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Author: Nathan M. Springer

Rankings

  • All-time downloads: 26,322 (rank: 7,983 )
  • Categories:
    • bioinformatics: 528 (rank: 28,016 (tie) )
    • evolutionary biology: 3,058 (rank: 1,571 (tie) )
    • genetics: 1,540 (rank: 12,493 (tie) )
    • genomics: 11,085 (rank: 1,923 )
    • plant biology: 10,111 (rank: 78 )

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Preprints

Improved maize reference genome with single molecule technologies

genomics more details view paper
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    • Site-wide: 2,154
    • In genomics: 184
  • Year to date:
    • Site-wide: 89,887
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    • Site-wide: 83,387

The Genomic Ecosystem of Transposable Elements in Maize

evolutionary biology more details view paper
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    • Site-wide: 5,081
    • In evolutionary biology: 98
  • Year to date:
    • Site-wide: 7,819
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    • Site-wide: 11,775

Transposable elements contribute to dynamic genome content in maize

genomics more details view paper
  • Downloaded 1,917 times
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    • Site-wide: 10,021
    • In genomics: 1,004
  • Year to date:
    • Site-wide: 72,388
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    • Site-wide: 112,268

Widespread natural variation of DNA methylation within angiosperms

plant biology more details view paper
  • Downloaded 1,771 times
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    • Site-wide: 11,277
    • In plant biology: 110
  • Year to date:
    • Site-wide: 110,847
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Optimization of multiplexed CRISPR/Cas9 system for highly efficient genome editing in Setaria viridis

plant biology more details view paper
  • Downloaded 879 times
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    • Site-wide: 31,909
    • In plant biology: 554
  • Year to date:
    • Site-wide: 28,397
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    • Site-wide: 41,737

UAV Based Imaging Platform for Monitoring Maize Growth Throughout Development

plant biology more details view paper
  • Downloaded 872 times
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    • Site-wide: 32,220
    • In plant biology: 569
  • Year to date:
    • Site-wide: 65,835
  • Since beginning of last month:
    • Site-wide: 139,017

Cis-regulatory elements within TEs can influence expression of nearby maize genes

plant biology more details view paper
  • Downloaded 869 times
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    • Site-wide: 32,392
    • In plant biology: 574
  • Year to date:
    • Site-wide: 43,547
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    • Site-wide: 44,490

Genotype-by-Environment Interactions Affecting Heterosis in Maize

genetics more details view paper
  • Downloaded 861 times
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    • Site-wide: 32,828
    • In genetics: 1,467
  • Year to date:
    • Site-wide: 137,780
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    • Site-wide: 134,354

Classifying cold stress responses of inbred maize seedlings using RGB imaging

plant biology more details view paper
  • Downloaded 846 times
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    • Site-wide: 33,630
    • In plant biology: 609
  • Year to date:
    • Site-wide: 79,218
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    • Site-wide: 117,828

Transposable elements contribute to activation of maize genes in response to abiotic stress

genomics more details view paper
  • Downloaded 824 times
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    • Site-wide: 34,898
    • In genomics: 2,934
  • Year to date:
    • Site-wide: 149,584
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    • Site-wide: 156,628

Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes

genomics more details view paper
  • Downloaded 679 times
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    • Site-wide: 45,655
    • In genomics: 3,583
  • Year to date:
    • Site-wide: 79,785
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    • Site-wide: 120,286

Targeted epigenomic changes to the maize methylome resulting from tissue culture

plant biology more details view paper
  • Downloaded 651 times
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    • Site-wide: 48,216
    • In plant biology: 1,060
  • Year to date:
    • Site-wide: 150,643
  • Since beginning of last month:
    • Site-wide: 151,107

Highly Genotype- and Tissue-specific Single-Parent Expression Drives Dynamic Gene Expression Complementation in Maize Hybrids

genomics more details view paper
  • Downloaded 614 times
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    • Site-wide: 52,067
    • In genomics: 3,945
  • Year to date:
    • Site-wide: 84,161
  • Since beginning of last month:
    • Site-wide: 93,948

Utilizing top-down hyperspectral imaging for monitoring genotype and growth conditions in maize

plant biology more details view paper
  • Downloaded 607 times
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    • Site-wide: 52,811
    • In plant biology: 1,208
  • Year to date:
    • Site-wide: 49,703
  • Since beginning of last month:
    • Site-wide: 47,627

Subtle perturbations of the maize methylome reveal genes and transposons silenced by DNA methylation

plant biology more details view paper
  • Downloaded 571 times
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    • Site-wide: 57,108
    • In plant biology: 1,340
  • Year to date:
    • Site-wide: 140,116
  • Since beginning of last month:
    • Site-wide: 100,267

Applying cis-regulatory codes to predict conserved and variable heat and cold stress response in maize

plant biology more details view paper
  • Downloaded 564 times
  • Download rankings, all-time:
    • Site-wide: 57,902
    • In plant biology: 1,374
  • Year to date:
    • Site-wide: 10,273
  • Since beginning of last month:
    • Site-wide: 28,718

Using multiple reference genomes to identify and resolve annotation inconsistencies

bioinformatics more details view paper
  • Downloaded 528 times
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    • Site-wide: 62,613
    • In bioinformatics: 6,098
  • Year to date:
    • Site-wide: 111,646
  • Since beginning of last month:
    • Site-wide: 152,065

Chromosome-level Genome Assembly of a Regenerable Maize Inbred Line A188

genomics more details view paper
  • Downloaded 528 times
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    • Site-wide: 62,703
    • In genomics: 4,498
  • Year to date:
    • Site-wide: 42,058
  • Since beginning of last month:
    • Site-wide: 86,413

Widespread imprinting of transposable elements and young genes in the maize endosperm

plant biology more details view paper
  • Downloaded 509 times
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    • Site-wide: 65,267
    • In plant biology: 1,601
  • Year to date:
    • Site-wide: 91,218
  • Since beginning of last month:
    • Site-wide: 122,243

Hybrid decay: a transgenerational epigenetic decline in vigor and viability triggered in backcross populations of teosinte with maize

genetics more details view paper
  • Downloaded 507 times
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    • Site-wide: 65,542
    • In genetics: 2,843
  • Year to date:
    • Site-wide: 129,014
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    • Site-wide: 124,246

Dynamic patterns of transcript abundance of transposable element families in maize

genomics more details view paper
  • Downloaded 483 times
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    • Site-wide: 69,209
    • In genomics: 4,821
  • Year to date:
    • Site-wide: 155,113
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    • Site-wide: 146,676

Limited role of differential fractionation in genome content variation and function in maize (Zea mays L.) inbred lines

plant biology more details view paper
  • Downloaded 475 times
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    • Site-wide: 70,602
    • In plant biology: 1,772
  • Year to date:
    • Site-wide: 154,370
  • Since beginning of last month:
    • Site-wide: 157,061

Genetic and epigenetic contributions to variation in transposable element expression responses to abiotic stress in maize

plant biology more details view paper
  • Downloaded 474 times
  • Download rankings, all-time:
    • Site-wide: 70,781
    • In plant biology: 1,781
  • Year to date:
    • Site-wide: 74,266
  • Since beginning of last month:
    • Site-wide: 42,681

Stability of DNA methylation and chromatin accessibility in structurally diverse maize genomes

plant biology more details view paper
  • Downloaded 405 times
  • Download rankings, all-time:
    • Site-wide: 83,096
    • In plant biology: 2,159
  • Year to date:
    • Site-wide: 16,844
  • Since beginning of last month:
    • Site-wide: 70,160

Characterizing allele-by-environment interactions using maize introgression lines

plant biology more details view paper
  • Downloaded 373 times
  • Download rankings, all-time:
    • Site-wide: 89,611
    • In plant biology: 2,359
  • Year to date:
    • Site-wide: 117,836
  • Since beginning of last month:
    • Site-wide: 125,270

Variation and inheritance of small RNAs in maize inbreds and F1 hybrids

genomics more details view paper
  • Downloaded 352 times
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    • Site-wide: 94,311
    • In genomics: 5,861
  • Year to date:
    • Site-wide: 153,238
  • Since beginning of last month:
    • Site-wide: 154,067

Utilizing Temporal Measurements from UAVs to Assess Root Lodging in Maize and its Impact on Productivity

plant biology more details view paper
  • Downloaded 245 times
  • Download rankings, all-time:
    • Site-wide: 120,625
    • In plant biology: 3,316
  • Year to date:
    • Site-wide: 101,287
  • Since beginning of last month:
    • Site-wide: 94,669

The maize gene maternal depression of r1 (mdr1) encodes a DNA glycosylase with maternal and paternal fertility functions

genetics more details view paper
  • Downloaded 172 times
  • Download rankings, all-time:
    • Site-wide: 139,147
    • In genetics: 5,546
  • Year to date:
    • Site-wide: 51,870
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    • Site-wide: 4,083

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