Author: David Haussler

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Preprints

A Complete Pedigree-Based Graph Workflow for Rare Candidate Variant Analysis

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Genome Graphs

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Towards complete and error-free genome assemblies of all vertebrate species

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Progressive alignment with Cactus: a multiple-genome aligner for the thousand-genome era

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Alignathon: A competitive assessment of whole genome alignment methods.

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A user’s guide to the online resources for data exploration, visualization, and discovery for the Pan-Cancer Analysis of Whole Genomes project (PCAWG)

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Linear Assembly of a Human Y Centromere

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Human-specific NOTCH-like genes in a region linked to neurodevelopmental disorders affect cortical neurogenesis

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Genotyping common, large structural variations in 5,202 genomes using pangenomes, the Giraffe mapper, and the vg toolkit

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Genomic profiling of childhood tumor patient-derived xenograft models to enable rational clinical trial design

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The UCSC SARS-CoV-2 Genome Browser

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The UCSC Genome Browser database: 2016 update

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The UCSC Repeat Browser allows discovery and visualization of evolutionary conflict across repeat families

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Ultrafast Sample Placement on Existing Trees (UShER) Empowers Real-Time Phylogenetics for the SARS-CoV-2 Pandemic

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Structurally conserved primate lncRNAs are transiently expressed during human cortical differentiation and influence cell type specific genes

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A new SARS-CoV-2 lineage that shares mutations with known Variants of Concern is rejected by automated sequence repository quality control

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Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic structural variant detection

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Development of a Low-Cost System for Simultaneous Longitudinal Biological Imaging

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KRAB Zinc Finger Proteins coordinate across evolutionary time scales to battle retroelements

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ProTECT: Prediction of T-cell Epitopes for Cancer Therapy

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Pandemic-Scale Phylogenomics Reveals Elevated Recombination Rates in the SARS-CoV-2 Spike Region

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The case for using Mapped Exonic Non-Duplicate (MEND) read counts in RNA-Seq experiments: examples from pediatric cancer datasets

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Light-weight Electrophysiology Hardware and Software Platform for Cloud-Based Neural Recording Experiments

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A daily-updated database and tools for comprehensive SARS-CoV-2 mutation-annotated trees

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Internet of Things Architecture for High Throughput Biology

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