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Author: Nathan Springer

Rankings

  • All-time downloads: 25,173 (rank: 7,424 )
  • Categories:
    • bioinformatics: 511 (rank: 26,553 (tie) )
    • evolutionary biology: 2,848 (rank: 1,620 (tie) )
    • genetics: 1,339 (rank: 13,243 (tie) )
    • genomics: 10,898 (rank: 1,876 )
    • plant biology: 9,577 (rank: 76 )

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Preprints

Improved maize reference genome with single molecule technologies

genomics more details view paper
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    • Site-wide: 1,929
    • In genomics: 169
  • Year to date:
    • Site-wide: 82,661
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    • Site-wide: 80,539

The Genomic Ecosystem of Transposable Elements in Maize

evolutionary biology more details view paper
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    • Site-wide: 5,074
    • In evolutionary biology: 110
  • Year to date:
    • Site-wide: 8,312
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    • Site-wide: 18,945

Transposable elements contribute to dynamic genome content in maize

genomics more details view paper
  • Downloaded 1,887 times
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    • Site-wide: 9,285
    • In genomics: 961
  • Year to date:
    • Site-wide: 60,097
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Widespread natural variation of DNA methylation within angiosperms

plant biology more details view paper
  • Downloaded 1,754 times
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    • Site-wide: 10,355
    • In plant biology: 99
  • Year to date:
    • Site-wide: 90,260
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Genotype-by-Environment Interactions Affecting Heterosis in Maize

genetics more details view paper
  • Downloaded 847 times
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    • Site-wide: 30,099
    • In genetics: 1,403
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    • Site-wide: 120,576
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    • Site-wide: 111,691

UAV Based Imaging Platform for Monitoring Maize Growth Throughout Development

plant biology more details view paper
  • Downloaded 844 times
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    • Site-wide: 30,292
    • In plant biology: 533
  • Year to date:
    • Site-wide: 51,999
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    • Site-wide: 47,121

Classifying cold stress responses of inbred maize seedlings using RGB imaging

plant biology more details view paper
  • Downloaded 828 times
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    • Site-wide: 31,091
    • In plant biology: 554
  • Year to date:
    • Site-wide: 59,240
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    • Site-wide: 111,391

Optimization of multiplexed CRISPR/Cas9 system for highly efficient genome editing in Setaria viridis

plant biology more details view paper
  • Downloaded 816 times
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    • Site-wide: 31,700
    • In plant biology: 576
  • Year to date:
    • Site-wide: 23,850
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    • Site-wide: 18,434

Transposable elements contribute to activation of maize genes in response to abiotic stress

genomics more details view paper
  • Downloaded 815 times
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    • Site-wide: 31,776
    • In genomics: 2,790
  • Year to date:
    • Site-wide: 127,438
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    • Site-wide: 131,222

Cis-regulatory elements within TEs can influence expression of nearby maize genes

plant biology more details view paper
  • Downloaded 800 times
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    • Site-wide: 32,572
    • In plant biology: 598
  • Year to date:
    • Site-wide: 43,051
  • Since beginning of last month:
    • Site-wide: 42,641

Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes

genomics more details view paper
  • Downloaded 662 times
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    • Site-wide: 42,147
    • In genomics: 3,422
  • Year to date:
    • Site-wide: 59,617
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    • Site-wide: 48,440

Targeted epigenomic changes to the maize methylome resulting from tissue culture

plant biology more details view paper
  • Downloaded 641 times
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    • Site-wide: 43,972
    • In plant biology: 953
  • Year to date:
    • Site-wide: 133,101
  • Since beginning of last month:
    • Site-wide: 125,017

Highly Genotype- and Tissue-specific Single-Parent Expression Drives Dynamic Gene Expression Complementation in Maize Hybrids

genomics more details view paper
  • Downloaded 578 times
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    • Site-wide: 50,011
    • In genomics: 3,867
  • Year to date:
    • Site-wide: 77,399
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    • Site-wide: 67,470

Utilizing top-down hyperspectral imaging for monitoring genotype and growth conditions in maize

plant biology more details view paper
  • Downloaded 561 times
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    • Site-wide: 51,912
    • In plant biology: 1,221
  • Year to date:
    • Site-wide: 42,618
  • Since beginning of last month:
    • Site-wide: 37,530

Subtle perturbations of the maize methylome reveal genes and transposons silenced by DNA methylation

plant biology more details view paper
  • Downloaded 548 times
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    • Site-wide: 53,422
    • In plant biology: 1,266
  • Year to date:
    • Site-wide: 137,542
  • Since beginning of last month:
    • Site-wide: 137,563

Using multiple reference genomes to identify and resolve annotation inconsistencies

bioinformatics more details view paper
  • Downloaded 511 times
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    • Site-wide: 58,011
    • In bioinformatics: 5,778
  • Year to date:
    • Site-wide: 92,040
  • Since beginning of last month:
    • Site-wide: 116,715

Hybrid decay: a transgenerational epigenetic decline in vigor and viability triggered in backcross populations of teosinte with maize

genetics more details view paper
  • Downloaded 492 times
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    • Site-wide: 60,557
    • In genetics: 2,706
  • Year to date:
    • Site-wide: 109,545
  • Since beginning of last month:
    • Site-wide: 112,527

Chromosome-level Genome Assembly of a Regenerable Maize Inbred Line A188

genomics more details view paper
  • Downloaded 488 times
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    • Site-wide: 61,092
    • In genomics: 4,439
  • Year to date:
    • Site-wide: 33,281
  • Since beginning of last month:
    • Site-wide: 27,007

Applying cis-regulatory codes to predict conserved and variable heat and cold stress response in maize

plant biology more details view paper
  • Downloaded 485 times
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    • Site-wide: 61,447
    • In plant biology: 1,514
  • Year to date:
    • Site-wide: 7,816
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    • Site-wide: 17,013

Widespread imprinting of transposable elements and young genes in the maize endosperm

plant biology more details view paper
  • Downloaded 483 times
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    • Site-wide: 61,686
    • In plant biology: 1,524
  • Year to date:
    • Site-wide: 77,640
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    • Site-wide: 104,655

Dynamic patterns of transcript abundance of transposable element families in maize

genomics more details view paper
  • Downloaded 472 times
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    • Site-wide: 63,288
    • In genomics: 4,537
  • Year to date:
    • Site-wide: 141,824
  • Since beginning of last month:
    • Site-wide: 115,771

Limited role of differential fractionation in genome content variation and function in maize (Zea mays L.) inbred lines

plant biology more details view paper
  • Downloaded 465 times
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    • Site-wide: 64,357
    • In plant biology: 1,618
  • Year to date:
    • Site-wide: 139,947
  • Since beginning of last month:
    • Site-wide: 124,917

Genetic and epigenetic contributions to variation in transposable element expression responses to abiotic stress in maize

plant biology more details view paper
  • Downloaded 428 times
  • Download rankings, all-time:
    • Site-wide: 70,145
    • In plant biology: 1,795
  • Year to date:
    • Site-wide: 72,872
  • Since beginning of last month:
    • Site-wide: 54,080

Stability of DNA methylation and chromatin accessibility in structurally diverse maize genomes

plant biology more details view paper
  • Downloaded 363 times
  • Download rankings, all-time:
    • Site-wide: 81,866
    • In plant biology: 2,141
  • Year to date:
    • Site-wide: 11,852
  • Since beginning of last month:
    • Site-wide: 26,633

Characterizing allele-by-environment interactions using maize introgression lines

plant biology more details view paper
  • Downloaded 343 times
  • Download rankings, all-time:
    • Site-wide: 85,710
    • In plant biology: 2,256
  • Year to date:
    • Site-wide: 116,895
  • Since beginning of last month:
    • Site-wide: 121,916

Variation and inheritance of small RNAs in maize inbreds and F1 hybrids

genomics more details view paper
  • Downloaded 342 times
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    • Site-wide: 86,067
    • In genomics: 5,532
  • Year to date:
    • Site-wide: 137,734
  • Since beginning of last month:
    • Site-wide: 102,998

Utilizing Temporal Measurements from UAVs to Assess Root Lodging in Maize and its Impact on Productivity

plant biology more details view paper
  • Downloaded 218 times
  • Download rankings, all-time:
    • Site-wide: 114,674
    • In plant biology: 3,147
  • Year to date:
    • Site-wide: 90,975
  • Since beginning of last month:
    • Site-wide: 104,759

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