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Author: Ivo Glynne Gut

Rankings

  • All-time downloads: 59,406 (rank: 4,155 )
  • Categories:
    • bioinformatics: 2,617 (rank: 7,819 (tie) )
    • cancer biology: 9,966 (rank: 294 )
    • cell biology: 184 (rank: 51,687 (tie) )
    • developmental biology: 1,176 (rank: 5,814 (tie) )
    • evolutionary biology: 3,040 (rank: 2,305 )
    • genetics: 1,470 (rank: 15,139 (tie) )
    • genomics: 36,507 (rank: 368 )
    • immunology: 2,587 (rank: 6,763 (tie) )
    • molecular biology: 136 (rank: 37,831 (tie) )

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Preprints

Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

genomics more details view paper
  • Downloaded 14,096 times
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    • Site-wide: 871
    • In genomics: 44
  • Year to date:
    • Site-wide: 7,209
  • Since beginning of last month:
    • Site-wide: 10,323

A Single-Cell Tumor Immune Atlas for Precision Oncology

cancer biology more details view paper
  • Downloaded 9,047 times
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    • Site-wide: 1,535
    • In cancer biology: 11
  • Year to date:
    • Site-wide: 9,496
  • Since beginning of last month:
    • Site-wide: 18,716

An Atlas of Cells in the Human Tonsil

immunology more details view paper
  • Downloaded 2,696 times
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    • Site-wide: 8,284
    • In immunology: 469
  • Year to date:
    • Site-wide: 742
  • Since beginning of last month:
    • Site-wide: 813

GEMBS — high through-put processing for DNA methylation data from Whole Genome Bisulfite Sequencing (WGBS)

bioinformatics more details view paper
  • Downloaded 2,684 times
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    • Site-wide: 8,344
    • In bioinformatics: 832
  • Year to date:
    • Site-wide: 34,086
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    • Site-wide: 55,201

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,482 times
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    • Site-wide: 9,373
    • In genomics: 861
  • Year to date:
    • Site-wide: 199,583
  • Since beginning of last month:
    • Site-wide: 198,687

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

genomics more details view paper
  • Downloaded 2,304 times
  • Download rankings, all-time:
    • Site-wide: 10,489
    • In genomics: 952
  • Year to date:
    • Site-wide: 153,209
  • Since beginning of last month:
    • Site-wide: 125,020

pheno-seq - linking morphological features to gene expression in 3D cell culture systems

genomics more details view paper
  • Downloaded 2,071 times
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    • Site-wide: 12,337
    • In genomics: 1,095
  • Year to date:
    • Site-wide: 80,530
  • Since beginning of last month:
    • Site-wide: None

Tracking of antibiotic resistance transfer and rapid plasmid evolution in a hospital setting by Nanopore sequencing

genomics more details view paper
  • Downloaded 1,930 times
  • Download rankings, all-time:
    • Site-wide: 13,729
    • In genomics: 1,220
  • Year to date:
    • Site-wide: 156,247
  • Since beginning of last month:
    • Site-wide: 80,623

Comparative analysis of neutrophil and monocyte epigenomes

genomics more details view paper
  • Downloaded 1,811 times
  • Download rankings, all-time:
    • Site-wide: 15,124
    • In genomics: 1,349
  • Year to date:
    • Site-wide: 104,389
  • Since beginning of last month:
    • Site-wide: 130,744

Selective single molecule sequencing and assembly of a human Y chromosome of African origin

genomics more details view paper
  • Downloaded 1,772 times
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    • Site-wide: 15,651
    • In genomics: 1,385
  • Year to date:
    • Site-wide: 170,039
  • Since beginning of last month:
    • Site-wide: 124,367

bigSCale: An Analytical Framework for Big-Scale Single-Cell Data

genomics more details view paper
  • Downloaded 1,724 times
  • Download rankings, all-time:
    • Site-wide: 16,289
    • In genomics: 1,437
  • Year to date:
    • Site-wide: 160,817
  • Since beginning of last month:
    • Site-wide: 91,037

Population genomics of Saccharomyces cerevisiae human isolates: passengers, colonizers, invaders.

evolutionary biology more details view paper
  • Downloaded 1,594 times
  • Download rankings, all-time:
    • Site-wide: 18,428
    • In evolutionary biology: 526
  • Year to date:
    • Site-wide: 166,879
  • Since beginning of last month:
    • Site-wide: 171,297

Dynamics of genome architecture and chromatin function during human B cell differentiation and neoplastic transformation

genomics more details view paper
  • Downloaded 1,575 times
  • Download rankings, all-time:
    • Site-wide: 18,771
    • In genomics: 1,638
  • Year to date:
    • Site-wide: 191,554
  • Since beginning of last month:
    • Site-wide: 172,548

Single Cell Transcriptome Conservation in Cryopreserved Cells and Tissues

genomics more details view paper
  • Downloaded 1,557 times
  • Download rankings, all-time:
    • Site-wide: 19,102
    • In genomics: 1,672
  • Year to date:
    • Site-wide: 187,085
  • Since beginning of last month:
    • Site-wide: 125,256

Massive gene presence/absence variation in the mussel genome as an adaptive strategy: first evidence of a pan-genome in Metazoa

genetics more details view paper
  • Downloaded 1,505 times
  • Download rankings, all-time:
    • Site-wide: 20,191
    • In genetics: 813
  • Year to date:
    • Site-wide: 106,649
  • Since beginning of last month:
    • Site-wide: 59,428

DNA methylation oscillation defines classes of enhancers

genomics more details view paper
  • Downloaded 1,382 times
  • Download rankings, all-time:
    • Site-wide: 23,122
    • In genomics: 1,978
  • Year to date:
    • Site-wide: 109,282
  • Since beginning of last month:
    • Site-wide: 45,266

Single cell expression analysis uncouples transdifferentiation and reprogramming

developmental biology more details view paper
  • Downloaded 1,197 times
  • Download rankings, all-time:
    • Site-wide: 29,022
    • In developmental biology: 507
  • Year to date:
    • Site-wide: 122,310
  • Since beginning of last month:
    • Site-wide: 129,098

Framework For Quality Assessment Of Whole Genome, Cancer Sequences

genomics more details view paper
  • Downloaded 1,181 times
  • Download rankings, all-time:
    • Site-wide: 29,637
    • In genomics: 2,433
  • Year to date:
    • Site-wide: 153,937
  • Since beginning of last month:
    • Site-wide: 71,046

Genomic adaptations to aquatic and aerial life in mayflies and the origin of wings in insects

evolutionary biology more details view paper
  • Downloaded 1,024 times
  • Download rankings, all-time:
    • Site-wide: 36,895
    • In evolutionary biology: 1,397
  • Year to date:
    • Site-wide: 171,692
  • Since beginning of last month:
    • Site-wide: 162,913

Partially methylated domains are hypervariable in breast cancer and fuel widespread CpG island hypermethylation

cancer biology more details view paper
  • Downloaded 1,019 times
  • Download rankings, all-time:
    • Site-wide: 37,198
    • In cancer biology: 966
  • Year to date:
    • Site-wide: 159,536
  • Since beginning of last month:
    • Site-wide: 166,982

An Approximate Bayesian Computation Approach to Examining the Phylogenetic Relationships among the Four Gibbon Genera using Whole Genome Sequence Data

genomics more details view paper
  • Downloaded 992 times
  • Download rankings, all-time:
    • Site-wide: 38,737
    • In genomics: 2,954
  • Year to date:
    • Site-wide: 181,195
  • Since beginning of last month:
    • Site-wide: 168,087

Novel method for multiplexed full-length single-molecule sequencing of the human mitochondrial genome

genomics more details view paper
  • Downloaded 802 times
  • Download rankings, all-time:
    • Site-wide: 53,551
    • In genomics: 4,093
  • Year to date:
    • Site-wide: 4,847
  • Since beginning of last month:
    • Site-wide: 28,669

Epigenomic and functional dynamics of human bone marrow myeloid differentiation to mature blood neutrophils

immunology more details view paper
  • Downloaded 627 times
  • Download rankings, all-time:
    • Site-wide: 75,868
    • In immunology: 2,358
  • Year to date:
    • Site-wide: 199,841
  • Since beginning of last month:
    • Site-wide: 149,058

Transposons played a major role in the diversification between the closely related almond (Prunus dulcis) and peach (P. persica) genomes: Results from the almond genome sequence

genomics more details view paper
  • Downloaded 614 times
  • Download rankings, all-time:
    • Site-wide: 77,918
    • In genomics: 5,039
  • Year to date:
    • Site-wide: 166,195
  • Since beginning of last month:
    • Site-wide: 123,243

Genomic evidence for recurrent genetic admixture during domestication mediterranean olive trees (Olea europaea).

evolutionary biology more details view paper
  • Downloaded 476 times
  • Download rankings, all-time:
    • Site-wide: 105,559
    • In evolutionary biology: 4,763
  • Year to date:
    • Site-wide: 185,672
  • Since beginning of last month:
    • Site-wide: 201,700

The genome sequence of the octocoral Paramuricea clavata – a key resource to study the impact of climate change in the Mediterranean

genomics more details view paper
  • Downloaded 427 times
  • Download rankings, all-time:
    • Site-wide: 117,631
    • In genomics: 6,584
  • Year to date:
    • Site-wide: 205,527
  • Since beginning of last month:
    • Site-wide: 164,248

The ulcerative colitis associated gene FUT8 regulates the quantity and quality of secreted mucins

cell biology more details view paper
  • Downloaded 350 times
  • Download rankings, all-time:
    • Site-wide: 139,363
    • In cell biology: 8,161
  • Year to date:
    • Site-wide: 32,328
  • Since beginning of last month:
    • Site-wide: 2,894

De novo assembly and annotation of the larval transcriptome of two spadefoot toads widely divergent in developmental rate

genomics more details view paper
  • Downloaded 320 times
  • Download rankings, all-time:
    • Site-wide: 148,209
    • In genomics: 7,603
  • Year to date:
    • Site-wide: 200,018
  • Since beginning of last month:
    • Site-wide: 150,138

DNA methylation in human gastric epithelial cells allows cell type-related plasticity and defines regional identity

molecular biology more details view paper
  • Downloaded 147 times
  • Download rankings, all-time:
    • Site-wide: 192,726
    • In molecular biology: 5,609
  • Year to date:
    • Site-wide: 65,316
  • Since beginning of last month:
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