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Author: Christopher J Mungall

  • ORCiD: http://orcid.org/0000-0002-6601-2165
  • Most recently observed institution: Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA 94710, USA

Rankings

  • All-time downloads: 24,173 (rank: 12,329 (tie) )
  • Categories:
    • bioinformatics: 17,018 (rank: 529 )
    • evolutionary biology: 1,538 (rank: 6,170 (tie) )
    • genetic and genomic medicine: 1,054 (rank: 6,141 (tie) )
    • health informatics: 590 (rank: 2,544 (tie) )
    • infectious diseases: 1,927 (rank: 24,700 (tie) )
    • neuroscience: 214 (rank: 99,230 (tie) )

Downloads per author, site-wide

Preprints

Node-degree aware edge sampling mitigates inflated classification performance in biomedical graph representation learning

bioinformatics more details view paper

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Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

bioinformatics more details view paper
  • Downloaded 5,425 times
  • Download rankings, all-time:
    • Site-wide: 3,058
    • In bioinformatics: 229
  • Year to date:
    • Site-wide: 3,612
  • Since beginning of last month:
    • Site-wide: 2,751

FALDO: A semantic standard for describing the location of nucleotide and protein feature annotation.

bioinformatics more details view paper
  • Downloaded 2,630 times
  • Download rankings, all-time:
    • Site-wide: 8,617
    • In bioinformatics: 834
  • Year to date:
    • Site-wide: 172,637
  • Since beginning of last month:
    • Site-wide: 154,115

NSAID use and clinical outcomes in COVID-19 patients: A 38-center retrospective cohort study

infectious diseases more details view paper
  • Downloaded 2,067 times
  • Download rankings, all-time:
    • Site-wide: 12,390
    • In infectious diseases: 1,842
  • Year to date:
    • Site-wide: 4,246
  • Since beginning of last month:
    • Site-wide: 10,335

k-BOOM: A Bayesian approach to ontology structure inference, with applications in disease ontology construction

bioinformatics more details view paper
  • Downloaded 2,062 times
  • Download rankings, all-time:
    • Site-wide: 12,419
    • In bioinformatics: 1,310
  • Year to date:
    • Site-wide: 39,783
  • Since beginning of last month:
    • Site-wide: 48,466

Use of OWL within the Gene Ontology

bioinformatics more details view paper
  • Downloaded 1,257 times
  • Download rankings, all-time:
    • Site-wide: 26,968
    • In bioinformatics: 2,819
  • Year to date:
    • Site-wide: 141,066
  • Since beginning of last month:
    • Site-wide: 153,710

The GA4GH Phenopacket schema: A computable representation of clinical data for precision medicine

genetic and genomic medicine more details view paper
  • Downloaded 1,176 times
  • Download rankings, all-time:
    • Site-wide: 29,924
    • In genetic and genomic medicine: 198
  • Year to date:
    • Site-wide: 5,060
  • Since beginning of last month:
    • Site-wide: 9,340

BioMake: a GNU Make-compatible utility for declarative workflow management

bioinformatics more details view paper
  • Downloaded 977 times
  • Download rankings, all-time:
    • Site-wide: 39,803
    • In bioinformatics: 4,081
  • Year to date:
    • Site-wide: 155,178
  • Since beginning of last month:
    • Site-wide: 75,817

"Opposite-of"-information improves similarity calculations in phenotype ontologies

bioinformatics more details view paper
  • Downloaded 948 times
  • Download rankings, all-time:
    • Site-wide: 41,672
    • In bioinformatics: 4,251
  • Year to date:
    • Site-wide: 128,571
  • Since beginning of last month:
    • Site-wide: 53,063

The Monarch Initiative: Insights across species reveal human disease mechanisms

evolutionary biology more details view paper
  • Downloaded 937 times
  • Download rankings, all-time:
    • Site-wide: 42,438
    • In evolutionary biology: 1,663
  • Year to date:
    • Site-wide: 124,034
  • Since beginning of last month:
    • Site-wide: 136,923

KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response

bioinformatics more details view paper
  • Downloaded 792 times
  • Download rankings, all-time:
    • Site-wide: 54,749
    • In bioinformatics: 5,374
  • Year to date:
    • Site-wide: 86,291
  • Since beginning of last month:
    • Site-wide: 54,542

Mondo: Unifying diseases for the world, by the world

health informatics more details view paper
  • Downloaded 748 times
  • Download rankings, all-time:
    • Site-wide: 59,497
    • In health informatics: 339
  • Year to date:
    • Site-wide: 5,508
  • Since beginning of last month:
    • Site-wide: 8,984

WTFgenes: What's The Function of these genes? Static sites for model-based gene set analysis

bioinformatics more details view paper
  • Downloaded 731 times
  • Download rankings, all-time:
    • Site-wide: 61,540
    • In bioinformatics: 5,692
  • Year to date:
    • Site-wide: 198,357
  • Since beginning of last month:
    • Site-wide: 173,944

A logical model of homology for comparative biology

evolutionary biology more details view paper
  • Downloaded 660 times
  • Download rankings, all-time:
    • Site-wide: 71,094
    • In evolutionary biology: 3,200
  • Year to date:
    • Site-wide: 159,288
  • Since beginning of last month:
    • Site-wide: 53,787

Formalization of Genome Interval Relations

bioinformatics more details view paper
  • Downloaded 633 times
  • Download rankings, all-time:
    • Site-wide: 75,196
    • In bioinformatics: 6,741
  • Year to date:
    • Site-wide: 174,605
  • Since beginning of last month:
    • Site-wide: 136,010

Investigating the importance of anatomical homology for cross-species phenotype comparisons using semantic similarity.

bioinformatics more details view paper
  • Downloaded 559 times
  • Download rankings, all-time:
    • Site-wide: 87,856
    • In bioinformatics: 7,437
  • Year to date:
    • Site-wide: 209,850
  • Since beginning of last month:
    • Site-wide: 202,240

SvAnna: efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing

bioinformatics more details view paper
  • Downloaded 554 times
  • Download rankings, all-time:
    • Site-wide: 88,802
    • In bioinformatics: 7,994
  • Year to date:
    • Site-wide: 56,241
  • Since beginning of last month:
    • Site-wide: 57,573

The BRAIN Initiative Cell Census Data Ecosystem: A User's Guide

bioinformatics more details view paper
  • Downloaded 411 times
  • Download rankings, all-time:
    • Site-wide: 122,114
    • In bioinformatics: None
  • Year to date:
    • Site-wide: 15,018
  • Since beginning of last month:
    • Site-wide: 573

Supervised learning with word embeddings derived from PubMed captures latent knowledge about protein kinases and cancer

bioinformatics more details view paper
  • Downloaded 338 times
  • Download rankings, all-time:
    • Site-wide: 143,054
    • In bioinformatics: 10,987
  • Year to date:
    • Site-wide: 151,116
  • Since beginning of last month:
    • Site-wide: 193,003

Unifying the Identification of Biomedical Entities with the Bioregistry

bioinformatics more details view paper
  • Downloaded 330 times
  • Download rankings, all-time:
    • Site-wide: 145,801
    • In bioinformatics: 13,402
  • Year to date:
    • Site-wide: 21,439
  • Since beginning of last month:
    • Site-wide: 9,495

Brain Data Standards - A method for building data-driven cell-type ontologies

neuroscience more details view paper
  • Downloaded 324 times
  • Download rankings, all-time:
    • Site-wide: 147,401
    • In neuroscience: 24,968
  • Year to date:
    • Site-wide: 41,153
  • Since beginning of last month:
    • Site-wide: 22,840

Knowledge Beacons: Web Service Workflow for FAIR Data Harvesting of Distributed Biomedical Knowledge

bioinformatics more details view paper
  • Downloaded 320 times
  • Download rankings, all-time:
    • Site-wide: 148,709
    • In bioinformatics: 11,588
  • Year to date:
    • Site-wide: 164,436
  • Since beginning of last month:
    • Site-wide: 54,015

OBO Foundry in 2021: Operationalizing Open Data Principles to Evaluate Ontologies

bioinformatics more details view paper
  • Downloaded 294 times
  • Download rankings, all-time:
    • Site-wide: 156,371
    • In bioinformatics: 11,912
  • Year to date:
    • Site-wide: 140,025
  • Since beginning of last month:
    • Site-wide: 144,828

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