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Author: William Hanage

Rankings

  • All-time downloads: 216,877 (rank: 448 )
  • Categories:
    • bioinformatics: 7,544 (rank: 1,646 )
    • epidemiology: 32,862 (rank: 709 )
    • evolutionary biology: 4,080 (rank: 1,089 )
    • genetics: 777 (rank: 22,343 (tie) )
    • genomics: 1,435 (rank: 19,547 (tie) )
    • infectious diseases: 168,471 (rank: 212 )
    • microbiology: 1,708 (rank: 11,249 (tie) )

Downloads per author, site-wide

Preprints

Characterizing features of outbreak duration for novel SARS-CoV-2 variants of concern

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ASSESSING THE AGE SPECIFICITY OF INFECTION FATALITY RATES FOR COVID-19: META-ANALYSIS & PUBLIC POLICY IMPLICATIONS

infectious diseases more details view paper
  • Downloaded 149,206 times
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    • Site-wide: 35
    • In infectious diseases: 14
  • Year to date:
    • Site-wide: 675
  • Since beginning of last month:
    • Site-wide: 268

Phylogenetic analysis of SARS-CoV-2 in the Boston area highlights the role of recurrent importation and superspreading events

epidemiology more details view paper
  • Downloaded 19,010 times
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    • Site-wide: 520
    • In epidemiology: 86
  • Year to date:
    • Site-wide: 2,900
  • Since beginning of last month:
    • Site-wide: 7,785

SARS-CoV-2 titers in wastewater foreshadow dynamics and clinical presentation of new COVID-19 cases

infectious diseases more details view paper
  • Downloaded 7,945 times
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    • Site-wide: 1,542
    • In infectious diseases: 462
  • Year to date:
    • Site-wide: 2,972
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    • Site-wide: 3,333

The effect of human mobility and control measures on the COVID-19 epidemic in China

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  • Downloaded 5,957 times
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    • Site-wide: 2,237
    • In epidemiology: 271
  • Year to date:
    • Site-wide: 15,635
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    • Site-wide: 18,928

Rapid heuristic inference of antibiotic resistance and susceptibility by genomic neighbor typing

bioinformatics more details view paper
  • Downloaded 5,582 times
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    • Site-wide: 2,431
    • In bioinformatics: 171
  • Year to date:
    • Site-wide: 150,323
  • Since beginning of last month:
    • Site-wide: 97,157

Evidence of transmission from fully vaccinated individuals in a large outbreak of the SARS-CoV-2 Delta variant in Provincetown, Massachusetts

infectious diseases more details view paper
  • Downloaded 4,997 times
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    • Site-wide: 2,846
    • In infectious diseases: 716
  • Year to date:
    • Site-wide: 1,570
  • Since beginning of last month:
    • Site-wide: 223

COVID-19 vaccine impact on rates of SARS-CoV-2 cases and post vaccination strain sequences among healthcare workers at an urban academic medical center: a prospective cohort study

infectious diseases more details view paper
  • Downloaded 2,270 times
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    • Site-wide: 8,688
    • In infectious diseases: 1,411
  • Year to date:
    • Site-wide: 5,216
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    • Site-wide: 3,936

Population impact of SARS-CoV-2 variants with enhanced transmissibility and/or partial immune escape

epidemiology more details view paper
  • Downloaded 2,157 times
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    • Site-wide: 9,326
    • In epidemiology: 766
  • Year to date:
    • Site-wide: 17,597
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    • Site-wide: 7,378

Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification

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  • Downloaded 2,103 times
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    • Site-wide: 9,650
    • In epidemiology: 784
  • Year to date:
    • Site-wide: 1,520
  • Since beginning of last month:
    • Site-wide: 2,624

Efficient inference of recent and ancestral recombination within bacterial populations

bioinformatics more details view paper
  • Downloaded 1,962 times
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    • Site-wide: 10,728
    • In bioinformatics: 1,195
  • Year to date:
    • Site-wide: 99,351
  • Since beginning of last month:
    • Site-wide: 100,067

The risk of SARS-CoV-2 transmission in the healthcare setting and potential impact of cohorting strategies

infectious diseases more details view paper
  • Downloaded 1,704 times
  • Download rankings, all-time:
    • Site-wide: 13,257
    • In infectious diseases: 1,760
  • Year to date:
    • Site-wide: 64,010
  • Since beginning of last month:
    • Site-wide: 44,801

Predicting evolution using frequency-dependent selection in bacterial populations

evolutionary biology more details view paper
  • Downloaded 1,349 times
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    • Site-wide: 18,910
    • In evolutionary biology: 632
  • Year to date:
    • Site-wide: 73,069
  • Since beginning of last month:
    • Site-wide: 62,110

Choosing Your Battles: Which Resistance Genes Warrant Global Action?

microbiology more details view paper
  • Downloaded 1,294 times
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    • Site-wide: 20,114
    • In microbiology: 1,166
  • Year to date:
    • Site-wide: 57,424
  • Since beginning of last month:
    • Site-wide: 134,880

Wastewater Surveillance of SARS-CoV-2 across 40 U.S. states

infectious diseases more details view paper
  • Downloaded 1,259 times
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    • Site-wide: 20,953
    • In infectious diseases: 2,215
  • Year to date:
    • Site-wide: 14,704
  • Since beginning of last month:
    • Site-wide: 23,763

Fine-scale haplotype structure reveals strong signatures of positive selection in a recombining bacterial pathogen

evolutionary biology more details view paper
  • Downloaded 814 times
  • Download rankings, all-time:
    • Site-wide: 40,136
    • In evolutionary biology: 1,755
  • Year to date:
    • Site-wide: 137,177
  • Since beginning of last month:
    • Site-wide: 120,436

Metrics to relate COVID-19 wastewater data to clinical testing dynamics

infectious diseases more details view paper
  • Downloaded 782 times
  • Download rankings, all-time:
    • Site-wide: 42,561
    • In infectious diseases: 3,203
  • Year to date:
    • Site-wide: 10,251
  • Since beginning of last month:
    • Site-wide: 20,477

The impact of host metapopulation structure on the population genetics of colonizing bacteria

genetics more details view paper
  • Downloaded 777 times
  • Download rankings, all-time:
    • Site-wide: 42,893
    • In genetics: 1,821
  • Year to date:
    • Site-wide: 79,820
  • Since beginning of last month:
    • Site-wide: 95,296

Optimal SARS-CoV-2 vaccine allocation using real-time seroprevalence estimates in Rhode Island and Massachusetts

epidemiology more details view paper
  • Downloaded 759 times
  • Download rankings, all-time:
    • Site-wide: 44,452
    • In epidemiology: 2,269
  • Year to date:
    • Site-wide: 15,766
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    • Site-wide: 94,254

Combining genomic and epidemiological data to compare the transmissibility of SARS-CoV-2 lineages

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  • Downloaded 752 times
  • Download rankings, all-time:
    • Site-wide: 44,986
    • In epidemiology: 2,288
  • Year to date:
    • Site-wide: 10,247
  • Since beginning of last month:
    • Site-wide: 16,209

SARS-CoV-2 epidemic after social and economic reopening in three US states reveals shifts in age structure and clinical characteristics

epidemiology more details view paper
  • Downloaded 694 times
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    • Site-wide: 50,347
    • In epidemiology: 2,489
  • Year to date:
    • Site-wide: 25,328
  • Since beginning of last month:
    • Site-wide: 17,261

Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci

evolutionary biology more details view paper
  • Downloaded 617 times
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    • Site-wide: 58,879
    • In evolutionary biology: 2,835
  • Year to date:
    • Site-wide: 58,809
  • Since beginning of last month:
    • Site-wide: 96,523

Previously undetected superspreading of Mycobacterium tuberculosis revealed by deep sequencing

genomics more details view paper
  • Downloaded 592 times
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    • Site-wide: 62,161
    • In genomics: 4,433
  • Year to date:
    • Site-wide: 110,439
  • Since beginning of last month:
    • Site-wide: 132,220

The role of interspecies recombinations in the evolution of antibiotic resistant pneumococci

genomics more details view paper
  • Downloaded 589 times
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    • Site-wide: 62,475
    • In genomics: 4,451
  • Year to date:
    • Site-wide: 35,678
  • Since beginning of last month:
    • Site-wide: 54,428

Population genomics of pneumococcal carriage in Massachusetts children following PCV-13 introduction

evolutionary biology more details view paper
  • Downloaded 481 times
  • Download rankings, all-time:
    • Site-wide: 79,374
    • In evolutionary biology: 3,927
  • Year to date:
    • Site-wide: 28,969
  • Since beginning of last month:
    • Site-wide: 156,980

Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in Streptococcus pneumoniae

evolutionary biology more details view paper
  • Downloaded 478 times
  • Download rankings, all-time:
    • Site-wide: 79,898
    • In evolutionary biology: 3,951
  • Year to date:
    • Site-wide: 108,517
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    • Site-wide: 152,584

Leveraging pathogen sequence and contact tracing data to enhance vaccine trials in emerging epidemics

epidemiology more details view paper
  • Downloaded 449 times
  • Download rankings, all-time:
    • Site-wide: 85,665
    • In epidemiology: 3,753
  • Year to date:
    • Site-wide: 67,624
  • Since beginning of last month:
    • Site-wide: 80,194

Speciation trajectories in recombining bacterial species

microbiology more details view paper
  • Downloaded 414 times
  • Download rankings, all-time:
    • Site-wide: 92,788
    • In microbiology: 6,249
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 116,964

Transmission of SARS-CoV-2 before and after symptom onset: impact of nonpharmaceutical interventions in China

epidemiology more details view paper
  • Downloaded 376 times
  • Download rankings, all-time:
    • Site-wide: 101,527
    • In epidemiology: 4,373
  • Year to date:
    • Site-wide: 119,777
  • Since beginning of last month:
    • Site-wide: 141,145

Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structures

evolutionary biology more details view paper
  • Downloaded 341 times
  • Download rankings, all-time:
    • Site-wide: 110,182
    • In evolutionary biology: 5,402
  • Year to date:
    • Site-wide: 124,549
  • Since beginning of last month:
    • Site-wide: 89,326

Using the Association Between Antibiotic Susceptibility and Genetic Relatedness to Rescue Old Drugs for Empiric Use

infectious diseases more details view paper
  • Downloaded 308 times
  • Download rankings, all-time:
    • Site-wide: 118,586
    • In infectious diseases: 5,437
  • Year to date:
    • Site-wide: 90,868
  • Since beginning of last month:
    • Site-wide: 84,194

Genomic Epidemiology of Methicillin-Resistant Staphylococcus aureus in Two Cohorts of High-Risk Military Trainees

epidemiology more details view paper
  • Downloaded 307 times
  • Download rankings, all-time:
    • Site-wide: 118,922
    • In epidemiology: 5,074
  • Year to date:
    • Site-wide: 38,893
  • Since beginning of last month:
    • Site-wide: 44,229

SARS-CoV-2 attack rate and population immunity in southern New England, March 2020 - May 2021

epidemiology more details view paper
  • Downloaded 298 times
  • Download rankings, all-time:
    • Site-wide: 121,368
    • In epidemiology: 5,169
  • Year to date:
    • Site-wide: 11,870
  • Since beginning of last month:
    • Site-wide: 1,226

Early signals of vaccine driven perturbation seen in pneumococcal carriage population genomic data

genomics more details view paper
  • Downloaded 254 times
  • Download rankings, all-time:
    • Site-wide: 133,316
    • In genomics: 7,183
  • Year to date:
    • Site-wide: 147,559
  • Since beginning of last month:
    • Site-wide: 156,020

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