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Author: David Haussler

Rankings

  • All-time downloads: 49,030 (rank: 4,054 )
  • Categories:
    • bioengineering: 1,595 (rank: 2,638 (tie) )
    • bioinformatics: 20,228 (rank: 355 )
    • evolutionary biology: 1,258 (rank: 6,326 (tie) )
    • genomics: 22,399 (rank: 596 )
    • neuroscience: 3,550 (rank: 7,405 (tie) )

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Preprints

A Complete Pedigree-Based Graph Workflow for Rare Candidate Variant Analysis

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Genome Graphs

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    • Site-wide: 10,506
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Towards complete and error-free genome assemblies of all vertebrate species

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    • Site-wide: 2,089
    • In genomics: 169
  • Year to date:
    • Site-wide: 2,219
  • Since beginning of last month:
    • Site-wide: 21,341

Progressive alignment with Cactus: a multiple-genome aligner for the thousand-genome era

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  • Downloaded 4,049 times
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    • Site-wide: 3,576
    • In genomics: 352
  • Year to date:
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    • Site-wide: 37,126

Alignathon: A competitive assessment of whole genome alignment methods.

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    • In bioinformatics: 430
  • Year to date:
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A user’s guide to the online resources for data exploration, visualization, and discovery for the Pan-Cancer Analysis of Whole Genomes project (PCAWG)

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  • Downloaded 2,838 times
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    • Site-wide: 5,942
    • In bioinformatics: 592
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    • Site-wide: 33,922

Linear Assembly of a Human Y Centromere

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  • Downloaded 2,796 times
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    • Site-wide: 6,087
    • In genomics: 613
  • Year to date:
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Human-specific NOTCH-like genes in a region linked to neurodevelopmental disorders affect cortical neurogenesis

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  • Downloaded 2,476 times
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    • In neuroscience: 663
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    • Site-wide: 135,022

Genotyping common, large structural variations in 5,202 genomes using pangenomes, the Giraffe mapper, and the vg toolkit

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  • Downloaded 2,417 times
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    • Site-wide: 7,538
    • In bioinformatics: 803
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    • Site-wide: 2,580
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    • Site-wide: 4,155

Genomic profiling of childhood tumor patient-derived xenograft models to enable rational clinical trial design

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  • Downloaded 2,257 times
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    • Site-wide: 8,346
    • In genomics: 836
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    • Site-wide: 57,526

The UCSC SARS-CoV-2 Genome Browser

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  • Downloaded 1,855 times
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    • Site-wide: 11,162
    • In genomics: 1,107
  • Year to date:
    • Site-wide: 33,127
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    • Site-wide: 134,484

The UCSC Genome Browser database: 2016 update

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  • Downloaded 1,506 times
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    • Site-wide: 15,335
    • In genomics: 1,497
  • Year to date:
    • Site-wide: 87,666
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    • Site-wide: 140,265

The UCSC Repeat Browser allows discovery and visualization of evolutionary conflict across repeat families

genomics more details view paper
  • Downloaded 1,241 times
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    • Site-wide: 20,556
    • In genomics: 1,923
  • Year to date:
    • Site-wide: 102,263
  • Since beginning of last month:
    • Site-wide: 154,483

Ultrafast Sample Placement on Existing Trees (UShER) Empowers Real-Time Phylogenetics for the SARS-CoV-2 Pandemic

genomics more details view paper
  • Downloaded 1,190 times
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    • Site-wide: 21,931
    • In genomics: 2,039
  • Year to date:
    • Site-wide: 8,608
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    • Site-wide: 65,496

Structurally conserved primate lncRNAs are transiently expressed during human cortical differentiation and influence cell type specific genes

neuroscience more details view paper
  • Downloaded 1,074 times
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    • Site-wide: 25,650
    • In neuroscience: 3,172
  • Year to date:
    • Site-wide: 120,208
  • Since beginning of last month:
    • Site-wide: 159,401

A new SARS-CoV-2 lineage that shares mutations with known Variants of Concern is rejected by automated sequence repository quality control

genomics more details view paper
  • Downloaded 1,000 times
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    • Site-wide: 28,499
    • In genomics: 2,507
  • Year to date:
    • Site-wide: 5,377
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    • Site-wide: 26,590

Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic structural variant detection

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  • Downloaded 961 times
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    • Site-wide: 30,215
    • In bioinformatics: 3,350
  • Year to date:
    • Site-wide: 154,417
  • Since beginning of last month:
    • Site-wide: 152,652

Development of a Low-Cost System for Simultaneous Longitudinal Biological Imaging

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  • Downloaded 729 times
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    • Site-wide: 45,158
    • In bioengineering: 846
  • Year to date:
    • Site-wide: 8,823
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    • Site-wide: 4,847

KRAB Zinc Finger Proteins coordinate across evolutionary time scales to battle retroelements

evolutionary biology more details view paper
  • Downloaded 703 times
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    • Site-wide: 47,464
    • In evolutionary biology: 2,215
  • Year to date:
    • Site-wide: 90,486
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    • Site-wide: 86,367

ProTECT: Prediction of T-cell Epitopes for Cancer Therapy

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  • Downloaded 615 times
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    • Site-wide: 56,839
    • In bioinformatics: 5,634
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    • Site-wide: 147,608
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Pandemic-Scale Phylogenomics Reveals Elevated Recombination Rates in the SARS-CoV-2 Spike Region

evolutionary biology more details view paper
  • Downloaded 555 times
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    • Site-wide: 64,642
    • In evolutionary biology: 3,192
  • Year to date:
    • Site-wide: 13,515
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    • Site-wide: 6,104

The case for using Mapped Exonic Non-Duplicate (MEND) read counts in RNA-Seq experiments: examples from pediatric cancer datasets

genomics more details view paper
  • Downloaded 521 times
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    • Site-wide: 69,651
    • In genomics: 4,817
  • Year to date:
    • Site-wide: 75,976
  • Since beginning of last month:
    • Site-wide: 60,072

Light-weight Electrophysiology Hardware and Software Platform for Cloud-Based Neural Recording Experiments

bioengineering more details view paper
  • Downloaded 500 times
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    • Site-wide: 73,010
    • In bioengineering: 1,397
  • Year to date:
    • Site-wide: 15,869
  • Since beginning of last month:
    • Site-wide: 9,141

A daily-updated database and tools for comprehensive SARS-CoV-2 mutation-annotated trees

bioinformatics more details view paper
  • Downloaded 453 times
  • Download rankings, all-time:
    • Site-wide: 81,505
    • In bioinformatics: 7,380
  • Year to date:
    • Site-wide: 18,489
  • Since beginning of last month:
    • Site-wide: 32,864

Internet of Things Architecture for High Throughput Biology

bioengineering more details view paper
  • Downloaded 366 times
  • Download rankings, all-time:
    • Site-wide: 100,092
    • In bioengineering: 1,953
  • Year to date:
    • Site-wide: 25,720
  • Since beginning of last month:
    • Site-wide: 21,983

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