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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 52,985 bioRxiv papers from 245,402 authors.

Author: Oliver Stegle

Rankings

  • All-time downloads: 86,845 (rank: 69 out of 245,402)
  • Categories:
    • bioinformatics: 19,216 (rank: 74 out of 21,701)
    • cancer biology: 1,720 (rank: 930 (tie) out of 13,766)
    • cell biology: 12,316 (rank: 41 (tie) out of 15,337)
    • developmental biology: 3,892 (rank: 55 (tie) out of 8,491)
    • genetics: 10,250 (rank: 697 out of 23,731)
    • genomics: 35,993 (rank: 130 out of 28,326)
    • neuroscience: 108 (rank: 34,633 (tie) out of 37,802)
    • systems biology: 3,350 (rank: 247 out of 7,277)

Downloads per author, site-wide

Preprints

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,515 times
  • Download rankings, all-time:
    • Site-wide: 68 out of 52,985
    • In cell biology: 2 out of 2,499
  • Year to date:
    • Site-wide: 4,689 out of 52,985
  • Since beginning of last month:
    • Site-wide: 6,015 out of 52,985

Accurate prediction of single-cell DNA methylation states using deep learning

bioinformatics more details view paper
  • Downloaded 5,703 times
  • Download rankings, all-time:
    • Site-wide: 255 out of 52,985
    • In bioinformatics: 50 out of 5,530
  • Year to date:
    • Site-wide: 11,691 out of 52,985
  • Since beginning of last month:
    • Site-wide: 17,155 out of 52,985

LIMIX: genetic analysis of multiple traits

genetics more details view paper
  • Downloaded 5,587 times
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    • Site-wide: 265 out of 52,985
    • In genetics: 31 out of 3,086
  • Year to date:
    • Site-wide: 10,340 out of 52,985
  • Since beginning of last month:
    • Site-wide: 16,051 out of 52,985

Unraveling the polygenic architecture of complex traits using blood eQTL meta-analysis

genomics more details view paper
  • Downloaded 4,401 times
  • Download rankings, all-time:
    • Site-wide: 415 out of 52,985
    • In genomics: 115 out of 3,779
  • Year to date:
    • Site-wide: 138 out of 52,985
  • Since beginning of last month:
    • Site-wide: 293 out of 52,985

scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells

genomics more details view paper
  • Downloaded 4,340 times
  • Download rankings, all-time:
    • Site-wide: 433 out of 52,985
    • In genomics: 120 out of 3,779
  • Year to date:
    • Site-wide: 6,950 out of 52,985
  • Since beginning of last month:
    • Site-wide: 7,350 out of 52,985

Multi-Omics factor analysis - a framework for unsupervised integration of multi-omic data sets

bioinformatics more details view paper
  • Downloaded 4,318 times
  • Download rankings, all-time:
    • Site-wide: 439 out of 52,985
    • In bioinformatics: 91 out of 5,530
  • Year to date:
    • Site-wide: 2,436 out of 52,985
  • Since beginning of last month:
    • Site-wide: 5,312 out of 52,985

Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

genomics more details view paper
  • Downloaded 4,288 times
  • Download rankings, all-time:
    • Site-wide: 447 out of 52,985
    • In genomics: 123 out of 3,779
  • Year to date:
    • Site-wide: 39 out of 52,985
  • Since beginning of last month:
    • Site-wide: 1 out of 52,985

Single cell multi-omics profiling reveals a hierarchical epigenetic landscape during mammalian germ layer specification

developmental biology more details view paper
  • Downloaded 3,892 times
  • Download rankings, all-time:
    • Site-wide: 548 out of 52,985
    • In developmental biology: 4 out of 1,549
  • Year to date:
    • Site-wide: 46 out of 52,985
  • Since beginning of last month:
    • Site-wide: 363 out of 52,985

Germline determinants of the somatic mutation landscape in 2,642 cancer genomes

genomics more details view paper
  • Downloaded 3,799 times
  • Download rankings, all-time:
    • Site-wide: 573 out of 52,985
    • In genomics: 154 out of 3,779
  • Year to date:
    • Site-wide: 1,087 out of 52,985
  • Since beginning of last month:
    • Site-wide: 1,603 out of 52,985

Genomic basis for RNA alterations revealed by whole-genome analyses of 27 cancer types

genomics more details view paper
  • Downloaded 3,145 times
  • Download rankings, all-time:
    • Site-wide: 822 out of 52,985
    • In genomics: 216 out of 3,779
  • Year to date:
    • Site-wide: 2,259 out of 52,985
  • Since beginning of last month:
    • Site-wide: 5,401 out of 52,985

Scalable latent-factor models applied to single-cell RNA-seq data separate biological drivers from confounding effects

bioinformatics more details view paper
  • Downloaded 2,727 times
  • Download rankings, all-time:
    • Site-wide: 1,068 out of 52,985
    • In bioinformatics: 226 out of 5,530
  • Year to date:
    • Site-wide: 34,899 out of 52,985
  • Since beginning of last month:
    • Site-wide: 29,250 out of 52,985

Modelling cell-cell interactions from spatial molecular data with spatial variance component analysis

bioinformatics more details view paper
  • Downloaded 2,661 times
  • Download rankings, all-time:
    • Site-wide: 1,110 out of 52,985
    • In bioinformatics: 234 out of 5,530
  • Year to date:
    • Site-wide: 1,342 out of 52,985
  • Since beginning of last month:
    • Site-wide: 3,251 out of 52,985

Temporal mixture modelling of single-cell RNA-seq data resolves a CD4+ T cell fate bifurcation

systems biology more details view paper
  • Downloaded 2,634 times
  • Download rankings, all-time:
    • Site-wide: 1,129 out of 52,985
    • In systems biology: 23 out of 1,547
  • Year to date:
    • Site-wide: 19,461 out of 52,985
  • Since beginning of last month:
    • Site-wide: 16,581 out of 52,985

SpatialDE - Identification of spatially variable genes

genomics more details view paper
  • Downloaded 2,577 times
  • Download rankings, all-time:
    • Site-wide: 1,168 out of 52,985
    • In genomics: 275 out of 3,779
  • Year to date:
    • Site-wide: 9,969 out of 52,985
  • Since beginning of last month:
    • Site-wide: 15,057 out of 52,985

Common genetic variation drives molecular heterogeneity in human iPSCs

genomics more details view paper
  • Downloaded 2,530 times
  • Download rankings, all-time:
    • Site-wide: 1,208 out of 52,985
    • In genomics: 286 out of 3,779
  • Year to date:
    • Site-wide: 26,732 out of 52,985
  • Since beginning of last month:
    • Site-wide: 36,594 out of 52,985

Kipoi: accelerating the community exchange and reuse of predictive models for genomics

bioinformatics more details view paper
  • Downloaded 2,161 times
  • Download rankings, all-time:
    • Site-wide: 1,614 out of 52,985
    • In bioinformatics: 329 out of 5,530
  • Year to date:
    • Site-wide: 743 out of 52,985
  • Since beginning of last month:
    • Site-wide: 531 out of 52,985

A linear mixed model approach to study multivariate gene-environment interactions

genetics more details view paper
  • Downloaded 1,903 times
  • Download rankings, all-time:
    • Site-wide: 2,012 out of 52,985
    • In genetics: 201 out of 3,086
  • Year to date:
    • Site-wide: 3,832 out of 52,985
  • Since beginning of last month:
    • Site-wide: 7,507 out of 52,985

Cardelino: Integrating whole exomes and single-cell transcriptomes to reveal phenotypic impact of somatic variants

genomics more details view paper
  • Downloaded 1,792 times
  • Download rankings, all-time:
    • Site-wide: 2,220 out of 52,985
    • In genomics: 476 out of 3,779
  • Year to date:
    • Site-wide: 1,114 out of 52,985
  • Since beginning of last month:
    • Site-wide: 1,461 out of 52,985

A Pan-Cancer Transcriptome Analysis Reveals Pervasive Regulation through Tumor-Associated Alternative Promoters

genomics more details view paper
  • Downloaded 1,566 times
  • Download rankings, all-time:
    • Site-wide: 2,780 out of 52,985
    • In genomics: 561 out of 3,779
  • Year to date:
    • Site-wide: 4,904 out of 52,985
  • Since beginning of last month:
    • Site-wide: 8,300 out of 52,985

Assessing the Gene Regulatory Landscape in 1,188 Human Tumors

cancer biology more details view paper
  • Downloaded 1,163 times
  • Download rankings, all-time:
    • Site-wide: 4,507 out of 52,985
    • In cancer biology: 120 out of 1,704
  • Year to date:
    • Site-wide: 13,523 out of 52,985
  • Since beginning of last month:
    • Site-wide: 16,988 out of 52,985

Single-cell RNA-seq of differentiating iPS cells reveals dynamic genetic effects on gene expression

genomics more details view paper
  • Downloaded 1,056 times
  • Download rankings, all-time:
    • Site-wide: 5,261 out of 52,985
    • In genomics: 907 out of 3,779
  • Year to date:
    • Site-wide: 580 out of 52,985
  • Since beginning of last month:
    • Site-wide: 70 out of 52,985

Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity

bioinformatics more details view paper
  • Downloaded 1,043 times
  • Download rankings, all-time:
    • Site-wide: 5,364 out of 52,985
    • In bioinformatics: 1,038 out of 5,530
  • Year to date:
    • Site-wide: 8,621 out of 52,985
  • Since beginning of last month:
    • Site-wide: 12,809 out of 52,985

LiMMBo: a simple, scalable approach for linear mixed models in high-dimensional genetic association studies

genomics more details view paper
  • Downloaded 920 times
  • Download rankings, all-time:
    • Site-wide: 6,565 out of 52,985
    • In genomics: 1,087 out of 3,779
  • Year to date:
    • Site-wide: 17,317 out of 52,985
  • Since beginning of last month:
    • Site-wide: 25,712 out of 52,985

Genome-wide Analysis of Differential Transcriptional and Epigenetic Variability Across Human Immune Cell Types

genomics more details view paper
  • Downloaded 894 times
  • Download rankings, all-time:
    • Site-wide: 6,860 out of 52,985
    • In genomics: 1,116 out of 3,779
  • Year to date:
    • Site-wide: 33,537 out of 52,985
  • Since beginning of last month:
    • Site-wide: 22,593 out of 52,985

Genome-scale oscillations in DNA methylation during exit from pluripotency

genomics more details view paper
  • Downloaded 873 times
  • Download rankings, all-time:
    • Site-wide: 7,132 out of 52,985
    • In genomics: 1,145 out of 3,779
  • Year to date:
    • Site-wide: 23,913 out of 52,985
  • Since beginning of last month:
    • Site-wide: 30,637 out of 52,985

Joint genetic analysis using variant sets reveals polygenic gene-context interactions

genetics more details view paper
  • Downloaded 857 times
  • Download rankings, all-time:
    • Site-wide: 7,329 out of 52,985
    • In genetics: 582 out of 3,086
  • Year to date:
    • Site-wide: 45,361 out of 52,985
  • Since beginning of last month:
    • Site-wide: 42,703 out of 52,985

Population-scale proteome variation in human induced pluripotent stem cells

genomics more details view paper
  • Downloaded 849 times
  • Download rankings, all-time:
    • Site-wide: 7,427 out of 52,985
    • In genomics: 1,171 out of 3,779
  • Year to date:
    • Site-wide: 5,881 out of 52,985
  • Since beginning of last month:
    • Site-wide: 7,338 out of 52,985

Identifying extrinsic versus intrinsic drivers of variation in cell behaviour in human iPS cell lines from healthy donors

cell biology more details view paper
  • Downloaded 801 times
  • Download rankings, all-time:
    • Site-wide: 8,143 out of 52,985
    • In cell biology: 274 out of 2,499
  • Year to date:
    • Site-wide: 14,062 out of 52,985
  • Since beginning of last month:
    • Site-wide: 28,051 out of 52,985

Comparative architectures of direct and social genetic effects from the genome-wide association study of 170 phenotypes in laboratory mice

genetics more details view paper
  • Downloaded 782 times
  • Download rankings, all-time:
    • Site-wide: 8,443 out of 52,985
    • In genetics: 650 out of 3,086
  • Year to date:
    • Site-wide: 3,736 out of 52,985
  • Since beginning of last month:
    • Site-wide: 12,292 out of 52,985

Screening for genes that accelerate the epigenetic ageing clock in humans reveals a role for the H3K36 methyltransferase NSD1

genomics more details view paper
  • Downloaded 770 times
  • Download rankings, all-time:
    • Site-wide: 8,624 out of 52,985
    • In genomics: 1,314 out of 3,779
  • Year to date:
    • Site-wide: 1,066 out of 52,985
  • Since beginning of last month:
    • Site-wide: 2,799 out of 52,985

Genomic determinants of protein abundance variation in colorectal cancer cells

systems biology more details view paper
  • Downloaded 716 times
  • Download rankings, all-time:
    • Site-wide: 9,591 out of 52,985
    • In systems biology: 268 out of 1,547
  • Year to date:
    • Site-wide: 37,989 out of 52,985
  • Since beginning of last month:
    • Site-wide: 35,897 out of 52,985

Genomic Rearrangements Considered as Quantitative Traits

genetics more details view paper
  • Downloaded 667 times
  • Download rankings, all-time:
    • Site-wide: 10,575 out of 52,985
    • In genetics: 777 out of 3,086
  • Year to date:
    • Site-wide: 44,281 out of 52,985
  • Since beginning of last month:
    • Site-wide: 43,885 out of 52,985

Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage

genomics more details view paper
  • Downloaded 657 times
  • Download rankings, all-time:
    • Site-wide: 10,818 out of 52,985
    • In genomics: 1,544 out of 3,779
  • Year to date:
    • Site-wide: 47,015 out of 52,985
  • Since beginning of last month:
    • Site-wide: 46,502 out of 52,985

Tandem duplications lead to loss of fitness effects in CRISPR-Cas9 data

genomics more details view paper
  • Downloaded 605 times
  • Download rankings, all-time:
    • Site-wide: 12,074 out of 52,985
    • In genomics: 1,665 out of 3,779
  • Year to date:
    • Site-wide: 22,054 out of 52,985
  • Since beginning of last month:
    • Site-wide: 19,121 out of 52,985

Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference

bioinformatics more details view paper
  • Downloaded 603 times
  • Download rankings, all-time:
    • Site-wide: 12,139 out of 52,985
    • In bioinformatics: 2,007 out of 5,530
  • Year to date:
    • Site-wide: 1,628 out of 52,985
  • Since beginning of last month:
    • Site-wide: 1,545 out of 52,985

Integrative Genome-wide Analysis of the Determinants of RNA Splicing in Kidney Renal Clear Cell Carcinoma

cancer biology more details view paper
  • Downloaded 557 times
  • Download rankings, all-time:
    • Site-wide: 13,423 out of 52,985
    • In cancer biology: 379 out of 1,704
  • Year to date:
    • Site-wide: 49,087 out of 52,985
  • Since beginning of last month:
    • Site-wide: 48,860 out of 52,985

Multi-Tissue DNA Methylation Age Predictor In Mouse

genomics more details view paper
  • Downloaded 473 times
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    • Site-wide: 16,524 out of 52,985
    • In genomics: 2,041 out of 3,779
  • Year to date:
    • Site-wide: 47,652 out of 52,985
  • Since beginning of last month:
    • Site-wide: 37,676 out of 52,985

Interactions between genetic variation and cellular environment in skeletal muscle gene expression

genetics more details view paper
  • Downloaded 454 times
  • Download rankings, all-time:
    • Site-wide: 17,351 out of 52,985
    • In genetics: 1,213 out of 3,086
  • Year to date:
    • Site-wide: 46,415 out of 52,985
  • Since beginning of last month:
    • Site-wide: 48,046 out of 52,985

Multi-omics characterization of interaction-mediated control of human protein abundance levels

genomics more details view paper
  • Downloaded 308 times
  • Download rankings, all-time:
    • Site-wide: 25,664 out of 52,985
    • In genomics: 2,639 out of 3,779
  • Year to date:
    • Site-wide: 14,651 out of 52,985
  • Since beginning of last month:
    • Site-wide: 17,643 out of 52,985

In-depth genetic analysis of 6p21.3 reveals insights into associations between HLA types and complex traits and disease

genomics more details view paper
  • Downloaded 150 times
  • Download rankings, all-time:
    • Site-wide: 41,260 out of 52,985
    • In genomics: 3,378 out of 3,779
  • Year to date:
    • Site-wide: 14,187 out of 52,985
  • Since beginning of last month:
    • Site-wide: 25,578 out of 52,985

Using the past to estimate sensory uncertainty

neuroscience more details view paper
  • Downloaded 108 times
  • Download rankings, all-time:
    • Site-wide: 46,370 out of 52,985
    • In neuroscience: 8,108 out of 9,300
  • Year to date:
    • Site-wide: 20,592 out of 52,985
  • Since beginning of last month:
    • Site-wide: 32,463 out of 52,985

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