Site-wide: 7,564 out of 57,529
  • In genomics: 1,187 out of 4,030
• Year to date:
  • Site-wide: 1,267 out of 57,529
• Since beginning of last month:
  • Site-wide: 2,897 out of 57,529

A Flow Procedure for the Linearization of Genome Sequence Graphs.

• Downloaded 857 times
• Download rankings, all-time:
  • Site-wide: 8,255 out of 57,529
  • In bioinformatics: 1,469 out of 5,865
• Year to date:
  • Site-wide: 36,053 out of 57,529
• Since beginning of last month:
  • Site-wide: 44,214 out of 57,529

Structurally conserved primate lncRNAs are transiently expressed during human cortical differentiation and influence cell type specific genes

• Downloaded 810 times
• Download rankings, all-time:
  • Site-wide: 9,040 out of 57,529
  • In neuroscience: 1,396 out of 10,118
• Year to date:
  • Site-wide: 15,058 out of 57,529
• Since beginning of last month:
  • Site-wide: 26,093 out of 57,529

Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic structural variant detection

• Downloaded 711 times
• Download rankings, all-time:
  • Site-wide: 10,892 out of 57,529
  • In bioinformatics: 1,847 out of 5,865
• Year to date:
  • Site-wide: 23,772 out of 57,529
• Since beginning of last month:
  • Site-wide: 33,384 out of 57,529

Cis-Compound Mutations are Prevalent in Triple Negative Breast Cancer and Can Drive Tumor Progression

• Downloaded 706 times
• Download rankings, all-time:
  • Site-wide: 11,033 out of 57,529
  • In clinical trials: 15 out of 99
• Year to date:
  • Site-wide: 19,134 out of 57,529
• Since beginning of last month:
  • Site-wide: 38,227 out of 57,529

The UCSC Repeat Browser allows discovery and visualization of evolutionary conflict across repeat families

• Downloaded 532 times
• Download rankings, all-time:
  • Site-wide: 16,184 out of 57,529
  • In genomics: 2,032 out of 4,030
• Year to date:
  • Site-wide: 8,939 out of 57,529
• Since beginning of last month:
  • Site-wide: 9,175 out of 57,529

ProTECT: Prediction of T-cell Epitopes for Cancer Therapy

• Downloaded 279 times
• Download rankings, all-time:
  • Site-wide: 31,759 out of 57,529
  • In bioinformatics: 4,073 out of 5,865
• Year to date:
  • Site-wide: 9,293 out of 57,529
• Since beginning of last month:
  • Site-wide: 674 out of 57,529

KRAB Zinc Finger Proteins coordinate across evolutionary time scales to battle retroelements

• Downloaded 278 times
• Download rankings, all-time:
  • Site-wide: 31,866 out of 57,529
  • In evolutionary biology: 2,453 out of 3,943
• Year to date:
  • Site-wide: 23,376 out of 57,529
• Since beginning of last month:
  • Site-wide: 12,974 out of 57,529

Framework for determining accuracy of RNA sequencing data for gene expression profiling of single samples

• Downloaded 90 times
• Download rankings, all-time:
  • Site-wide: 53,252 out of 57,529
  • In genomics: 3,913 out of 4,030
• Year to date:
  • Site-wide: 35,123 out of 57,529
• Since beginning of last month:
  • Site-wide: 4,389 out of 57,529