Author: William P. Hanage

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Preprints

ASSESSING THE AGE SPECIFICITY OF INFECTION FATALITY RATES FOR COVID-19: META-ANALYSIS & PUBLIC POLICY IMPLICATIONS

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Phylogenetic analysis of SARS-CoV-2 in the Boston area highlights the role of recurrent importation and superspreading events

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  • In epidemiology: 60
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SARS-CoV-2 titers in wastewater foreshadow dynamics and clinical presentation of new COVID-19 cases

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  • In infectious diseases: 352
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Rapid heuristic inference of antibiotic resistance and susceptibility by genomic neighbor typing

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  • In bioinformatics: 131
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The effect of human mobility and control measures on the COVID-19 epidemic in China

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  • Site-wide: 1,646
  • In epidemiology: 190
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Efficient inference of recent and ancestral recombination within bacterial populations

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  • Site-wide: 7,796
  • In bioinformatics: 961
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The risk of SARS-CoV-2 transmission in the healthcare setting and potential impact of cohorting strategies

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  • Site-wide: 10,920
  • In infectious diseases: 1,202
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Predicting evolution using frequency-dependent selection in bacterial populations

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  • Site-wide: 14,686
  • In evolutionary biology: 580
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Choosing Your Battles: Which Resistance Genes Warrant Global Action?

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  • In microbiology: 1,280
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Fine-scale haplotype structure reveals strong signatures of positive selection in a recombining bacterial pathogen

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  • In evolutionary biology: 1,390
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The impact of host metapopulation structure on the population genetics of colonizing bacteria

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  • In genetics: 1,588
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Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci

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  • In evolutionary biology: 2,295
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Previously undetected superspreading of Mycobacterium tuberculosis revealed by deep sequencing

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  • In genomics: 3,920
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Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in Streptococcus pneumoniae

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  • In evolutionary biology: 3,189
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Population genomics of pneumococcal carriage in Massachusetts children following PCV-13 introduction

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  • In evolutionary biology: 3,613
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Speciation trajectories in recombining bacterial species

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  • In microbiology: 4,355
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Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structures

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  • Site-wide: 80,483
  • In evolutionary biology: 4,457
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Optimal SARS-CoV-2 vaccine allocation using real-time seroprevalence estimates in Rhode Island and Massachusetts

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  • Site-wide: 83,723
  • In epidemiology: 3,420
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SARS-CoV-2 epidemic after social and economic reopening in three US states reveals shifts in age structure and clinical characteristics

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  • Site-wide: 87,399
  • In epidemiology: 3,555
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Transmission of SARS-CoV-2 before and after symptom onset: impact of nonpharmaceutical interventions in China

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  • Site-wide: 91,110
  • In epidemiology: 3,690
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  • Site-wide: 18,472
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Leveraging pathogen sequence and contact tracing data to enhance vaccine trials in emerging epidemics

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  • Site-wide: 95,317
  • In epidemiology: 3,853
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Early signals of vaccine driven perturbation seen in pneumococcal carriage population genomic data

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  • In genomics: 5,820
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Genomic Epidemiology of Methicillin-Resistant Staphylococcus aureus in Two Cohorts of High-Risk Military Trainees

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  • In epidemiology: 4,041
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Using the Association Between Antibiotic Susceptibility and Genetic Relatedness to Rescue Old Drugs for Empiric Use

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  • Site-wide: 100,212
  • In infectious diseases: 3,535
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