Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,506 bioRxiv papers from 264,779 authors.

Author: Oliver Stegle

Rankings

  • All-time downloads: 93,810 (rank: 63 out of 264,779)
  • Categories:
    • bioinformatics: 20,212 (rank: 75 out of 23,124)
    • cancer biology: 1,765 (rank: 1,000 out of 15,291)
    • cell biology: 12,456 (rank: 41 (tie) out of 16,783)
    • developmental biology: 4,213 (rank: 60 (tie) out of 9,402)
    • genetics: 10,466 (rank: 726 out of 25,216)
    • genomics: 41,264 (rank: 120 out of 30,243)
    • systems biology: 3,434 (rank: 324 out of 7,794)

Downloads per author, site-wide

Preprints

Using the past to estimate sensory uncertainty

neuroscience more details view paper

No bioRxiv download data for this paper yet.

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,609 times
  • Download rankings, all-time:
    • Site-wide: 73 out of 57,506
    • In cell biology: 2 out of 2,723
  • Year to date:
    • Site-wide: 4,857 out of 57,506
  • Since beginning of last month:
    • Site-wide: 5,869 out of 57,506

Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

genomics more details view paper
  • Downloaded 6,180 times
  • Download rankings, all-time:
    • Site-wide: 245 out of 57,506
    • In genomics: 70 out of 4,027
  • Year to date:
    • Site-wide: 36 out of 57,506
  • Since beginning of last month:
    • Site-wide: 37 out of 57,506

Accurate prediction of single-cell DNA methylation states using deep learning

bioinformatics more details view paper
  • Downloaded 5,794 times
  • Download rankings, all-time:
    • Site-wide: 283 out of 57,506
    • In bioinformatics: 53 out of 5,863
  • Year to date:
    • Site-wide: 9,962 out of 57,506
  • Since beginning of last month:
    • Site-wide: 6,195 out of 57,506

LIMIX: genetic analysis of multiple traits

genetics more details view paper
  • Downloaded 5,655 times
  • Download rankings, all-time:
    • Site-wide: 301 out of 57,506
    • In genetics: 38 out of 3,295
  • Year to date:
    • Site-wide: 10,334 out of 57,506
  • Since beginning of last month:
    • Site-wide: 12,398 out of 57,506

Unraveling the polygenic architecture of complex traits using blood eQTL meta-analysis

genomics more details view paper
  • Downloaded 5,027 times
  • Download rankings, all-time:
    • Site-wide: 364 out of 57,506
    • In genomics: 96 out of 4,027
  • Year to date:
    • Site-wide: 140 out of 57,506
  • Since beginning of last month:
    • Site-wide: 291 out of 57,506

Multi-Omics factor analysis - a framework for unsupervised integration of multi-omic data sets

bioinformatics more details view paper
  • Downloaded 4,422 times
  • Download rankings, all-time:
    • Site-wide: 457 out of 57,506
    • In bioinformatics: 93 out of 5,863
  • Year to date:
    • Site-wide: 2,719 out of 57,506
  • Since beginning of last month:
    • Site-wide: 5,361 out of 57,506

scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells

genomics more details view paper
  • Downloaded 4,410 times
  • Download rankings, all-time:
    • Site-wide: 462 out of 57,506
    • In genomics: 125 out of 4,027
  • Year to date:
    • Site-wide: 7,409 out of 57,506
  • Since beginning of last month:
    • Site-wide: 8,674 out of 57,506

Single cell multi-omics profiling reveals a hierarchical epigenetic landscape during mammalian germ layer specification

developmental biology more details view paper
  • Downloaded 4,213 times
  • Download rankings, all-time:
    • Site-wide: 511 out of 57,506
    • In developmental biology: 2 out of 1,702
  • Year to date:
    • Site-wide: 65 out of 57,506
  • Since beginning of last month:
    • Site-wide: 833 out of 57,506

Germline determinants of the somatic mutation landscape in 2,642 cancer genomes

genomics more details view paper
  • Downloaded 4,012 times
  • Download rankings, all-time:
    • Site-wide: 564 out of 57,506
    • In genomics: 151 out of 4,027
  • Year to date:
    • Site-wide: 1,108 out of 57,506
  • Since beginning of last month:
    • Site-wide: 1,942 out of 57,506

Genomic basis for RNA alterations revealed by whole-genome analyses of 27 cancer types

genomics more details view paper
  • Downloaded 3,270 times
  • Download rankings, all-time:
    • Site-wide: 853 out of 57,506
    • In genomics: 222 out of 4,027
  • Year to date:
    • Site-wide: 2,399 out of 57,506
  • Since beginning of last month:
    • Site-wide: 3,933 out of 57,506

Modelling cell-cell interactions from spatial molecular data with spatial variance component analysis

bioinformatics more details view paper
  • Downloaded 2,844 times
  • Download rankings, all-time:
    • Site-wide: 1,091 out of 57,506
    • In bioinformatics: 226 out of 5,863
  • Year to date:
    • Site-wide: 1,400 out of 57,506
  • Since beginning of last month:
    • Site-wide: 2,149 out of 57,506

Scalable latent-factor models applied to single-cell RNA-seq data separate biological drivers from confounding effects

bioinformatics more details view paper
  • Downloaded 2,758 times
  • Download rankings, all-time:
    • Site-wide: 1,165 out of 57,506
    • In bioinformatics: 246 out of 5,863
  • Year to date:
    • Site-wide: 36,263 out of 57,506
  • Since beginning of last month:
    • Site-wide: 28,780 out of 57,506

Cardelino: Integrating whole exomes and single-cell transcriptomes to reveal phenotypic impact of somatic variants

genomics more details view paper
  • Downloaded 2,740 times
  • Download rankings, all-time:
    • Site-wide: 1,177 out of 57,506
    • In genomics: 276 out of 4,027
  • Year to date:
    • Site-wide: 376 out of 57,506
  • Since beginning of last month:
    • Site-wide: 88 out of 57,506

Temporal mixture modelling of single-cell RNA-seq data resolves a CD4+ T cell fate bifurcation

systems biology more details view paper
  • Downloaded 2,686 times
  • Download rankings, all-time:
    • Site-wide: 1,216 out of 57,506
    • In systems biology: 24 out of 1,638
  • Year to date:
    • Site-wide: 18,950 out of 57,506
  • Since beginning of last month:
    • Site-wide: 14,400 out of 57,506

SpatialDE - Identification of spatially variable genes

genomics more details view paper
  • Downloaded 2,626 times
  • Download rankings, all-time:
    • Site-wide: 1,267 out of 57,506
    • In genomics: 300 out of 4,027
  • Year to date:
    • Site-wide: 11,253 out of 57,506
  • Since beginning of last month:
    • Site-wide: 20,728 out of 57,506

Common genetic variation drives molecular heterogeneity in human iPSCs

genomics more details view paper
  • Downloaded 2,549 times
  • Download rankings, all-time:
    • Site-wide: 1,324 out of 57,506
    • In genomics: 313 out of 4,027
  • Year to date:
    • Site-wide: 32,169 out of 57,506
  • Since beginning of last month:
    • Site-wide: 52,412 out of 57,506

Kipoi: accelerating the community exchange and reuse of predictive models for genomics

bioinformatics more details view paper
  • Downloaded 2,471 times
  • Download rankings, all-time:
    • Site-wide: 1,398 out of 57,506
    • In bioinformatics: 279 out of 5,863
  • Year to date:
    • Site-wide: 690 out of 57,506
  • Since beginning of last month:
    • Site-wide: 1,176 out of 57,506

A linear mixed model approach to study multivariate gene-environment interactions

genetics more details view paper
  • Downloaded 1,957 times
  • Download rankings, all-time:
    • Site-wide: 2,117 out of 57,506
    • In genetics: 208 out of 3,295
  • Year to date:
    • Site-wide: 4,756 out of 57,506
  • Since beginning of last month:
    • Site-wide: 11,930 out of 57,506

A Pan-Cancer Transcriptome Analysis Reveals Pervasive Regulation through Tumor-Associated Alternative Promoters

genomics more details view paper
  • Downloaded 1,642 times
  • Download rankings, all-time:
    • Site-wide: 2,864 out of 57,506
    • In genomics: 571 out of 4,027
  • Year to date:
    • Site-wide: 5,410 out of 57,506
  • Since beginning of last month:
    • Site-wide: 8,851 out of 57,506

Single-cell RNA-seq of differentiating iPS cells reveals dynamic genetic effects on gene expression

genomics more details view paper
  • Downloaded 1,367 times
  • Download rankings, all-time:
    • Site-wide: 3,892 out of 57,506
    • In genomics: 720 out of 4,027
  • Year to date:
    • Site-wide: 573 out of 57,506
  • Since beginning of last month:
    • Site-wide: 927 out of 57,506

Assessing the Gene Regulatory Landscape in 1,188 Human Tumors

cancer biology more details view paper
  • Downloaded 1,187 times
  • Download rankings, all-time:
    • Site-wide: 4,856 out of 57,506
    • In cancer biology: 129 out of 1,856
  • Year to date:
    • Site-wide: 17,188 out of 57,506
  • Since beginning of last month:
    • Site-wide: 39,469 out of 57,506

Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity

bioinformatics more details view paper
  • Downloaded 1,104 times
  • Download rankings, all-time:
    • Site-wide: 5,496 out of 57,506
    • In bioinformatics: 1,052 out of 5,863
  • Year to date:
    • Site-wide: 9,302 out of 57,506
  • Since beginning of last month:
    • Site-wide: 10,622 out of 57,506

LiMMBo: a simple, scalable approach for linear mixed models in high-dimensional genetic association studies

genomics more details view paper
  • Downloaded 964 times
  • Download rankings, all-time:
    • Site-wide: 6,871 out of 57,506
    • In genomics: 1,123 out of 4,027
  • Year to date:
    • Site-wide: 18,259 out of 57,506
  • Since beginning of last month:
    • Site-wide: 20,198 out of 57,506

Screening for genes that accelerate the epigenetic ageing clock in humans reveals a role for the H3K36 methyltransferase NSD1

genomics more details view paper
  • Downloaded 917 times
  • Download rankings, all-time:
    • Site-wide: 7,440 out of 57,506
    • In genomics: 1,177 out of 4,027
  • Year to date:
    • Site-wide: 1,238 out of 57,506
  • Since beginning of last month:
    • Site-wide: 4,214 out of 57,506

Genome-wide Analysis of Differential Transcriptional and Epigenetic Variability Across Human Immune Cell Types

genomics more details view paper
  • Downloaded 909 times
  • Download rankings, all-time:
    • Site-wide: 7,533 out of 57,506
    • In genomics: 1,184 out of 4,027
  • Year to date:
    • Site-wide: 40,327 out of 57,506
  • Since beginning of last month:
    • Site-wide: 52,209 out of 57,506

Population-scale proteome variation in human induced pluripotent stem cells

genomics more details view paper
  • Downloaded 908 times
  • Download rankings, all-time:
    • Site-wide: 7,542 out of 57,506
    • In genomics: 1,185 out of 4,027
  • Year to date:
    • Site-wide: 6,849 out of 57,506
  • Since beginning of last month:
    • Site-wide: 16,661 out of 57,506

Genome-scale oscillations in DNA methylation during exit from pluripotency

genomics more details view paper
  • Downloaded 906 times
  • Download rankings, all-time:
    • Site-wide: 7,575 out of 57,506
    • In genomics: 1,194 out of 4,027
  • Year to date:
    • Site-wide: 25,905 out of 57,506
  • Since beginning of last month:
    • Site-wide: 28,944 out of 57,506

Joint genetic analysis using variant sets reveals polygenic gene-context interactions

genetics more details view paper
  • Downloaded 869 times
  • Download rankings, all-time:
    • Site-wide: 8,081 out of 57,506
    • In genetics: 623 out of 3,295
  • Year to date:
    • Site-wide: 52,096 out of 57,506
  • Since beginning of last month:
    • Site-wide: 55,800 out of 57,506

Identifying extrinsic versus intrinsic drivers of variation in cell behaviour in human iPS cell lines from healthy donors

cell biology more details view paper
  • Downloaded 847 times
  • Download rankings, all-time:
    • Site-wide: 8,387 out of 57,506
    • In cell biology: 282 out of 2,723
  • Year to date:
    • Site-wide: 15,309 out of 57,506
  • Since beginning of last month:
    • Site-wide: 22,504 out of 57,506

Comparative architectures of direct and social genetic effects from the genome-wide association study of 170 phenotypes in laboratory mice

genetics more details view paper
  • Downloaded 825 times
  • Download rankings, all-time:
    • Site-wide: 8,771 out of 57,506
    • In genetics: 663 out of 3,295
  • Year to date:
    • Site-wide: 4,865 out of 57,506
  • Since beginning of last month:
    • Site-wide: 16,315 out of 57,506

Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference

bioinformatics more details view paper
  • Downloaded 819 times
  • Download rankings, all-time:
    • Site-wide: 8,867 out of 57,506
    • In bioinformatics: 1,573 out of 5,863
  • Year to date:
    • Site-wide: 1,495 out of 57,506
  • Since beginning of last month:
    • Site-wide: 1,839 out of 57,506

Genomic determinants of protein abundance variation in colorectal cancer cells

systems biology more details view paper
  • Downloaded 748 times
  • Download rankings, all-time:
    • Site-wide: 10,128 out of 57,506
    • In systems biology: 284 out of 1,638
  • Year to date:
    • Site-wide: 38,665 out of 57,506
  • Since beginning of last month:
    • Site-wide: 36,104 out of 57,506

Genomic Rearrangements Considered as Quantitative Traits

genetics more details view paper
  • Downloaded 690 times
  • Download rankings, all-time:
    • Site-wide: 11,351 out of 57,506
    • In genetics: 814 out of 3,295
  • Year to date:
    • Site-wide: 47,167 out of 57,506
  • Since beginning of last month:
    • Site-wide: 44,319 out of 57,506

Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage

genomics more details view paper
  • Downloaded 672 times
  • Download rankings, all-time:
    • Site-wide: 11,795 out of 57,506
    • In genomics: 1,643 out of 4,027
  • Year to date:
    • Site-wide: 52,745 out of 57,506
  • Since beginning of last month:
    • Site-wide: 52,530 out of 57,506

Tandem duplications lead to loss of fitness effects in CRISPR-Cas9 data

genomics more details view paper
  • Downloaded 633 times
  • Download rankings, all-time:
    • Site-wide: 12,819 out of 57,506
    • In genomics: 1,740 out of 4,027
  • Year to date:
    • Site-wide: 25,293 out of 57,506
  • Since beginning of last month:
    • Site-wide: 36,744 out of 57,506

Integrative Genome-wide Analysis of the Determinants of RNA Splicing in Kidney Renal Clear Cell Carcinoma

cancer biology more details view paper
  • Downloaded 578 times
  • Download rankings, all-time:
    • Site-wide: 14,499 out of 57,506
    • In cancer biology: 421 out of 1,856
  • Year to date:
    • Site-wide: 51,768 out of 57,506
  • Since beginning of last month:
    • Site-wide: 46,072 out of 57,506

Multi-Tissue DNA Methylation Age Predictor In Mouse

genomics more details view paper
  • Downloaded 497 times
  • Download rankings, all-time:
    • Site-wide: 17,625 out of 57,506
    • In genomics: 2,127 out of 4,027
  • Year to date:
    • Site-wide: 49,628 out of 57,506
  • Since beginning of last month:
    • Site-wide: 30,533 out of 57,506

Interactions between genetic variation and cellular environment in skeletal muscle gene expression

genetics more details view paper
  • Downloaded 470 times
  • Download rankings, all-time:
    • Site-wide: 18,808 out of 57,506
    • In genetics: 1,290 out of 3,295
  • Year to date:
    • Site-wide: 51,648 out of 57,506
  • Since beginning of last month:
    • Site-wide: 52,845 out of 57,506

Multi-omics characterization of interaction-mediated control of human protein abundance levels

genomics more details view paper
  • Downloaded 343 times
  • Download rankings, all-time:
    • Site-wide: 26,412 out of 57,506
    • In genomics: 2,724 out of 4,027
  • Year to date:
    • Site-wide: 17,072 out of 57,506
  • Since beginning of last month:
    • Site-wide: 30,618 out of 57,506

Genomic properties of structural variants and short tandem repeats that impact gene expression and complex traits in humans

genomics more details view paper
  • Downloaded 271 times
  • Download rankings, all-time:
    • Site-wide: 32,485 out of 57,506
    • In genomics: 3,048 out of 4,027
  • Year to date:
    • Site-wide: 9,634 out of 57,506
  • Since beginning of last month:
    • Site-wide: 672 out of 57,506

Discovery and Quality Analysis of a Comprehensive Set of Structural Variants and Short Tandem Repeats

genomics more details view paper
  • Downloaded 247 times
  • Download rankings, all-time:
    • Site-wide: 34,837 out of 57,506
    • In genomics: 3,171 out of 4,027
  • Year to date:
    • Site-wide: 11,109 out of 57,506
  • Since beginning of last month:
    • Site-wide: 804 out of 57,506

In-depth genetic analysis of 6p21.3 reveals insights into associations between HLA types and complex traits and disease

genomics more details view paper
  • Downloaded 174 times
  • Download rankings, all-time:
    • Site-wide: 43,110 out of 57,506
    • In genomics: 3,537 out of 4,027
  • Year to date:
    • Site-wide: 17,916 out of 57,506
  • Since beginning of last month:
    • Site-wide: 38,759 out of 57,506

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News