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Author: David L Robertson

Rankings

  • All-time downloads: 164,068 (rank: 904 )
  • Categories:
    • bioinformatics: 3,750 (rank: 5,040 )
    • epidemiology: 9,902 (rank: 2,195 (tie) )
    • evolutionary biology: 35,866 (rank: 45 )
    • genetics: 565 (rank: 31,042 (tie) )
    • genomics: 438 (rank: 48,898 (tie) )
    • immunology: 245 (rank: 44,460 (tie) )
    • infectious diseases: 56,742 (rank: 1,345 )
    • microbiology: 51,159 (rank: 400 )
    • systems biology: 556 (rank: 11,078 (tie) )

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Preprints

Recurrent emergence and transmission of a SARS-CoV-2 Spike deletion H69/V70

microbiology more details view paper
  • Downloaded 33,698 times
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    • Site-wide: 312
    • In microbiology: 29
  • Year to date:
    • Site-wide: 1,536
  • Since beginning of last month:
    • Site-wide: 4,345

Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic

evolutionary biology more details view paper
  • Downloaded 17,715 times
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    • Site-wide: 649
    • In evolutionary biology: 9
  • Year to date:
    • Site-wide: 12,104
  • Since beginning of last month:
    • Site-wide: 25,262

Reduced neutralisation of the Delta (B.1.617.2) SARS-CoV-2 variant of concern following vaccination

infectious diseases more details view paper
  • Downloaded 15,505 times
  • Download rankings, all-time:
    • Site-wide: 768
    • In infectious diseases: 270
  • Year to date:
    • Site-wide: 7,006
  • Since beginning of last month:
    • Site-wide: 14,005

The circulating SARS-CoV-2 spike variant N439K maintains fitness while evading antibody-mediated immunity

microbiology more details view paper
  • Downloaded 15,235 times
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    • Site-wide: 786
    • In microbiology: 84
  • Year to date:
    • Site-wide: 12,560
  • Since beginning of last month:
    • Site-wide: 8,187

The hyper-transmissible SARS-CoV-2 Omicron variant exhibits significant antigenic change, vaccine escape and a switch in cell entry mechanism

infectious diseases more details view paper
  • Downloaded 13,492 times
  • Download rankings, all-time:
    • Site-wide: 918
    • In infectious diseases: 312
  • Year to date:
    • Site-wide: 98
  • Since beginning of last month:
    • Site-wide: 2,601

Genomic epidemiology of SARS-CoV-2 spread in Scotland highlights the role of European travel in COVID-19 emergence

infectious diseases more details view paper
  • Downloaded 9,062 times
  • Download rankings, all-time:
    • Site-wide: 1,532
    • In infectious diseases: 459
  • Year to date:
    • Site-wide: 49,592
  • Since beginning of last month:
    • Site-wide: 51,783

Adeno-associated virus 2 infection in children with non-A-E hepatitis

infectious diseases more details view paper
  • Downloaded 8,337 times
  • Download rankings, all-time:
    • Site-wide: 1,704
    • In infectious diseases: 614
  • Year to date:
    • Site-wide: 171
  • Since beginning of last month:
    • Site-wide: 534

Exploring the natural origins of SARS-CoV-2 in the light of recombination

evolutionary biology more details view paper
  • Downloaded 6,914 times
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    • Site-wide: 2,203
    • In evolutionary biology: 25
  • Year to date:
    • Site-wide: 5,844
  • Since beginning of last month:
    • Site-wide: 27,145

Evaluating the effects of SARS-CoV-2 Spike mutation D614G on transmissibility and pathogenicity

epidemiology more details view paper
  • Downloaded 6,103 times
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    • Site-wide: 2,616
    • In epidemiology: 298
  • Year to date:
    • Site-wide: 67,015
  • Since beginning of last month:
    • Site-wide: 109,160

The emergence and ongoing convergent evolution of the N501Y lineages coincides with a major global shift in the SARS-CoV-2 selective landscape

infectious diseases more details view paper
  • Downloaded 5,656 times
  • Download rankings, all-time:
    • Site-wide: 2,882
    • In infectious diseases: 735
  • Year to date:
    • Site-wide: 4,254
  • Since beginning of last month:
    • Site-wide: 10,574

Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function

evolutionary biology more details view paper
  • Downloaded 5,041 times
  • Download rankings, all-time:
    • Site-wide: 3,358
    • In evolutionary biology: 46
  • Year to date:
    • Site-wide: 318
  • Since beginning of last month:
    • Site-wide: 9,881

Natural selection in the evolution of SARS-CoV-2 in bats, not humans, created a highly capable human pathogen

evolutionary biology more details view paper
  • Downloaded 3,443 times
  • Download rankings, all-time:
    • Site-wide: 5,809
    • In evolutionary biology: 103
  • Year to date:
    • Site-wide: 28,156
  • Since beginning of last month:
    • Site-wide: 22,596

Predicting the mutational drivers of future SARS-CoV-2 variants of concern

infectious diseases more details view paper
  • Downloaded 3,204 times
  • Download rankings, all-time:
    • Site-wide: 6,470
    • In infectious diseases: 1,217
  • Year to date:
    • Site-wide: 13,778
  • Since beginning of last month:
    • Site-wide: 35,628

Inconsistent directions of change in case severity across successive SARS-CoV-2 variant waves suggests an unpredictable future

epidemiology more details view paper
  • Downloaded 2,440 times
  • Download rankings, all-time:
    • Site-wide: 9,630
    • In epidemiology: 894
  • Year to date:
    • Site-wide: 865
  • Since beginning of last month:
    • Site-wide: 28,601

A Prenylated dsRNA Sensor Protects Against Severe COVID-19 and is Absent in Horseshoe Bats

infectious diseases more details view paper
  • Downloaded 2,092 times
  • Download rankings, all-time:
    • Site-wide: 12,180
    • In infectious diseases: 1,757
  • Year to date:
    • Site-wide: 18,422
  • Since beginning of last month:
    • Site-wide: 58,839

Respiratory disease in cats associated with human-to-cat transmission of SARS-CoV-2 in the UK

microbiology more details view paper
  • Downloaded 1,986 times
  • Download rankings, all-time:
    • Site-wide: 13,146
    • In microbiology: 810
  • Year to date:
    • Site-wide: 20,085
  • Since beginning of last month:
    • Site-wide: 22,594

The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK

evolutionary biology more details view paper
  • Downloaded 1,564 times
  • Download rankings, all-time:
    • Site-wide: 19,008
    • In evolutionary biology: 633
  • Year to date:
    • Site-wide: 1,685
  • Since beginning of last month:
    • Site-wide: 19,440

An image processing method for metagenomic binning: multi-resolution genomic binary patterns

bioinformatics more details view paper
  • Downloaded 1,291 times
  • Download rankings, all-time:
    • Site-wide: 25,826
    • In bioinformatics: 2,710
  • Year to date:
    • Site-wide: 146,287
  • Since beginning of last month:
    • Site-wide: 192,921

Generation and transmission of inter-lineage recombinants in the SARS-CoV-2 pandemic

infectious diseases more details view paper
  • Downloaded 1,180 times
  • Download rankings, all-time:
    • Site-wide: 29,736
    • In infectious diseases: 2,811
  • Year to date:
    • Site-wide: 49,097
  • Since beginning of last month:
    • Site-wide: 86,753

Ebola virus is evolving but not changing: no evidence for functional change in EBOV from 1976 to the 2014 outbreak

evolutionary biology more details view paper
  • Downloaded 1,095 times
  • Download rankings, all-time:
    • Site-wide: 33,413
    • In evolutionary biology: 1,200
  • Year to date:
    • Site-wide: 208,037
  • Since beginning of last month:
    • Site-wide: 192,835

Epidemic waves of COVID-19 in Scotland: a genomic perspective on the impact of the introduction and relaxation of lockdown on SARS-CoV-2

epidemiology more details view paper
  • Downloaded 1,042 times
  • Download rankings, all-time:
    • Site-wide: 36,032
    • In epidemiology: 1,940
  • Year to date:
    • Site-wide: 51,156
  • Since beginning of last month:
    • Site-wide: 117,031

The SARS-CoV-2 Alpha variant is associated with increased clinical severity of disease in Scotland: a genomics-based prospective cohort analysis

epidemiology more details view paper
  • Downloaded 818 times
  • Download rankings, all-time:
    • Site-wide: 52,215
    • In epidemiology: 2,849
  • Year to date:
    • Site-wide: 21,002
  • Since beginning of last month:
    • Site-wide: 33,094

Quantifying and cataloguing unknown sequences within human microbiomes

bioinformatics more details view paper
  • Downloaded 731 times
  • Download rankings, all-time:
    • Site-wide: 61,543
    • In bioinformatics: 5,726
  • Year to date:
    • Site-wide: 25,475
  • Since beginning of last month:
    • Site-wide: 155,480

Meta-analysis of virus-induced host gene expression reveals unique signatures of immune dysregulation induced by SARS-CoV-2

bioinformatics more details view paper
  • Downloaded 720 times
  • Download rankings, all-time:
    • Site-wide: 62,782
    • In bioinformatics: 5,778
  • Year to date:
    • Site-wide: 91,293
  • Since beginning of last month:
    • Site-wide: None

Unique protein features of SARS-CoV-2 relative to other Sarbecoviruses

evolutionary biology more details view paper
  • Downloaded 708 times
  • Download rankings, all-time:
    • Site-wide: 64,334
    • In evolutionary biology: 2,784
  • Year to date:
    • Site-wide: 126,809
  • Since beginning of last month:
    • Site-wide: 137,596

Using set theory to reduce redundancy in pathway sets

bioinformatics more details view paper
  • Downloaded 648 times
  • Download rankings, all-time:
    • Site-wide: 72,838
    • In bioinformatics: 6,690
  • Year to date:
    • Site-wide: 146,138
  • Since beginning of last month:
    • Site-wide: 162,593

Identification of important amino acid replacements in the 2013-2016 Ebola virus outbreak

microbiology more details view paper
  • Downloaded 582 times
  • Download rankings, all-time:
    • Site-wide: 83,595
    • In microbiology: 5,160
  • Year to date:
    • Site-wide: 185,862
  • Since beginning of last month:
    • Site-wide: 165,172

Network controllability: viruses are driver agents in dynamic molecular systems

systems biology more details view paper
  • Downloaded 575 times
  • Download rankings, all-time:
    • Site-wide: 84,751
    • In systems biology: 1,705
  • Year to date:
    • Site-wide: 203,704
  • Since beginning of last month:
    • Site-wide: 162,521

Human genetic disease is greatly influenced by the underlying fragility of evolutionarily ancient genes

genetics more details view paper
  • Downloaded 574 times
  • Download rankings, all-time:
    • Site-wide: 85,040
    • In genetics: 3,134
  • Year to date:
    • Site-wide: 204,174
  • Since beginning of last month:
    • Site-wide: 203,335

Protein Structural Disorder Of The Envelope V3 Loop Contributes To The Switch In Human Immunodeficiency Virus Type 1 Cell Tropism

bioinformatics more details view paper
  • Downloaded 465 times
  • Download rankings, all-time:
    • Site-wide: 108,399
    • In bioinformatics: 8,984
  • Year to date:
    • Site-wide: 198,179
  • Since beginning of last month:
    • Site-wide: 104,018

Increased resolution of African Swine Fever Virus genome patterns based on profile HMM protein domains

genomics more details view paper
  • Downloaded 445 times
  • Download rankings, all-time:
    • Site-wide: 113,103
    • In genomics: 6,310
  • Year to date:
    • Site-wide: 209,035
  • Since beginning of last month:
    • Site-wide: 204,092

Evaluating the effectiveness of rapid SARS-CoV-2 genome sequencing in supporting infection control teams: the COG-UK hospital-onset COVID-19 infection study

infectious diseases more details view paper
  • Downloaded 387 times
  • Download rankings, all-time:
    • Site-wide: 128,811
    • In infectious diseases: 6,287
  • Year to date:
    • Site-wide: 16,574
  • Since beginning of last month:
    • Site-wide: 114,883

Genetic epidemiology of SARS-CoV-2 transmission in renal dialysis units - a high risk community-hospital interface

infectious diseases more details view paper
  • Downloaded 385 times
  • Download rankings, all-time:
    • Site-wide: 129,457
    • In infectious diseases: 6,141
  • Year to date:
    • Site-wide: 57,245
  • Since beginning of last month:
    • Site-wide: 174,213

The Interferon Resistance of Transmitted HIV-1 is a Consequence of Enhanced Replicative Fitness

microbiology more details view paper
  • Downloaded 379 times
  • Download rankings, all-time:
    • Site-wide: 130,887
    • In microbiology: 9,537
  • Year to date:
    • Site-wide: 31,239
  • Since beginning of last month:
    • Site-wide: 41,241

Defining the Characteristics of Type I Interferon Stimulated Genes: Insight from Expression Data and Machine Learning

immunology more details view paper
  • Downloaded 301 times
  • Download rankings, all-time:
    • Site-wide: 154,249
    • In immunology: 5,033
  • Year to date:
    • Site-wide: 76,042
  • Since beginning of last month:
    • Site-wide: 21,788

The SARS-CoV-2 Spike Protein Mutation Explorer: Using an Interactive Application to Improve the Public Understanding of SARS-CoV-2 Variants of Concern

molecular biology more details view paper
  • Downloaded 255 times
  • Download rankings, all-time:
    • Site-wide: 167,665
    • In molecular biology: None
  • Year to date:
    • Site-wide: 31,796
  • Since beginning of last month:
    • Site-wide: 28,603

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