Author: David Hausler

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Preprints

Genome Graphs

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Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit

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Rapid and efficient analysis of 20,000 RNA-seq samples with Toil

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Alignathon: A competitive assessment of whole genome alignment methods.

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Linear Assembly of a Human Y Centromere

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Towards complete and error-free genome assemblies of all vertebrate species

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A user’s guide to the online resources for data exploration, visualization, and discovery for the Pan-Cancer Analysis of Whole Genomes project (PCAWG)

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Comparative Annotation Toolkit (CAT) - simultaneous clade and personal genome annotation

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Genomic profiling of childhood tumor patient-derived xenograft models to enable rational clinical trial design

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The UCSC Genome Browser database: 2016 update

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The UCSC Repeat Browser allows discovery and visualization of evolutionary conflict across repeat families

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The UCSC SARS-CoV-2 Genome Browser

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A Flow Procedure for the Linearization of Genome Sequence Graphs.

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Structurally conserved primate lncRNAs are transiently expressed during human cortical differentiation and influence cell type specific genes

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Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic structural variant detection

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KRAB Zinc Finger Proteins coordinate across evolutionary time scales to battle retroelements

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Framework for determining accuracy of RNA sequencing data for gene expression profiling of single samples

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