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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 64,969 bioRxiv papers from 287,914 authors.

Author: Elana J. Fertig

Rankings

  • All-time downloads: 20,900 (rank: 1,198 out of 287,944)
  • Categories:
    • bioinformatics: 8,330 (rank: 405 out of 25,013)
    • cancer biology: 3,262 (rank: 433 (tie) out of 17,914)
    • developmental biology: 3,149 (rank: 168 (tie) out of 10,781)
    • genomics: 1,058 (rank: 12,303 (tie) out of 32,737)
    • neuroscience: 1,228 (rank: 8,182 (tie) out of 47,771)
    • systems biology: 3,873 (rank: 317 out of 8,742)

Downloads per author, site-wide

Preprints

Functional normalization of 450k methylation array data improves replication in large cancer studies

bioinformatics more details view paper
  • Downloaded 3,421 times
  • Download rankings, all-time:
    • Site-wide: 882 out of 64,979
    • In bioinformatics: 178 out of 6,432
  • Year to date:
    • Site-wide: 24,055 out of 64,979
  • Since beginning of last month:
    • Site-wide: 36,164 out of 64,979

Comprehensive analysis of retinal development at single cell resolution identifies NFI factors as essential for mitotic exit and specification of late-born cells

developmental biology more details view paper
  • Downloaded 3,149 times
  • Download rankings, all-time:
    • Site-wide: 1,025 out of 64,979
    • In developmental biology: 14 out of 1,925
  • Year to date:
    • Site-wide: 703 out of 64,979
  • Since beginning of last month:
    • Site-wide: 3,548 out of 64,979

Enter the matrix: factorization uncovers knowledge from omics

systems biology more details view paper
  • Downloaded 2,804 times
  • Download rankings, all-time:
    • Site-wide: 1,281 out of 64,979
    • In systems biology: 28 out of 1,831
  • Year to date:
    • Site-wide: 7,090 out of 64,979
  • Since beginning of last month:
    • Site-wide: 12,819 out of 64,979

Decomposing cell identity for transfer learning across cellular measurements, platforms, tissues, and species.

bioinformatics more details view paper
  • Downloaded 1,702 times
  • Download rankings, all-time:
    • Site-wide: 3,066 out of 64,979
    • In bioinformatics: 619 out of 6,432
  • Year to date:
    • Site-wide: 3,139 out of 64,979
  • Since beginning of last month:
    • Site-wide: 11,039 out of 64,979

Epigenetic Regulation of Gene Expression in Cancer: Techniques, Resources, and Analysis

cancer biology more details view paper
  • Downloaded 1,683 times
  • Download rankings, all-time:
    • Site-wide: 3,126 out of 64,979
    • In cancer biology: 77 out of 2,163
  • Year to date:
    • Site-wide: 12,324 out of 64,979
  • Since beginning of last month:
    • Site-wide: 17,595 out of 64,979

Integrated time course omics analysis distinguishes immediate therapeutic response from acquired resistance.

cancer biology more details view paper
  • Downloaded 1,310 times
  • Download rankings, all-time:
    • Site-wide: 4,742 out of 64,979
    • In cancer biology: 123 out of 2,163
  • Year to date:
    • Site-wide: 23,706 out of 64,979
  • Since beginning of last month:
    • Site-wide: 16,839 out of 64,979

CancerInSilico: An R/Bioconductor package for combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancer

systems biology more details view paper
  • Downloaded 1,069 times
  • Download rankings, all-time:
    • Site-wide: 6,669 out of 64,979
    • In systems biology: 189 out of 1,831
  • Year to date:
    • Site-wide: 7,411 out of 64,979
  • Since beginning of last month:
    • Site-wide: 15,525 out of 64,979

Splice Expression Variation Analysis (SEVA) for Inter-tumor Heterogeneity of Gene Isoform Usage in Cancer

genomics more details view paper
  • Downloaded 1,058 times
  • Download rankings, all-time:
    • Site-wide: 6,769 out of 64,979
    • In genomics: 1,098 out of 4,442
  • Year to date:
    • Site-wide: 28,928 out of 64,979
  • Since beginning of last month:
    • Site-wide: 30,200 out of 64,979

Expression variation analysis for tumor heterogeneity in single-cell RNA-sequencing data

bioinformatics more details view paper
  • Downloaded 818 times
  • Download rankings, all-time:
    • Site-wide: 10,148 out of 64,979
    • In bioinformatics: 1,749 out of 6,432
  • Year to date:
    • Site-wide: 4,486 out of 64,979
  • Since beginning of last month:
    • Site-wide: 23,586 out of 64,979

StereoGene: Rapid Estimation of Genomewide Correlation of Continuous or Interval Feature Data

bioinformatics more details view paper
  • Downloaded 808 times
  • Download rankings, all-time:
    • Site-wide: 10,323 out of 64,979
    • In bioinformatics: 1,773 out of 6,432
  • Year to date:
    • Site-wide: 40,585 out of 64,979
  • Since beginning of last month:
    • Site-wide: 31,766 out of 64,979

Single-cell analysis of human retina identifies evolutionarily conserved and species-specific mechanisms controlling development.

neuroscience more details view paper
  • Downloaded 740 times
  • Download rankings, all-time:
    • Site-wide: 11,755 out of 64,979
    • In neuroscience: 1,895 out of 11,632
  • Year to date:
    • Site-wide: 2,863 out of 64,979
  • Since beginning of last month:
    • Site-wide: 111 out of 64,979

PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF

bioinformatics more details view paper
  • Downloaded 515 times
  • Download rankings, all-time:
    • Site-wide: 19,394 out of 64,979
    • In bioinformatics: 2,877 out of 6,432
  • Year to date:
    • Site-wide: 51,301 out of 64,979
  • Since beginning of last month:
    • Site-wide: 39,407 out of 64,979

Human cortical neural stem cells generate regional organizer states in vitro before committing to excitatory neuronal fates

neuroscience more details view paper
  • Downloaded 488 times
  • Download rankings, all-time:
    • Site-wide: 20,722 out of 64,979
    • In neuroscience: 3,477 out of 11,632
  • Year to date:
    • Site-wide: 5,880 out of 64,979
  • Since beginning of last month:
    • Site-wide: None out of 64,979

Synthesizer: Expediting synthesis studies from context-free data with natural language processing

bioinformatics more details view paper
  • Downloaded 379 times
  • Download rankings, all-time:
    • Site-wide: 27,562 out of 64,979
    • In bioinformatics: 3,706 out of 6,432
  • Year to date:
    • Site-wide: 59,006 out of 64,979
  • Since beginning of last month:
    • Site-wide: 38,304 out of 64,979

REVA: a rank-based multi-dimensional measure of correlation

bioinformatics more details view paper
  • Downloaded 344 times
  • Download rankings, all-time:
    • Site-wide: 30,441 out of 64,979
    • In bioinformatics: 3,951 out of 6,432
  • Year to date:
    • Site-wide: 45,384 out of 64,979
  • Since beginning of last month:
    • Site-wide: 51,804 out of 64,979

projectR: An R/Bioconductor package for transfer learning via PCA, NMF, correlation, and clustering

bioinformatics more details view paper
  • Downloaded 343 times
  • Download rankings, all-time:
    • Site-wide: 30,497 out of 64,979
    • In bioinformatics: 3,962 out of 6,432
  • Year to date:
    • Site-wide: 10,500 out of 64,979
  • Since beginning of last month:
    • Site-wide: 17,239 out of 64,979

Integrated single cell and bulk multi-omics reveals heterogeneity and early changes in pathways associated with cetuximab resistance in HNSCC sensitive cell lines

cancer biology more details view paper
  • Downloaded 269 times
  • Download rankings, all-time:
    • Site-wide: 37,713 out of 64,979
    • In cancer biology: 1,159 out of 2,163
  • Year to date:
    • Site-wide: 15,081 out of 64,979
  • Since beginning of last month:
    • Site-wide: 16,031 out of 64,979

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