Author: Daniel E. Neafsey

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Preprints

Improved Aedes aegypti mosquito reference genome assembly enables biological discovery and vector control

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Genomic architecture and introgression shape a butterfly radiation

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  • In evolutionary biology: 131
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Estimating the probable cause of recurrence in Plasmodium vivax malaria: relapse, reinfection or recrudescence?

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  • In epidemiology: 960
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hmmIBD: software to infer pairwise identity by descent between haploid genotypes

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  • In bioinformatics: 2,789
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Design and implementation of multiplexed amplicon sequencing panels to serve genomic epidemiology of infectious disease: a malaria case study

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  • In infectious diseases: 3,650
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Estimating relatedness between malaria parasites

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  • In genetics: 2,090
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Detection of low-density Plasmodium falciparum infections using amplicon deep sequencing

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  • In microbiology: 4,717
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Plasmodium falciparum population genetic complexity influences transcriptional profile and immune recognition of highly related genotypic clusters

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  • In microbiology: 5,644
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Longitudinal genomic surveillance of Plasmodium falciparum malaria parasites reveals complex genomic architecture of emerging artemisinin resistance in western Thailand

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A population genomic unveiling of a new cryptic mosquito taxon within the malaria-transmitting Anopheles gambiae complex

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  • In evolutionary biology: 4,355
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Resolving drug selection and migration in an inbred South American Plasmodium falciparum population with identity-by-descent analysis

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  • In evolutionary biology: 4,904
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Within-infection diversity of Plasmodium falciparum antigens reflects host-mediated selection

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  • In evolutionary biology: 5,301
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Identity-by-descent relatedness estimates with uncertainty characterise departure from isolation-by-distance between Plasmodium falciparum populations on the Colombian-Pacific coast

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  • In genetics: 4,374
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De Novo Mutations Resolve Disease Transmission Pathways in Clonal Malaria

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Integration of whole genome sequencing and transcriptomics reveals a complex picture of insecticide resistance in the major malaria vector Anopheles coluzzii

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  • In genomics: 7,660
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Breadth of humoral immune responses to the C-terminus of the circumsporozoite protein is associated with protective efficacy inducedby the RTS,S malaria vaccine

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  • In infectious diseases: 7,503
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Population Genomics of Plasmodium vivax in Panama to Assess the Risk of Case Importation on Malaria Elimination

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  • In microbiology: 12,882
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