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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 70,235 bioRxiv papers from 306,680 authors.

Author: Elana J Fertig

Rankings

  • All-time downloads: 22,444 (rank: 1,190 out of 306,693)
  • Categories:
    • bioinformatics: 8,902 (rank: 420 out of 26,739)
    • cancer biology: 3,557 (rank: 404 (tie) out of 19,865)
    • developmental biology: 3,258 (rank: 180 (tie) out of 11,757)
    • genomics: 1,080 (rank: 13,177 (tie) out of 34,697)
    • neuroscience: 1,653 (rank: 6,712 (tie) out of 51,768)
    • systems biology: 3,994 (rank: 317 out of 9,233)

Downloads per author, site-wide

Preprints

Functional normalization of 450k methylation array data improves replication in large cancer studies

bioinformatics more details view paper
  • Downloaded 3,511 times
  • Download rankings, all-time:
    • Site-wide: 926 out of 70,235
    • In bioinformatics: 183 out of 6,887
  • Year to date:
    • Site-wide: 10,954 out of 70,235
  • Since beginning of last month:
    • Site-wide: 8,125 out of 70,235

Comprehensive analysis of retinal development at single cell resolution identifies NFI factors as essential for mitotic exit and specification of late-born cells

developmental biology more details view paper
  • Downloaded 3,258 times
  • Download rankings, all-time:
    • Site-wide: 1,053 out of 70,235
    • In developmental biology: 13 out of 2,102
  • Year to date:
    • Site-wide: 6,152 out of 70,235
  • Since beginning of last month:
    • Site-wide: 6,826 out of 70,235

Enter the matrix: factorization uncovers knowledge from omics

systems biology more details view paper
  • Downloaded 2,878 times
  • Download rankings, all-time:
    • Site-wide: 1,347 out of 70,235
    • In systems biology: 29 out of 1,936
  • Year to date:
    • Site-wide: 13,574 out of 70,235
  • Since beginning of last month:
    • Site-wide: 6,794 out of 70,235

Epigenetic Regulation of Gene Expression in Cancer: Techniques, Resources, and Analysis

cancer biology more details view paper
  • Downloaded 1,805 times
  • Download rankings, all-time:
    • Site-wide: 3,038 out of 70,235
    • In cancer biology: 74 out of 2,389
  • Year to date:
    • Site-wide: 16,301 out of 70,235
  • Since beginning of last month:
    • Site-wide: 2,746 out of 70,235

Decomposing cell identity for transfer learning across cellular measurements, platforms, tissues, and species.

bioinformatics more details view paper
  • Downloaded 1,737 times
  • Download rankings, all-time:
    • Site-wide: 3,238 out of 70,235
    • In bioinformatics: 643 out of 6,887
  • Year to date:
    • Site-wide: 56,899 out of 70,235
  • Since beginning of last month:
    • Site-wide: 19,802 out of 70,235

Integrated time course omics analysis distinguishes immediate therapeutic response from acquired resistance.

cancer biology more details view paper
  • Downloaded 1,333 times
  • Download rankings, all-time:
    • Site-wide: 5,075 out of 70,235
    • In cancer biology: 133 out of 2,389
  • Year to date:
    • Site-wide: 36,586 out of 70,235
  • Since beginning of last month:
    • Site-wide: 38,883 out of 70,235

CancerInSilico: An R/Bioconductor package for combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancer

systems biology more details view paper
  • Downloaded 1,116 times
  • Download rankings, all-time:
    • Site-wide: 6,853 out of 70,235
    • In systems biology: 197 out of 1,936
  • Year to date:
    • Site-wide: 21,896 out of 70,235
  • Since beginning of last month:
    • Site-wide: 16,274 out of 70,235

Splice Expression Variation Analysis (SEVA) for Inter-tumor Heterogeneity of Gene Isoform Usage in Cancer

genomics more details view paper
  • Downloaded 1,080 times
  • Download rankings, all-time:
    • Site-wide: 7,233 out of 70,235
    • In genomics: 1,159 out of 4,700
  • Year to date:
    • Site-wide: 21,131 out of 70,235
  • Since beginning of last month:
    • Site-wide: 34,651 out of 70,235

Single-cell analysis of human retina identifies evolutionarily conserved and species-specific mechanisms controlling development.

neuroscience more details view paper
  • Downloaded 1,066 times
  • Download rankings, all-time:
    • Site-wide: 7,363 out of 70,235
    • In neuroscience: 1,183 out of 12,633
  • Year to date:
    • Site-wide: 2,809 out of 70,235
  • Since beginning of last month:
    • Site-wide: 879 out of 70,235

Expression variation analysis for tumor heterogeneity in single-cell RNA-sequencing data

bioinformatics more details view paper
  • Downloaded 865 times
  • Download rankings, all-time:
    • Site-wide: 10,311 out of 70,235
    • In bioinformatics: 1,767 out of 6,887
  • Year to date:
    • Site-wide: 56,345 out of 70,235
  • Since beginning of last month:
    • Site-wide: 14,522 out of 70,235

StereoGene: Rapid Estimation of Genomewide Correlation of Continuous or Interval Feature Data

bioinformatics more details view paper
  • Downloaded 827 times
  • Download rankings, all-time:
    • Site-wide: 11,086 out of 70,235
    • In bioinformatics: 1,868 out of 6,887
  • Year to date:
    • Site-wide: 17,134 out of 70,235
  • Since beginning of last month:
    • Site-wide: 42,793 out of 70,235

Human cortical neural stem cells generate regional organizer states in vitro before committing to excitatory neuronal fates

neuroscience more details view paper
  • Downloaded 587 times
  • Download rankings, all-time:
    • Site-wide: 18,183 out of 70,235
    • In neuroscience: 3,074 out of 12,633
  • Year to date:
    • Site-wide: 43,710 out of 70,235
  • Since beginning of last month:
    • Site-wide: 22,645 out of 70,235

PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF

bioinformatics more details view paper
  • Downloaded 531 times
  • Download rankings, all-time:
    • Site-wide: 20,755 out of 70,235
    • In bioinformatics: 3,033 out of 6,887
  • Year to date:
    • Site-wide: 25,725 out of 70,235
  • Since beginning of last month:
    • Site-wide: 50,771 out of 70,235

Integrated single cell and bulk multi-omics reveals heterogeneity and early changes in pathways associated with cetuximab resistance in HNSCC sensitive cell lines

cancer biology more details view paper
  • Downloaded 419 times
  • Download rankings, all-time:
    • Site-wide: 27,597 out of 70,235
    • In cancer biology: 854 out of 2,389
  • Year to date:
    • Site-wide: 986 out of 70,235
  • Since beginning of last month:
    • Site-wide: 16,455 out of 70,235

Synthesizer: Expediting synthesis studies from context-free data with natural language processing

bioinformatics more details view paper
  • Downloaded 400 times
  • Download rankings, all-time:
    • Site-wide: 29,044 out of 70,235
    • In bioinformatics: 3,824 out of 6,887
  • Year to date:
    • Site-wide: 44,521 out of 70,235
  • Since beginning of last month:
    • Site-wide: 27,505 out of 70,235

projectR: An R/Bioconductor package for transfer learning via PCA, NMF, correlation, and clustering

bioinformatics more details view paper
  • Downloaded 380 times
  • Download rankings, all-time:
    • Site-wide: 30,678 out of 70,235
    • In bioinformatics: 3,989 out of 6,887
  • Year to date:
    • Site-wide: 67,124 out of 70,235
  • Since beginning of last month:
    • Site-wide: 13,150 out of 70,235

REVA: a rank-based multi-dimensional measure of correlation

bioinformatics more details view paper
  • Downloaded 369 times
  • Download rankings, all-time:
    • Site-wide: 31,674 out of 70,235
    • In bioinformatics: 4,065 out of 6,887
  • Year to date:
    • Site-wide: 42,756 out of 70,235
  • Since beginning of last month:
    • Site-wide: 45,598 out of 70,235

CoGAPS 3: Bayesian non-negative matrix factorization for single-cell analysis with asynchronous updates and sparse data structures

bioinformatics more details view paper
  • Downloaded 282 times
  • Download rankings, all-time:
    • Site-wide: 40,475 out of 70,235
    • In bioinformatics: 4,822 out of 6,887
  • Year to date:
    • Site-wide: 60,498 out of 70,235
  • Since beginning of last month:
    • Site-wide: 15,471 out of 70,235

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