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Author: Elana J. Fertig

Rankings

  • All-time downloads: 27,289 (rank: 1,781 out of 396,022)
  • Categories:
    • bioinformatics: 10,623 (rank: 511 out of 33,607)
    • cancer biology: 4,608 (rank: 444 out of 27,516)
    • developmental biology: 3,641 (rank: 276 (tie) out of 15,375)
    • genomics: 1,177 (rank: 15,522 (tie) out of 42,086)
    • neuroscience: 2,987 (rank: 4,988 (tie) out of 66,138)
    • systems biology: 4,253 (rank: 583 out of 11,555)

Downloads per author, site-wide

Preprints

Functional normalization of 450k methylation array data improves replication in large cancer studies

bioinformatics more details view paper
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  • Since beginning of last month:
    • Site-wide: 6,942 out of 92,757

Comprehensive analysis of retinal development at single cell resolution identifies NFI factors as essential for mitotic exit and specification of late-born cells

developmental biology more details view paper
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    • Site-wide: 1,375 out of 92,757
    • In developmental biology: 18 out of 2,752
  • Year to date:
    • Site-wide: 6,892 out of 92,757
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    • Site-wide: 9,196 out of 92,757

Enter the matrix: factorization uncovers knowledge from omics

systems biology more details view paper
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    • In systems biology: 45 out of 2,374
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Single-cell analysis of human retina identifies evolutionarily conserved and species-specific mechanisms controlling development.

neuroscience more details view paper
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    • In neuroscience: 537 out of 16,513
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    • Site-wide: 4,423 out of 92,757

Epigenetic Regulation of Gene Expression in Cancer: Techniques, Resources, and Analysis

cancer biology more details view paper
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    • Site-wide: 3,921 out of 92,757
    • In cancer biology: 86 out of 3,282
  • Year to date:
    • Site-wide: 25,352 out of 92,757
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    • Site-wide: 23,206 out of 92,757

Decomposing cell identity for transfer learning across cellular measurements, platforms, tissues, and species.

bioinformatics more details view paper
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    • In bioinformatics: 779 out of 8,685
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Integrated time course omics analysis distinguishes immediate therapeutic response from acquired resistance.

cancer biology more details view paper
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    • In cancer biology: 160 out of 3,282
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CancerInSilico: An R/Bioconductor package for combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancer

systems biology more details view paper
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    • In systems biology: 235 out of 2,374
  • Year to date:
    • Site-wide: 36,177 out of 92,757
  • Since beginning of last month:
    • Site-wide: 38,801 out of 92,757

Splice Expression Variation Analysis (SEVA) for Inter-tumor Heterogeneity of Gene Isoform Usage in Cancer

genomics more details view paper
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    • Site-wide: 9,183 out of 92,757
    • In genomics: 1,350 out of 5,851
  • Year to date:
    • Site-wide: 44,285 out of 92,757
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    • Site-wide: 38,910 out of 92,757

Expression variation analysis for tumor heterogeneity in single-cell RNA-sequencing data

bioinformatics more details view paper
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    • Site-wide: 11,256 out of 92,757
    • In bioinformatics: 1,814 out of 8,685
  • Year to date:
    • Site-wide: 22,754 out of 92,757
  • Since beginning of last month:
    • Site-wide: 31,785 out of 92,757

Variation of human neural stem cells generating organizer states in vitro before committing to cortical excitatory or inhibitory neuronal fates

neuroscience more details view paper
  • Downloaded 983 times
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    • Site-wide: 12,298 out of 92,757
    • In neuroscience: 1,945 out of 16,513
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    • Site-wide: 6,888 out of 92,757
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    • Site-wide: 23,324 out of 92,757

StereoGene: Rapid Estimation of Genomewide Correlation of Continuous or Interval Feature Data

bioinformatics more details view paper
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    • Site-wide: 13,479 out of 92,757
    • In bioinformatics: 2,111 out of 8,685
  • Year to date:
    • Site-wide: 42,185 out of 92,757
  • Since beginning of last month:
    • Site-wide: 46,824 out of 92,757

Integrated single cell and bulk multi-omics reveals heterogeneity and early changes in pathways associated with cetuximab resistance in HNSCC sensitive cell lines

cancer biology more details view paper
  • Downloaded 628 times
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    • Site-wide: 24,325 out of 92,757
    • In cancer biology: 756 out of 3,282
  • Year to date:
    • Site-wide: 12,932 out of 92,757
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    • Site-wide: 23,906 out of 92,757

PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF

bioinformatics more details view paper
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    • Site-wide: 25,039 out of 92,757
    • In bioinformatics: 3,466 out of 8,685
  • Year to date:
    • Site-wide: 51,753 out of 92,757
  • Since beginning of last month:
    • Site-wide: 27,521 out of 92,757

Matrix factorization and transfer learning uncover regulatory biology across multiple single-cell ATAC-seq data sets

bioinformatics more details view paper
  • Downloaded 594 times
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    • Site-wide: 26,227 out of 92,757
    • In bioinformatics: 3,574 out of 8,685
  • Year to date:
    • Site-wide: 3,740 out of 92,757
  • Since beginning of last month:
    • Site-wide: 12,019 out of 92,757

projectR: An R/Bioconductor package for transfer learning via PCA, NMF, correlation, and clustering

bioinformatics more details view paper
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    • Site-wide: 32,386 out of 92,757
    • In bioinformatics: 4,163 out of 8,685
  • Year to date:
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    • Site-wide: 39,115 out of 92,757

CoGAPS 3: Bayesian non-negative matrix factorization for single-cell analysis with asynchronous updates and sparse data structures

bioinformatics more details view paper
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    • Site-wide: 36,412 out of 92,757
    • In bioinformatics: 4,524 out of 8,685
  • Year to date:
    • Site-wide: 23,199 out of 92,757
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    • Site-wide: 17,460 out of 92,757

REVA: a rank-based multi-dimensional measure of correlation

bioinformatics more details view paper
  • Downloaded 453 times
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    • In bioinformatics: 4,570 out of 8,685
  • Year to date:
    • Site-wide: 52,323 out of 92,757
  • Since beginning of last month:
    • Site-wide: 40,196 out of 92,757

Synthesizer: Expediting synthesis studies from context-free data with natural language processing

bioinformatics more details view paper
  • Downloaded 452 times
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    • Site-wide: 36,822 out of 92,757
    • In bioinformatics: 4,574 out of 8,685
  • Year to date:
    • Site-wide: 76,191 out of 92,757
  • Since beginning of last month:
    • Site-wide: 44,134 out of 92,757

Aging interacts with tumor biology to produce major changes in the immune tumor microenvironment

cancer biology more details view paper
  • Downloaded 199 times
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    • Site-wide: 71,766 out of 92,757
    • In cancer biology: 2,407 out of 3,282
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    • Site-wide: 19,507 out of 92,757
  • Since beginning of last month:
    • Site-wide: 16,567 out of 92,757

A novel mechanism of natural killer cell response to anti-CTLA-4 therapy identified by integrative analysis of mouse and human tumors

cancer biology more details view paper
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    • Site-wide: 76,528 out of 92,757
    • In cancer biology: 2,591 out of 3,282
  • Year to date:
    • Site-wide: 24,031 out of 92,757
  • Since beginning of last month:
    • Site-wide: 12,501 out of 92,757

Immune Selection Pressure Contributes to Pancreatic Cancer Immune Evasion

cancer biology more details view paper
  • Downloaded 170 times
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    • Site-wide: 76,728 out of 92,757
    • In cancer biology: 2,594 out of 3,282
  • Year to date:
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  • Since beginning of last month:
    • Site-wide: 11,813 out of 92,757

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