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Author: Christopher J Mungall

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  • All-time downloads: 14,952 (rank: 13,273 )
  • Categories:
    • bioinformatics: 12,883 (rank: 558 )
    • evolutionary biology: 1,370 (rank: 4,696 )
    • infectious diseases: 699 (rank: 28,175 (tie) )

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Preprints

OBO Foundry in 2021: Operationalizing Open Data Principles to Evaluate Ontologies

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Supervised learning with word embeddings derived from PubMed captures latent knowledge about protein kinases and cancer

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Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

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    • Site-wide: 3,694
    • In bioinformatics: 363
  • Year to date:
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  • Since beginning of last month:
    • Site-wide: 5,817

FALDO: A semantic standard for describing the location of nucleotide and protein feature annotation.

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    • Site-wide: 5,833
    • In bioinformatics: 629
  • Year to date:
    • Site-wide: 55,277
  • Since beginning of last month:
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k-BOOM: A Bayesian approach to ontology structure inference, with applications in disease ontology construction

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  • Downloaded 1,656 times
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    • Site-wide: 10,783
    • In bioinformatics: 1,280
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Use of OWL within the Gene Ontology

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  • Downloaded 1,104 times
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    • In bioinformatics: 2,311
  • Year to date:
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BioMake: a GNU Make-compatible utility for declarative workflow management

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  • Downloaded 877 times
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    • Site-wide: 27,505
    • In bioinformatics: 3,155
  • Year to date:
    • Site-wide: 99,375
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The Monarch Initiative: Insights across species reveal human disease mechanisms

evolutionary biology more details view paper
  • Downloaded 792 times
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    • Site-wide: 31,749
    • In evolutionary biology: 1,490
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    • Site-wide: 72,270
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"Opposite-of"-information improves similarity calculations in phenotype ontologies

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  • Downloaded 789 times
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    • Site-wide: 31,902
    • In bioinformatics: 3,575
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    • Site-wide: 63,464
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Cyclooxygenase inhibitor use is associated with increased COVID-19 severity

infectious diseases more details view paper
  • Downloaded 699 times
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    • Site-wide: 37,757
    • In infectious diseases: 2,500
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WTFgenes: What's The Function of these genes? Static sites for model-based gene set analysis

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  • Downloaded 645 times
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    • In bioinformatics: 4,468
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    • Site-wide: 123,282
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    • Site-wide: 100,167

KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response

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  • Downloaded 594 times
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    • Site-wide: 46,508
    • In bioinformatics: 4,850
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    • Site-wide: 71,869

A logical model of homology for comparative biology

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    • Site-wide: 48,077
    • In evolutionary biology: 2,469
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Investigating the importance of anatomical homology for cross-species phenotype comparisons using semantic similarity.

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    • Site-wide: 53,338
    • In bioinformatics: 5,410
  • Year to date:
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    • Site-wide: 113,931

Formalization of Genome Interval Relations

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  • Downloaded 517 times
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    • Site-wide: 54,994
    • In bioinformatics: 5,564
  • Year to date:
    • Site-wide: 123,137
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Knowledge Beacons: Web Service Workflow for FAIR Data Harvesting of Distributed Biomedical Knowledge

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  • Downloaded 205 times
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    • Site-wide: 113,582
    • In bioinformatics: 9,390
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