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Author: Franziska Singer

Rankings

  • All-time downloads: 30,288 (rank: 6,042 )
  • Categories:
    • bioinformatics: 7,269 (rank: 1,544 )
    • cancer biology: 12,180 (rank: 174 )
    • cell biology: 1,158 (rank: 7,922 (tie) )
    • epidemiology: 976 (rank: 10,983 (tie) )
    • evolutionary biology: 1,609 (rank: 3,923 (tie) )
    • genomics: 1,446 (rank: 17,411 (tie) )
    • hiv aids: 444 (rank: 287 (tie) )
    • microbiology: 1,733 (rank: 9,482 (tie) )
    • oncology: 2,708 (rank: 96 (tie) )
    • systems biology: 765 (rank: 6,249 (tie) )

Downloads per author, site-wide

Preprints

Clonal Evolution of Acute Myeloid Leukemia Revealed by High-Throughput Single-Cell Genomics

cancer biology more details view paper
  • Downloaded 3,196 times
  • Download rankings, all-time:
    • Site-wide: 4,446
    • In cancer biology: 62
  • Year to date:
    • Site-wide: 22,247
  • Since beginning of last month:
    • Site-wide: 34,862

The Tumor Profiler Study: Integrated, multi-omic, functional tumor profiling for clinical decision support

oncology more details view paper
  • Downloaded 2,708 times
  • Download rankings, all-time:
    • Site-wide: 5,589
    • In oncology: 6
  • Year to date:
    • Site-wide: 4,422
  • Since beginning of last month:
    • Site-wide: 19,541

ModulOmics: Integrating Multi-Omics Data to Identify Cancer Driver Modules

cancer biology more details view paper
  • Downloaded 2,112 times
  • Download rankings, all-time:
    • Site-wide: 8,082
    • In cancer biology: 131
  • Year to date:
    • Site-wide: 88,809
  • Since beginning of last month:
    • Site-wide: 50,254

Spatial structure governs the mode of tumour evolution

cancer biology more details view paper
  • Downloaded 2,051 times
  • Download rankings, all-time:
    • Site-wide: 8,393
    • In cancer biology: 140
  • Year to date:
    • Site-wide: 17,040
  • Since beginning of last month:
    • Site-wide: 53,481

High-dimensional microbiome interactions shape host fitness

microbiology more details view paper
  • Downloaded 1,733 times
  • Download rankings, all-time:
    • Site-wide: 10,808
    • In microbiology: 639
  • Year to date:
    • Site-wide: 62,860
  • Since beginning of last month:
    • Site-wide: 108,936

Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data

bioinformatics more details view paper
  • Downloaded 1,276 times
  • Download rankings, all-time:
    • Site-wide: 17,066
    • In bioinformatics: 1,992
  • Year to date:
    • Site-wide: 138,464
  • Since beginning of last month:
    • Site-wide: 32,143

Single-cell copy number calling and event history reconstruction

cancer biology more details view paper
  • Downloaded 1,206 times
  • Download rankings, all-time:
    • Site-wide: 18,535
    • In cancer biology: 419
  • Year to date:
    • Site-wide: 9,789
  • Since beginning of last month:
    • Site-wide: 17,706

Context-dependent deposition and regulation of mRNAs in P-bodies

cell biology more details view paper
  • Downloaded 1,158 times
  • Download rankings, all-time:
    • Site-wide: 19,699
    • In cell biology: 633
  • Year to date:
    • Site-wide: 100,930
  • Since beginning of last month:
    • Site-wide: None

A statistical test on single-cell data reveals widespread recurrent mutations in tumor evolution

cancer biology more details view paper
  • Downloaded 1,102 times
  • Download rankings, all-time:
    • Site-wide: 21,170
    • In cancer biology: 493
  • Year to date:
    • Site-wide: 133,869
  • Since beginning of last month:
    • Site-wide: 50,341

SCIΦ: Single-cell mutation identification via phylogenetic inference

bioinformatics more details view paper
  • Downloaded 1,056 times
  • Download rankings, all-time:
    • Site-wide: 22,563
    • In bioinformatics: 2,604
  • Year to date:
    • Site-wide: 116,125
  • Since beginning of last month:
    • Site-wide: 11,223

V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput sequencing data

bioinformatics more details view paper
  • Downloaded 1,029 times
  • Download rankings, all-time:
    • Site-wide: 23,395
    • In bioinformatics: 2,700
  • Year to date:
    • Site-wide: 8,881
  • Since beginning of last month:
    • Site-wide: 71,783

Quantifying SARS-CoV-2 spread in Switzerland based on genomic sequencing data

epidemiology more details view paper
  • Downloaded 976 times
  • Download rankings, all-time:
    • Site-wide: 25,293
    • In epidemiology: 1,455
  • Year to date:
    • Site-wide: 20,940
  • Since beginning of last month:
    • Site-wide: 44,808

Bayesian non-parametric clustering of single-cell mutation profiles

bioinformatics more details view paper
  • Downloaded 975 times
  • Download rankings, all-time:
    • Site-wide: 25,351
    • In bioinformatics: 2,903
  • Year to date:
    • Site-wide: 58,500
  • Since beginning of last month:
    • Site-wide: 104,439

Within-patient genetic diversity of SARS-CoV-2

genomics more details view paper
  • Downloaded 931 times
  • Download rankings, all-time:
    • Site-wide: 27,081
    • In genomics: 2,470
  • Year to date:
    • Site-wide: 11,449
  • Since beginning of last month:
    • Site-wide: 69,926

Inferring Genetic Interactions From Comparative Fitness Data

evolutionary biology more details view paper
  • Downloaded 785 times
  • Download rankings, all-time:
    • Site-wide: 34,448
    • In evolutionary biology: 1,583
  • Year to date:
    • Site-wide: 103,149
  • Since beginning of last month:
    • Site-wide: None

Mutational interactions define novel cancer subgroups

cancer biology more details view paper
  • Downloaded 781 times
  • Download rankings, all-time:
    • Site-wide: 34,667
    • In cancer biology: 921
  • Year to date:
    • Site-wide: 139,055
  • Since beginning of last month:
    • Site-wide: 99,333

Single cell network analysis with a mixture of Nested Effects Models

systems biology more details view paper
  • Downloaded 765 times
  • Download rankings, all-time:
    • Site-wide: 35,701
    • In systems biology: 759
  • Year to date:
    • Site-wide: 118,774
  • Since beginning of last month:
    • Site-wide: 89,992

Tree inference for single-cell data

cancer biology more details view paper
  • Downloaded 716 times
  • Download rankings, all-time:
    • Site-wide: 39,111
    • In cancer biology: 1,053
  • Year to date:
    • Site-wide: 133,771
  • Since beginning of last month:
    • Site-wide: None

Structured hierarchical models for probabilistic inference from perturbation screening data

bioinformatics more details view paper
  • Downloaded 570 times
  • Download rankings, all-time:
    • Site-wide: 52,377
    • In bioinformatics: 5,355
  • Year to date:
    • Site-wide: 52,425
  • Since beginning of last month:
    • Site-wide: 56,264

Discovery of synthetic lethal interactions from large-scale pan-cancer perturbation screens

bioinformatics more details view paper
  • Downloaded 567 times
  • Download rankings, all-time:
    • Site-wide: 52,721
    • In bioinformatics: 5,394
  • Year to date:
    • Site-wide: 65,839
  • Since beginning of last month:
    • Site-wide: 98,547

GATA3 and MDM2 are synthetic lethal in estrogen receptor-positive breast cancers

cancer biology more details view paper
  • Downloaded 554 times
  • Download rankings, all-time:
    • Site-wide: 54,203
    • In cancer biology: 1,526
  • Year to date:
    • Site-wide: 36,537
  • Since beginning of last month:
    • Site-wide: 58,847

Systematic Identification of Novel Cancer Genes through Analysis of Deep shRNA Perturbation Screens

genomics more details view paper
  • Downloaded 515 times
  • Download rankings, all-time:
    • Site-wide: 59,109
    • In genomics: 4,345
  • Year to date:
    • Site-wide: 66,991
  • Since beginning of last month:
    • Site-wide: 37,156

The geometry of partial fitness orders and an efficient method for detecting genetic interactions

evolutionary biology more details view paper
  • Downloaded 508 times
  • Download rankings, all-time:
    • Site-wide: 60,047
    • In evolutionary biology: 3,115
  • Year to date:
    • Site-wide: 130,273
  • Since beginning of last month:
    • Site-wide: 94,775

Host genomics of the HIV-1 reservoir size and its decay rate during suppressive antiretroviral treatment

hiv aids more details view paper
  • Downloaded 444 times
  • Download rankings, all-time:
    • Site-wide: 69,438
    • In hiv aids: 31
  • Year to date:
    • Site-wide: 79,092
  • Since beginning of last month:
    • Site-wide: 76,993

Latent epistatic interaction model identifies loci associated with human working memory

bioinformatics more details view paper
  • Downloaded 412 times
  • Download rankings, all-time:
    • Site-wide: 74,869
    • In bioinformatics: 7,044
  • Year to date:
    • Site-wide: 129,087
  • Since beginning of last month:
    • Site-wide: 22,428

scAmpi - A versatile pipeline for single-cell RNA-seq analysis from basics to clinics

bioinformatics more details view paper
  • Downloaded 351 times
  • Download rankings, all-time:
    • Site-wide: 86,584
    • In bioinformatics: 7,807
  • Year to date:
    • Site-wide: 14,216
  • Since beginning of last month:
    • Site-wide: 39,864

The Bourque Distances for Mutation Trees of Cancers

bioinformatics more details view paper
  • Downloaded 347 times
  • Download rankings, all-time:
    • Site-wide: 87,222
    • In bioinformatics: 7,861
  • Year to date:
    • Site-wide: 68,932
  • Since beginning of last month:
    • Site-wide: None

A stochastic model of metastatic bottleneck predicts patient outcome and therapy response

cancer biology more details view paper
  • Downloaded 345 times
  • Download rankings, all-time:
    • Site-wide: 87,771
    • In cancer biology: 2,612
  • Year to date:
    • Site-wide: 148,899
  • Since beginning of last month:
    • Site-wide: 50,228

Improved pathway reconstruction from RNA interference screens by exploiting off-target effects

bioinformatics more details view paper
  • Downloaded 316 times
  • Download rankings, all-time:
    • Site-wide: 93,967
    • In bioinformatics: 8,287
  • Year to date:
    • Site-wide: 145,783
  • Since beginning of last month:
    • Site-wide: 47,943

Drug-induced resistance evolution necessitates less aggressive treatment

evolutionary biology more details view paper
  • Downloaded 224 times
  • Download rankings, all-time:
    • Site-wide: 116,137
    • In evolutionary biology: 5,873
  • Year to date:
    • Site-wide: 59,473
  • Since beginning of last month:
    • Site-wide: 71,046

Inferring perturbation profiles of cancer samples

bioinformatics more details view paper
  • Downloaded 189 times
  • Download rankings, all-time:
    • Site-wide: 124,742
    • In bioinformatics: 10,096
  • Year to date:
    • Site-wide: 80,754
  • Since beginning of last month:
    • Site-wide: 25,791

Learning epistatic gene interactions from perturbation screens

bioinformatics more details view paper
  • Downloaded 181 times
  • Download rankings, all-time:
    • Site-wide: 126,675
    • In bioinformatics: 10,200
  • Year to date:
    • Site-wide: 95,664
  • Since beginning of last month:
    • Site-wide: None

Dynamic changes of genomic and transcriptomic tumor diversity during melanoma progression

cancer biology more details view paper
  • Downloaded 117 times
  • Download rankings, all-time:
    • Site-wide: 140,668
    • In cancer biology: 4,337
  • Year to date:
    • Site-wide: 54,796
  • Since beginning of last month:
    • Site-wide: 83,878

Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C

evolutionary biology more details view paper
  • Downloaded 92 times
  • Download rankings, all-time:
    • Site-wide: 145,139
    • In evolutionary biology: 7,010
  • Year to date:
    • Site-wide: 131,036
  • Since beginning of last month:
    • Site-wide: 61,732

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