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Author: Nathan Springer

Rankings

  • All-time downloads: 24,374 (rank: 7,035 )
  • Categories:
    • bioinformatics: 500 (rank: 25,447 (tie) )
    • evolutionary biology: 2,749 (rank: 1,585 (tie) )
    • genetics: 1,317 (rank: 12,991 (tie) )
    • genomics: 10,725 (rank: 1,729 )
    • plant biology: 9,083 (rank: 80 )

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Preprints

Improved maize reference genome with single molecule technologies

genomics more details view paper
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    • Site-wide: 1,768
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The Genomic Ecosystem of Transposable Elements in Maize

evolutionary biology more details view paper
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    • In evolutionary biology: 107
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    • Site-wide: 6,486
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Transposable elements contribute to dynamic genome content in maize

genomics more details view paper
  • Downloaded 1,862 times
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    • Site-wide: 8,619
    • In genomics: 931
  • Year to date:
    • Site-wide: 49,408
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Widespread natural variation of DNA methylation within angiosperms

plant biology more details view paper
  • Downloaded 1,744 times
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    • Site-wide: 9,534
    • In plant biology: 89
  • Year to date:
    • Site-wide: 70,009
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Genotype-by-Environment Interactions Affecting Heterosis in Maize

genetics more details view paper
  • Downloaded 837 times
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    • Site-wide: 28,001
    • In genetics: 1,344
  • Year to date:
    • Site-wide: 107,103
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Classifying cold stress responses of inbred maize seedlings using RGB imaging

plant biology more details view paper
  • Downloaded 817 times
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    • Site-wide: 28,978
    • In plant biology: 520
  • Year to date:
    • Site-wide: 41,030
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    • Site-wide: 57,140

Transposable elements contribute to activation of maize genes in response to abiotic stress

genomics more details view paper
  • Downloaded 807 times
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    • Site-wide: 29,472
    • In genomics: 2,684
  • Year to date:
    • Site-wide: 114,882
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    • Site-wide: 123,306

UAV Based Imaging Platform for Monitoring Maize Growth Throughout Development

plant biology more details view paper
  • Downloaded 803 times
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    • Site-wide: 29,674
    • In plant biology: 543
  • Year to date:
    • Site-wide: 49,616
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Cis-regulatory elements within TEs can influence expression of nearby maize genes

plant biology more details view paper
  • Downloaded 763 times
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    • Site-wide: 31,918
    • In plant biology: 603
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    • Site-wide: 36,640
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Optimization of multiplexed CRISPR/Cas9 system for highly efficient genome editing in Setaria viridis

plant biology more details view paper
  • Downloaded 740 times
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    • Site-wide: 33,217
    • In plant biology: 645
  • Year to date:
    • Site-wide: 23,267
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    • Site-wide: 14,304

Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes

genomics more details view paper
  • Downloaded 638 times
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    • Site-wide: 40,563
    • In genomics: 3,360
  • Year to date:
    • Site-wide: 48,454
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    • Site-wide: 83,589

Targeted epigenomic changes to the maize methylome resulting from tissue culture

plant biology more details view paper
  • Downloaded 634 times
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    • Site-wide: 40,859
    • In plant biology: 876
  • Year to date:
    • Site-wide: 119,712
  • Since beginning of last month:
    • Site-wide: 90,076

Highly Genotype- and Tissue-specific Single-Parent Expression Drives Dynamic Gene Expression Complementation in Maize Hybrids

genomics more details view paper
  • Downloaded 556 times
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    • Site-wide: 48,103
    • In genomics: 3,799
  • Year to date:
    • Site-wide: 68,612
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    • Site-wide: 70,102

Subtle perturbations of the maize methylome reveal genes and transposons silenced by DNA methylation

plant biology more details view paper
  • Downloaded 542 times
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    • Site-wide: 49,598
    • In plant biology: 1,177
  • Year to date:
    • Site-wide: 124,735
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    • Site-wide: 106,668

Utilizing top-down hyperspectral imaging for monitoring genotype and growth conditions in maize

plant biology more details view paper
  • Downloaded 505 times
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    • Site-wide: 54,038
    • In plant biology: 1,307
  • Year to date:
    • Site-wide: 45,015
  • Since beginning of last month:
    • Site-wide: 46,715

Using multiple reference genomes to identify and resolve annotation inconsistencies

bioinformatics more details view paper
  • Downloaded 500 times
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    • Site-wide: 54,592
    • In bioinformatics: 5,528
  • Year to date:
    • Site-wide: 72,033
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    • Site-wide: 68,867

Hybrid decay: a transgenerational epigenetic decline in vigor and viability triggered in backcross populations of teosinte with maize

genetics more details view paper
  • Downloaded 480 times
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    • Site-wide: 57,233
    • In genetics: 2,637
  • Year to date:
    • Site-wide: 96,456
  • Since beginning of last month:
    • Site-wide: 86,905

Dynamic patterns of transcript abundance of transposable element families in maize

genomics more details view paper
  • Downloaded 466 times
  • Download rankings, all-time:
    • Site-wide: 58,945
    • In genomics: 4,363
  • Year to date:
    • Site-wide: 130,510
  • Since beginning of last month:
    • Site-wide: 112,293

Widespread imprinting of transposable elements and young genes in the maize endosperm

plant biology more details view paper
  • Downloaded 465 times
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    • Site-wide: 59,077
    • In plant biology: 1,472
  • Year to date:
    • Site-wide: 64,321
  • Since beginning of last month:
    • Site-wide: 92,299

Limited role of differential fractionation in genome content variation and function in maize (Zea mays L.) inbred lines

plant biology more details view paper
  • Downloaded 459 times
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    • Site-wide: 59,966
    • In plant biology: 1,503
  • Year to date:
    • Site-wide: 127,010
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    • Site-wide: 106,682

Chromosome-level Genome Assembly of a Regenerable Maize Inbred Line A188

genomics more details view paper
  • Downloaded 432 times
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    • Site-wide: 63,754
    • In genomics: 4,591
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    • Site-wide: 30,957
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Genetic and epigenetic contributions to variation in transposable element expression responses to abiotic stress in maize

plant biology more details view paper
  • Downloaded 401 times
  • Download rankings, all-time:
    • Site-wide: 68,761
    • In plant biology: 1,780
  • Year to date:
    • Site-wide: 67,494
  • Since beginning of last month:
    • Site-wide: 126,400

Applying cis-regulatory codes to predict conserved and variable heat and cold stress response in maize

plant biology more details view paper
  • Downloaded 389 times
  • Download rankings, all-time:
    • Site-wide: 70,882
    • In plant biology: 1,839
  • Year to date:
    • Site-wide: 5,944
  • Since beginning of last month:
    • Site-wide: 20,534

Characterizing allele-by-environment interactions using maize introgression lines

plant biology more details view paper
  • Downloaded 335 times
  • Download rankings, all-time:
    • Site-wide: 80,701
    • In plant biology: 2,137
  • Year to date:
    • Site-wide: 100,092
  • Since beginning of last month:
    • Site-wide: 96,705

Variation and inheritance of small RNAs in maize inbreds and F1 hybrids

genomics more details view paper
  • Downloaded 331 times
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    • Site-wide: 81,508
    • In genomics: 5,331
  • Year to date:
    • Site-wide: 133,965
  • Since beginning of last month:
    • Site-wide: 111,209

Stability of DNA methylation and chromatin accessibility in structurally diverse maize genomes

plant biology more details view paper
  • Downloaded 279 times
  • Download rankings, all-time:
    • Site-wide: 92,455
    • In plant biology: 2,467
  • Year to date:
    • Site-wide: 9,580
  • Since beginning of last month:
    • Site-wide: 15,615

Utilizing Temporal Measurements from UAVs to Assess Root Lodging in Maize and its Impact on Productivity

plant biology more details view paper
  • Downloaded 207 times
  • Download rankings, all-time:
    • Site-wide: 108,639
    • In plant biology: 2,986
  • Year to date:
    • Site-wide: 71,102
  • Since beginning of last month:
    • Site-wide: 53,656

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