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Author: William P. Hanage

  • ORCiD: http://orcid.org/0000-0002-6319-7336
  • Most recently observed institution: Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, MA

Rankings

  • All-time downloads: 177,263 (rank: 342 )
  • Categories:
    • bioinformatics: 7,302 (rank: 1,225 )
    • epidemiology: 24,313 (rank: 477 )
    • evolutionary biology: 3,672 (rank: 870 )
    • genetics: 708 (rank: 19,694 (tie) )
    • genomics: 725 (rank: 26,707 (tie) )
    • infectious diseases: 139,260 (rank: 120 )
    • microbiology: 1,283 (rank: 9,920 )

Downloads per author, site-wide

Preprints

ASSESSING THE AGE SPECIFICITY OF INFECTION FATALITY RATES FOR COVID-19: META-ANALYSIS & PUBLIC POLICY IMPLICATIONS

infectious diseases more details view paper
  • Downloaded 131,300 times
  • Download rankings, all-time:
    • Site-wide: 27
    • In infectious diseases: 11
  • Year to date:
    • Site-wide: 62
  • Since beginning of last month:
    • Site-wide: 62

Phylogenetic analysis of SARS-CoV-2 in the Boston area highlights the role of recurrent importation and superspreading events

epidemiology more details view paper
  • Downloaded 17,626 times
  • Download rankings, all-time:
    • Site-wide: 364
    • In epidemiology: 60
  • Year to date:
    • Site-wide: 2,239
  • Since beginning of last month:
    • Site-wide: 2,239

SARS-CoV-2 titers in wastewater foreshadow dynamics and clinical presentation of new COVID-19 cases

infectious diseases more details view paper
  • Downloaded 6,283 times
  • Download rankings, all-time:
    • Site-wide: 1,345
    • In infectious diseases: 352
  • Year to date:
    • Site-wide: 1,667
  • Since beginning of last month:
    • Site-wide: 1,667

Rapid heuristic inference of antibiotic resistance and susceptibility by genomic neighbor typing

bioinformatics more details view paper
  • Downloaded 5,459 times
  • Download rankings, all-time:
    • Site-wide: 1,643
    • In bioinformatics: 131
  • Year to date:
    • Site-wide: 31,309
  • Since beginning of last month:
    • Site-wide: 31,309

The effect of human mobility and control measures on the COVID-19 epidemic in China

epidemiology more details view paper
  • Downloaded 5,456 times
  • Download rankings, all-time:
    • Site-wide: 1,646
    • In epidemiology: 190
  • Year to date:
    • Site-wide: 11,549
  • Since beginning of last month:
    • Site-wide: 11,549

Efficient inference of recent and ancestral recombination within bacterial populations

bioinformatics more details view paper
  • Downloaded 1,843 times
  • Download rankings, all-time:
    • Site-wide: 7,796
    • In bioinformatics: 961
  • Year to date:
    • Site-wide: 28,696
  • Since beginning of last month:
    • Site-wide: 28,696

The risk of SARS-CoV-2 transmission in the healthcare setting and potential impact of cohorting strategies

infectious diseases more details view paper
  • Downloaded 1,472 times
  • Download rankings, all-time:
    • Site-wide: 10,920
    • In infectious diseases: 1,202
  • Year to date:
    • Site-wide: 30,890
  • Since beginning of last month:
    • Site-wide: 30,890

Predicting evolution using frequency-dependent selection in bacterial populations

evolutionary biology more details view paper
  • Downloaded 1,210 times
  • Download rankings, all-time:
    • Site-wide: 14,686
    • In evolutionary biology: 580
  • Year to date:
    • Site-wide: 39,637
  • Since beginning of last month:
    • Site-wide: 39,637

Choosing Your Battles: Which Resistance Genes Warrant Global Action?

microbiology more details view paper
  • Downloaded 898 times
  • Download rankings, all-time:
    • Site-wide: 22,807
    • In microbiology: 1,280
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

Fine-scale haplotype structure reveals strong signatures of positive selection in a recombining bacterial pathogen

evolutionary biology more details view paper
  • Downloaded 772 times
  • Download rankings, all-time:
    • Site-wide: 28,150
    • In evolutionary biology: 1,390
  • Year to date:
    • Site-wide: 111,263
  • Since beginning of last month:
    • Site-wide: 111,263

The impact of host metapopulation structure on the population genetics of colonizing bacteria

genetics more details view paper
  • Downloaded 708 times
  • Download rankings, all-time:
    • Site-wide: 31,787
    • In genetics: 1,588
  • Year to date:
    • Site-wide: 65,982
  • Since beginning of last month:
    • Site-wide: 65,982

Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci

evolutionary biology more details view paper
  • Downloaded 565 times
  • Download rankings, all-time:
    • Site-wide: 42,555
    • In evolutionary biology: 2,295
  • Year to date:
    • Site-wide: 66,408
  • Since beginning of last month:
    • Site-wide: 66,408

Previously undetected superspreading of Mycobacterium tuberculosis revealed by deep sequencing

genomics more details view paper
  • Downloaded 499 times
  • Download rankings, all-time:
    • Site-wide: 49,442
    • In genomics: 3,920
  • Year to date:
    • Site-wide: 84,535
  • Since beginning of last month:
    • Site-wide: 84,535

Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in Streptococcus pneumoniae

evolutionary biology more details view paper
  • Downloaded 439 times
  • Download rankings, all-time:
    • Site-wide: 56,932
    • In evolutionary biology: 3,189
  • Year to date:
    • Site-wide: 97,853
  • Since beginning of last month:
    • Site-wide: 97,853

Population genomics of pneumococcal carriage in Massachusetts children following PCV-13 introduction

evolutionary biology more details view paper
  • Downloaded 388 times
  • Download rankings, all-time:
    • Site-wide: 64,357
    • In evolutionary biology: 3,613
  • Year to date:
    • Site-wide: 116,338
  • Since beginning of last month:
    • Site-wide: 116,338

Speciation trajectories in recombining bacterial species

microbiology more details view paper
  • Downloaded 385 times
  • Download rankings, all-time:
    • Site-wide: 64,870
    • In microbiology: 4,355
  • Year to date:
    • Site-wide: 120,777
  • Since beginning of last month:
    • Site-wide: 120,777

Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structures

evolutionary biology more details view paper
  • Downloaded 298 times
  • Download rankings, all-time:
    • Site-wide: 80,483
    • In evolutionary biology: 4,457
  • Year to date:
    • Site-wide: 31,894
  • Since beginning of last month:
    • Site-wide: 31,894

Optimal SARS-CoV-2 vaccine allocation using real-time seroprevalence estimates in Rhode Island and Massachusetts

epidemiology more details view paper
  • Downloaded 282 times
  • Download rankings, all-time:
    • Site-wide: 83,723
    • In epidemiology: 3,420
  • Year to date:
    • Site-wide: 2,430
  • Since beginning of last month:
    • Site-wide: 2,430

SARS-CoV-2 epidemic after social and economic reopening in three US states reveals shifts in age structure and clinical characteristics

epidemiology more details view paper
  • Downloaded 264 times
  • Download rankings, all-time:
    • Site-wide: 87,399
    • In epidemiology: 3,555
  • Year to date:
    • Site-wide: 21,001
  • Since beginning of last month:
    • Site-wide: 21,001

Transmission of SARS-CoV-2 before and after symptom onset: impact of nonpharmaceutical interventions in China

epidemiology more details view paper
  • Downloaded 247 times
  • Download rankings, all-time:
    • Site-wide: 91,110
    • In epidemiology: 3,690
  • Year to date:
    • Site-wide: 18,472
  • Since beginning of last month:
    • Site-wide: 18,472

Leveraging pathogen sequence and contact tracing data to enhance vaccine trials in emerging epidemics

epidemiology more details view paper
  • Downloaded 228 times
  • Download rankings, all-time:
    • Site-wide: 95,317
    • In epidemiology: 3,853
  • Year to date:
    • Site-wide: 54,398
  • Since beginning of last month:
    • Site-wide: 54,398

Early signals of vaccine driven perturbation seen in pneumococcal carriage population genomic data

genomics more details view paper
  • Downloaded 226 times
  • Download rankings, all-time:
    • Site-wide: 95,554
    • In genomics: 5,820
  • Year to date:
    • Site-wide: 117,089
  • Since beginning of last month:
    • Site-wide: 117,089

Genomic Epidemiology of Methicillin-Resistant Staphylococcus aureus in Two Cohorts of High-Risk Military Trainees

epidemiology more details view paper
  • Downloaded 210 times
  • Download rankings, all-time:
    • Site-wide: 99,087
    • In epidemiology: 4,041
  • Year to date:
    • Site-wide: 72,974
  • Since beginning of last month:
    • Site-wide: 72,974

Using the Association Between Antibiotic Susceptibility and Genetic Relatedness to Rescue Old Drugs for Empiric Use

infectious diseases more details view paper
  • Downloaded 205 times
  • Download rankings, all-time:
    • Site-wide: 100,212
    • In infectious diseases: 3,535
  • Year to date:
    • Site-wide: 121,430
  • Since beginning of last month:
    • Site-wide: 121,430

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